Strain Fitness in Pseudomonas simiae WCS417 around PS417_05785
Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.0075 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,290,844 | + | PS417_05775 | 0.68 | +0.3 | |
1,290,845 | - | PS417_05775 | 0.68 | -0.2 | |
1,291,186 | + | -0.8 | |||
1,291,334 | + | -0.0 | |||
1,291,334 | + | +0.4 | |||
1,291,363 | - | PS417_05780 | 0.15 | +0.4 | |
1,291,564 | + | PS417_05780 | 0.67 | +0.3 | |
1,291,687 | - | +0.9 | |||
1,291,687 | - | -1.0 | |||
1,291,698 | + | -0.8 | |||
1,291,698 | + | -0.3 | |||
1,291,698 | + | -0.1 | |||
1,291,739 | + | PS417_05785 | 0.27 | -0.7 | |
1,291,739 | + | PS417_05785 | 0.27 | -0.4 | |
1,291,891 | + | -0.9 | |||
1,291,918 | - | -3.1 | |||
1,291,937 | - | -0.5 | |||
1,292,115 | + | PS417_05790 | 0.21 | +0.4 | |
1,292,422 | + | PS417_05790 | 0.51 | +0.7 | |
1,292,422 | + | PS417_05790 | 0.51 | -0.0 | |
1,292,422 | + | PS417_05790 | 0.51 | +0.0 | |
1,292,563 | + | PS417_05790 | 0.65 | +0.9 | |
1,292,867 | - | +0.6 |
Or see this region's nucleotide sequence