Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06025 and PS417_06030 overlap by 4 nucleotides PS417_06030 and PS417_06035 are separated by 168 nucleotides PS417_06035 and PS417_06040 are separated by 186 nucleotides PS417_06040 and PS417_06045 are separated by 29 nucleotides
PS417_06025: PS417_06025 - alpha/beta hydrolase, at 1,339,405 to 1,340,310
_06025
PS417_06030: PS417_06030 - hypothetical protein, at 1,340,307 to 1,340,633
_06030
PS417_06035: PS417_06035 - hypothetical protein, at 1,340,802 to 1,341,146
_06035
PS417_06040: PS417_06040 - hypothetical protein, at 1,341,333 to 1,341,527
_06040
PS417_06045: PS417_06045 - membrane protein, at 1,341,557 to 1,342,342
_06045
Position (kb)
1340
1341 Strain fitness (log2 ratio)
-2
-1
0
1 at 1339.309 kb on + strand at 1339.309 kb on + strand at 1339.309 kb on + strand at 1339.309 kb on + strand at 1339.309 kb on + strand at 1339.309 kb on + strand at 1339.309 kb on + strand at 1339.310 kb on - strand at 1339.310 kb on - strand at 1339.310 kb on - strand at 1339.310 kb on - strand at 1339.310 kb on - strand at 1339.310 kb on - strand at 1339.310 kb on - strand at 1339.310 kb on - strand at 1339.310 kb on - strand at 1339.385 kb on + strand at 1339.386 kb on - strand at 1339.389 kb on - strand at 1339.433 kb on + strand at 1339.516 kb on + strand, within PS417_06025 at 1339.711 kb on + strand, within PS417_06025 at 1339.751 kb on - strand, within PS417_06025 at 1339.859 kb on - strand, within PS417_06025 at 1339.859 kb on - strand, within PS417_06025 at 1339.938 kb on - strand, within PS417_06025 at 1339.938 kb on - strand, within PS417_06025 at 1340.269 kb on + strand at 1340.270 kb on - strand at 1340.280 kb on + strand at 1340.389 kb on - strand, within PS417_06030 at 1340.389 kb on - strand, within PS417_06030 at 1340.394 kb on + strand, within PS417_06030 at 1340.473 kb on - strand, within PS417_06030 at 1340.473 kb on - strand, within PS417_06030 at 1340.687 kb on + strand at 1340.800 kb on - strand at 1340.800 kb on - strand at 1340.800 kb on - strand at 1340.800 kb on - strand at 1340.800 kb on - strand at 1340.802 kb on - strand at 1340.810 kb on + strand at 1340.915 kb on + strand, within PS417_06035 at 1340.927 kb on + strand, within PS417_06035 at 1341.201 kb on - strand at 1341.201 kb on - strand at 1341.288 kb on + strand at 1341.289 kb on - strand at 1341.289 kb on - strand at 1341.300 kb on - strand at 1341.314 kb on + strand at 1341.314 kb on + strand at 1341.318 kb on + strand at 1341.318 kb on + strand at 1341.319 kb on - strand at 1341.340 kb on + strand at 1341.388 kb on + strand, within PS417_06040 at 1341.388 kb on + strand, within PS417_06040 at 1341.389 kb on - strand, within PS417_06040 at 1341.417 kb on + strand, within PS417_06040 at 1341.526 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0075 mg/ml remove 1,339,309 + +0.3 1,339,309 + +1.2 1,339,309 + -0.2 1,339,309 + +0.5 1,339,309 + +1.2 1,339,309 + +0.1 1,339,309 + +0.6 1,339,310 - -0.8 1,339,310 - +0.2 1,339,310 - +0.6 1,339,310 - +0.1 1,339,310 - -0.4 1,339,310 - +0.2 1,339,310 - +0.9 1,339,310 - -0.7 1,339,310 - -0.3 1,339,385 + +1.2 1,339,386 - -1.2 1,339,389 - +1.4 1,339,433 + -1.4 1,339,516 + PS417_06025 0.12 -1.4 1,339,711 + PS417_06025 0.34 -0.6 1,339,751 - PS417_06025 0.38 +0.2 1,339,859 - PS417_06025 0.50 +0.5 1,339,859 - PS417_06025 0.50 +0.8 1,339,938 - PS417_06025 0.59 +0.2 1,339,938 - PS417_06025 0.59 +0.4 1,340,269 + -0.4 1,340,270 - -0.2 1,340,280 + +0.2 1,340,389 - PS417_06030 0.25 -1.4 1,340,389 - PS417_06030 0.25 -1.4 1,340,394 + PS417_06030 0.27 -0.5 1,340,473 - PS417_06030 0.51 -0.4 1,340,473 - PS417_06030 0.51 -1.9 1,340,687 + -0.3 1,340,800 - -0.3 1,340,800 - -1.0 1,340,800 - -0.4 1,340,800 - +0.3 1,340,800 - -0.2 1,340,802 - +1.4 1,340,810 + -0.1 1,340,915 + PS417_06035 0.33 +1.2 1,340,927 + PS417_06035 0.36 +0.2 1,341,201 - -0.1 1,341,201 - +0.4 1,341,288 + +1.2 1,341,289 - +0.4 1,341,289 - +1.2 1,341,300 - -0.1 1,341,314 + -1.2 1,341,314 + -0.3 1,341,318 + -0.2 1,341,318 + -0.4 1,341,319 - -0.2 1,341,340 + +0.6 1,341,388 + PS417_06040 0.28 +0.1 1,341,388 + PS417_06040 0.28 -0.1 1,341,389 - PS417_06040 0.29 +0.7 1,341,417 + PS417_06040 0.43 +0.2 1,341,526 - +0.4
Or see this region's nucleotide sequence