Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4641 and Echvi_4642 are separated by 5 nucleotides Echvi_4642 and Echvi_4643 are separated by 152 nucleotides Echvi_4643 and Echvi_4644 are separated by 67 nucleotides Echvi_4644 and Echvi_4645 are separated by 127 nucleotides
Echvi_4641: Echvi_4641 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 5,553,707 to 5,555,617
_4641
Echvi_4642: Echvi_4642 - Organic radical activating enzymes, at 5,555,623 to 5,556,249
_4642
Echvi_4643: Echvi_4643 - 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase, at 5,556,402 to 5,557,286
_4643
Echvi_4644: Echvi_4644 - S23 ribosomal protein., at 5,557,354 to 5,557,706
_4644
Echvi_4645: Echvi_4645 - GTP-binding protein LepA, at 5,557,834 to 5,559,660
_4645
Position (kb) 5556
5557
5558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5555.402 kb on + strand, within Echvi_4641 at 5555.402 kb on + strand, within Echvi_4641 at 5555.402 kb on + strand, within Echvi_4641 at 5555.422 kb on - strand, within Echvi_4641 at 5555.464 kb on - strand at 5555.522 kb on + strand at 5555.522 kb on + strand at 5555.522 kb on + strand at 5555.522 kb on + strand at 5555.522 kb on + strand at 5555.523 kb on - strand at 5555.523 kb on - strand at 5555.540 kb on - strand at 5555.551 kb on + strand at 5555.553 kb on + strand at 5555.554 kb on - strand at 5555.554 kb on - strand at 5555.554 kb on - strand at 5555.600 kb on + strand at 5555.624 kb on + strand at 5555.638 kb on - strand at 5555.706 kb on + strand, within Echvi_4642 at 5555.707 kb on - strand, within Echvi_4642 at 5555.820 kb on + strand, within Echvi_4642 at 5555.820 kb on + strand, within Echvi_4642 at 5555.821 kb on - strand, within Echvi_4642 at 5555.977 kb on + strand, within Echvi_4642 at 5555.985 kb on - strand, within Echvi_4642 at 5555.985 kb on - strand, within Echvi_4642 at 5556.030 kb on - strand, within Echvi_4642 at 5556.112 kb on + strand, within Echvi_4642 at 5556.113 kb on - strand, within Echvi_4642 at 5556.113 kb on - strand, within Echvi_4642 at 5556.136 kb on + strand, within Echvi_4642 at 5556.192 kb on - strand at 5556.250 kb on - strand at 5556.252 kb on + strand at 5556.254 kb on + strand at 5556.266 kb on + strand at 5556.289 kb on - strand at 5556.351 kb on + strand at 5556.351 kb on + strand at 5556.351 kb on + strand at 5556.362 kb on - strand at 5556.362 kb on - strand at 5556.409 kb on + strand at 5557.377 kb on + strand at 5557.381 kb on - strand at 5557.381 kb on - strand at 5557.390 kb on + strand, within Echvi_4644 at 5557.468 kb on + strand, within Echvi_4644 at 5557.469 kb on - strand, within Echvi_4644 at 5557.519 kb on + strand, within Echvi_4644 at 5557.588 kb on - strand, within Echvi_4644 at 5557.621 kb on - strand, within Echvi_4644 at 5557.622 kb on + strand, within Echvi_4644 at 5557.712 kb on - strand at 5557.728 kb on + strand at 5557.756 kb on - strand at 5557.775 kb on - strand at 5557.775 kb on - strand at 5557.809 kb on + strand at 5557.810 kb on - strand at 5557.829 kb on + strand at 5557.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 5,555,402 + Echvi_4641 0.89 -0.0 5,555,402 + Echvi_4641 0.89 +0.3 5,555,402 + Echvi_4641 0.89 +1.5 5,555,422 - Echvi_4641 0.90 +1.5 5,555,464 - +0.3 5,555,522 + +0.1 5,555,522 + -0.2 5,555,522 + -0.6 5,555,522 + +0.4 5,555,522 + +0.6 5,555,523 - -0.7 5,555,523 - +0.7 5,555,540 - +0.1 5,555,551 + -0.7 5,555,553 + +1.9 5,555,554 - +1.0 5,555,554 - +1.5 5,555,554 - -0.3 5,555,600 + +0.7 5,555,624 + +0.7 5,555,638 - +0.2 5,555,706 + Echvi_4642 0.13 -1.0 5,555,707 - Echvi_4642 0.13 -0.1 5,555,820 + Echvi_4642 0.31 +0.8 5,555,820 + Echvi_4642 0.31 -0.6 5,555,821 - Echvi_4642 0.32 +0.3 5,555,977 + Echvi_4642 0.56 -1.4 5,555,985 - Echvi_4642 0.58 -2.0 5,555,985 - Echvi_4642 0.58 -1.5 5,556,030 - Echvi_4642 0.65 -0.8 5,556,112 + Echvi_4642 0.78 -0.7 5,556,113 - Echvi_4642 0.78 -0.0 5,556,113 - Echvi_4642 0.78 -0.3 5,556,136 + Echvi_4642 0.82 -0.1 5,556,192 - -0.9 5,556,250 - +0.1 5,556,252 + +1.1 5,556,254 + -0.6 5,556,266 + -0.3 5,556,289 - -0.2 5,556,351 + -0.3 5,556,351 + -1.0 5,556,351 + -0.2 5,556,362 - -2.8 5,556,362 - +0.3 5,556,409 + -0.7 5,557,377 + +0.5 5,557,381 - -1.3 5,557,381 - -1.0 5,557,390 + Echvi_4644 0.10 +0.5 5,557,468 + Echvi_4644 0.32 -3.3 5,557,469 - Echvi_4644 0.33 +0.6 5,557,519 + Echvi_4644 0.47 -0.9 5,557,588 - Echvi_4644 0.66 +0.1 5,557,621 - Echvi_4644 0.76 +1.7 5,557,622 + Echvi_4644 0.76 -1.0 5,557,712 - -0.8 5,557,728 + -1.7 5,557,756 - -0.7 5,557,775 - +1.4 5,557,775 - -1.3 5,557,809 + -1.6 5,557,810 - +1.0 5,557,829 + -0.2 5,557,936 - -1.8
Or see this region's nucleotide sequence