Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4647 and Echvi_4648 are separated by 459 nucleotides Echvi_4648 and Echvi_4649 are separated by 21 nucleotides
Echvi_4647: Echvi_4647 - Outer membrane receptor proteins, mostly Fe transport, at 5,561,618 to 5,564,674
_4647
Echvi_4648: Echvi_4648 - hypothetical protein, at 5,565,134 to 5,565,676
_4648
Echvi_4649: Echvi_4649 - Type III restriction enzyme, res subunit., at 5,565,698 to 5,567,629
_4649
Position (kb) 5565
5566 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5564.189 kb on - strand, within Echvi_4647 at 5564.189 kb on - strand, within Echvi_4647 at 5564.301 kb on + strand, within Echvi_4647 at 5564.356 kb on + strand, within Echvi_4647 at 5564.356 kb on + strand, within Echvi_4647 at 5564.356 kb on + strand, within Echvi_4647 at 5564.356 kb on + strand, within Echvi_4647 at 5564.357 kb on - strand, within Echvi_4647 at 5564.375 kb on + strand at 5564.375 kb on + strand at 5564.375 kb on + strand at 5564.376 kb on - strand at 5564.392 kb on + strand at 5564.446 kb on + strand at 5564.450 kb on - strand at 5564.450 kb on - strand at 5564.489 kb on - strand at 5564.496 kb on - strand at 5564.606 kb on + strand at 5564.607 kb on - strand at 5564.607 kb on - strand at 5564.662 kb on + strand at 5564.662 kb on + strand at 5564.663 kb on - strand at 5564.663 kb on - strand at 5564.663 kb on - strand at 5564.730 kb on + strand at 5564.731 kb on - strand at 5564.733 kb on + strand at 5564.837 kb on + strand at 5564.838 kb on - strand at 5564.877 kb on + strand at 5564.877 kb on + strand at 5564.878 kb on - strand at 5564.887 kb on - strand at 5564.942 kb on + strand at 5564.973 kb on - strand at 5564.976 kb on + strand at 5564.976 kb on + strand at 5564.977 kb on - strand at 5565.001 kb on + strand at 5565.002 kb on - strand at 5565.179 kb on + strand at 5565.180 kb on - strand at 5565.180 kb on - strand at 5565.180 kb on - strand at 5565.180 kb on - strand at 5565.188 kb on + strand at 5565.188 kb on + strand at 5565.188 kb on + strand at 5565.188 kb on + strand at 5565.188 kb on + strand at 5565.188 kb on + strand at 5565.188 kb on + strand at 5565.189 kb on - strand, within Echvi_4648 at 5565.189 kb on - strand, within Echvi_4648 at 5565.189 kb on - strand, within Echvi_4648 at 5565.194 kb on + strand, within Echvi_4648 at 5565.195 kb on - strand, within Echvi_4648 at 5565.195 kb on - strand, within Echvi_4648 at 5565.221 kb on + strand, within Echvi_4648 at 5565.251 kb on + strand, within Echvi_4648 at 5565.252 kb on - strand, within Echvi_4648 at 5565.435 kb on - strand, within Echvi_4648 at 5565.435 kb on - strand, within Echvi_4648 at 5565.446 kb on + strand, within Echvi_4648 at 5565.446 kb on + strand, within Echvi_4648 at 5565.447 kb on - strand, within Echvi_4648 at 5565.468 kb on + strand, within Echvi_4648 at 5565.537 kb on + strand, within Echvi_4648 at 5565.538 kb on - strand, within Echvi_4648 at 5565.538 kb on - strand, within Echvi_4648 at 