Strain Fitness in Pseudomonas simiae WCS417 around PS417_06280

Experiment: Chloramphenicol 0.0075 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06275 and PS417_06280 overlap by 4 nucleotidesPS417_06280 and PS417_06285 are separated by 73 nucleotides PS417_06275: PS417_06275 - lipid-A-disaccharide synthase, at 1,391,651 to 1,392,790 _06275 PS417_06280: PS417_06280 - ribonuclease HII, at 1,392,787 to 1,393,419 _06280 PS417_06285: PS417_06285 - DNA polymerase III subunit alpha, at 1,393,493 to 1,397,014 _06285 Position (kb) 1392 1393 1394Strain fitness (log2 ratio) -1 0 1 2at 1392.979 kb on + strandat 1393.268 kb on - strand, within PS417_06280at 1393.268 kb on - strand, within PS417_06280at 1393.418 kb on - strandat 1393.418 kb on - strandat 1393.479 kb on + strandat 1393.479 kb on + strandat 1393.479 kb on + strandat 1393.479 kb on + strandat 1393.479 kb on + strandat 1393.481 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0075 mg/ml
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1,392,979 + +2.1
1,393,268 - PS417_06280 0.76 +1.3
1,393,268 - PS417_06280 0.76 +0.0
1,393,418 - -0.1
1,393,418 - +0.6
1,393,479 + -0.9
1,393,479 + -0.4
1,393,479 + +0.1
1,393,479 + -0.2
1,393,479 + -1.0
1,393,481 + +0.1

Or see this region's nucleotide sequence