5565.539 kb on + strand, within Echvi_4648 at 5565.540 kb on - strand, within Echvi_4648 at 5565.549 kb on + strand, within Echvi_4648 at 5565.549 kb on + strand, within Echvi_4648 at 5565.549 kb on + strand, within Echvi_4648 at 5565.550 kb on - strand, within Echvi_4648 at 5565.550 kb on - strand, within Echvi_4648 at 5565.618 kb on + strand, within Echvi_4648 at 5565.618 kb on + strand, within Echvi_4648 at 5565.619 kb on - strand, within Echvi_4648 at 5565.619 kb on - strand, within Echvi_4648 at 5565.619 kb on - strand, within Echvi_4648 at 5565.641 kb on + strand at 5565.641 kb on + strand at 5565.641 kb on + strand at 5565.642 kb on - strand at 5565.652 kb on + strand at 5565.653 kb on - strand at 5565.653 kb on - strand at 5565.675 kb on - strand at 5565.680 kb on + strand at 5565.699 kb on + strand at 5565.710 kb on - strand at 5565.710 kb on - strand at 5565.710 kb on - strand at 5565.711 kb on + strand at 5565.711 kb on + strand at 5565.711 kb on + strand at 5565.712 kb on - strand at 5565.717 kb on + strand at 5565.718 kb on - strand at 5565.721 kb on + strand at 5565.730 kb on - strand at 5565.730 kb on - strand at 5565.768 kb on + strand at 5565.813 kb on - strand at 5566.039 kb on + strand, within Echvi_4649 at 5566.063 kb on + strand, within Echvi_4649 at 5566.212 kb on + strand, within Echvi_4649 at 5566.213 kb on - strand, within Echvi_4649 at 5566.213 kb on - strand, within Echvi_4649 at 5566.285 kb on - strand, within Echvi_4649 at 5566.291 kb on - strand, within Echvi_4649 at 5566.312 kb on + strand, within Echvi_4649 at 5566.312 kb on + strand, within Echvi_4649 at 5566.312 kb on + strand, within Echvi_4649 at 5566.312 kb on + strand, within Echvi_4649 at 5566.312 kb on + strand, within Echvi_4649 at 5566.313 kb on - strand, within Echvi_4649 at 5566.313 kb on - strand, within Echvi_4649 at 5566.419 kb on + strand, within Echvi_4649 at 5566.481 kb on + strand, within Echvi_4649 at 5566.481 kb on + strand, within Echvi_4649 at 5566.484 kb on + strand, within Echvi_4649 at 5566.531 kb on + strand, within Echvi_4649 at 5566.535 kb on + strand, within Echvi_4649 at 5566.616 kb on + strand, within Echvi_4649 at 5566.617 kb on - strand, within Echvi_4649 at 5566.630 kb on + strand, within Echvi_4649 at 5566.630 kb on + strand, within Echvi_4649 at 5566.631 kb on - strand, within Echvi_4649 at 5566.631 kb on - strand, within Echvi_4649 at 5566.632 kb on + strand, within Echvi_4649 at 5566.632 kb on + strand, within Echvi_4649
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 5,564,189 - Echvi_4647 0.84 -1.9 5,564,189 - Echvi_4647 0.84 -1.0 5,564,301 + Echvi_4647 0.88 +0.8 5,564,356 + Echvi_4647 0.90 +1.7 5,564,356 + Echvi_4647 0.90 -0.6 5,564,356 + Echvi_4647 0.90 -0.2 5,564,356 + Echvi_4647 0.90 +0.0 5,564,357 - Echvi_4647 0.90 -0.2 5,564,375 + -2.1 5,564,375 + +0.1 5,564,375 + -0.3 5,564,376 - -1.1 5,564,392 + +0.5 5,564,446 + -0.0 5,564,450 - +1.0 5,564,450 - -1.1 5,564,489 - -0.1 5,564,496 - +2.1 5,564,606 + +0.4 5,564,607 - +1.1 5,564,607 - -1.1 5,564,662 + -1.0 5,564,662 + -1.0 5,564,663 - +0.5 5,564,663 - +1.3 5,564,663 - -1.6 5,564,730 + -0.9 5,564,731 - +0.0 5,564,733 + -0.3 5,564,837 + -0.9 5,564,838 - -0.6 5,564,877 + +1.8 5,564,877 + -0.2 5,564,878 - -0.1 5,564,887 - -0.2 5,564,942 + -0.5 5,564,973 - -0.4 5,564,976 + +2.0 5,564,976 + +4.1 5,564,977 - +1.4 5,565,001 + -0.8 5,565,002 - +1.1 5,565,179 + +0.8 5,565,180 - -2.3 5,565,180 - +0.3 5,565,180 - +0.3 5,565,180 - +2.4 5,565,188 + +1.1 5,565,188 + +1.9 5,565,188 + -0.8 5,565,188 + +0.1 5,565,188 + -1.5 5,565,188 + +0.4 5,565,188 + +1.4 5,565,189 - Echvi_4648 0.10 +0.4 5,565,189 - Echvi_4648 0.10 -1.5 5,565,189 - Echvi_4648 0.10 -0.9 5,565,194 + Echvi_4648 0.11 +0.5 5,565,195 - Echvi_4648 0.11 +2.0 5,565,195 - Echvi_4648 0.11 +0.8 5,565,221 + Echvi_4648 0.16 -0.3 5,565,251 + Echvi_4648 0.22 -2.0 5,565,252 - Echvi_4648 0.22 +2.7 5,565,435 - Echvi_4648 0.55 +0.5 5,565,435 - Echvi_4648 0.55 -1.9 5,565,446 + Echvi_4648 0.57 +0.5 5,565,446 + Echvi_4648 0.57 -0.0 5,565,447 - Echvi_4648 0.58 +1.3 5,565,468 + Echvi_4648 0.62 +2.0 5,565,537 + Echvi_4648 0.74 +1.6 5,565,538 - Echvi_4648 0.74 +0.9 5,565,538 - Echvi_4648 0.74 -2.5 5,565,539 + Echvi_4648 0.75 +0.3 5,565,540 - Echvi_4648 0.75 -0.5 5,565,549 + Echvi_4648 0.76 +0.8 5,565,549 + Echvi_4648 0.76 +1.7 5,565,549 + Echvi_4648 0.76 +0.0 5,565,550 - Echvi_4648 0.77 -1.3 5,565,550 - Echvi_4648 0.77 +1.0 5,565,618 + Echvi_4648 0.89 +0.9 5,565,618 + Echvi_4648 0.89 -1.4 5,565,619 - Echvi_4648 0.89 +1.0 5,565,619 - Echvi_4648 0.89 -0.6 5,565,619 - Echvi_4648 0.89 -0.7 5,565,641 + +0.8 5,565,641 + -2.0 5,565,641 + -1.0 5,565,642 - -0.8 5,565,652 + +1.5 5,565,653 - -0.5 5,565,653 - +0.3 5,565,675 - -1.0 5,565,680 + +0.9 5,565,699 + -2.3 5,565,710 - -1.5 5,565,710 - +0.1 5,565,710 - -0.0 5,565,711 + +1.0 5,565,711 + +0.4 5,565,711 + -0.5 5,565,712 - -1.3 5,565,717 + -0.1 5,565,718 - +0.7 5,565,721 + +0.1 5,565,730 - -0.1 5,565,730 - +0.2 5,565,768 + +0.8 5,565,813 - +0.2 5,566,039 + Echvi_4649 0.18 +1.1 5,566,063 + Echvi_4649 0.19 -1.0 5,566,212 + Echvi_4649 0.27 +0.3 5,566,213 - Echvi_4649 0.27 +0.3 5,566,213 - Echvi_4649 0.27 +2.5 5,566,285 - Echvi_4649 0.30 -1.9 5,566,291 - Echvi_4649 0.31 -1.5 5,566,312 + Echvi_4649 0.32 -1.9 5,566,312 + Echvi_4649 0.32 +0.7 5,566,312 + Echvi_4649 0.32 +0.5 5,566,312 + Echvi_4649 0.32 -0.5 5,566,312 + Echvi_4649 0.32 -0.0 5,566,313 - Echvi_4649 0.32 +0.3 5,566,313 - Echvi_4649 0.32 -0.2 5,566,419 + Echvi_4649 0.37 +0.5 5,566,481 + Echvi_4649 0.41 +1.3 5,566,481 + Echvi_4649 0.41 +0.4 5,566,484 + Echvi_4649 0.41 -0.5 5,566,531 + Echvi_4649 0.43 -1.7 5,566,535 + Echvi_4649 0.43 -0.2 5,566,616 + Echvi_4649 0.48 +1.0 5,566,617 - Echvi_4649 0.48 +0.1 5,566,630 + Echvi_4649 0.48 -0.3 5,566,630 + Echvi_4649 0.48 -0.3 5,566,631 - Echvi_4649 0.48 -0.6 5,566,631 - Echvi_4649 0.48 -0.3 5,566,632 + Echvi_4649 0.48 -0.1 5,566,632 + Echvi_4649 0.48 +2.5
Or see this region's nucleotide sequence