Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3472

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3470 and Echvi_3471 are separated by 0 nucleotidesEchvi_3471 and Echvi_3472 are separated by 17 nucleotidesEchvi_3472 and Echvi_3473 are separated by 113 nucleotides Echvi_3470: Echvi_3470 - DNA-3-methyladenine glycosylase (3mg), at 4,109,442 to 4,110,056 _3470 Echvi_3471: Echvi_3471 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 4,110,057 to 4,110,977 _3471 Echvi_3472: Echvi_3472 - Universal stress protein UspA and related nucleotide-binding proteins, at 4,110,995 to 4,111,828 _3472 Echvi_3473: Echvi_3473 - Tetratricopeptide repeat., at 4,111,942 to 4,112,664 _3473 Position (kb) 4110 4111 4112Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4110.021 kb on + strandat 4110.022 kb on - strandat 4110.025 kb on + strandat 4110.032 kb on + strandat 4110.033 kb on - strandat 4110.044 kb on - strandat 4110.054 kb on + strandat 4110.071 kb on + strandat 4110.071 kb on + strandat 4110.071 kb on + strandat 4110.073 kb on + strandat 4110.073 kb on + strandat 4110.073 kb on + strandat 4110.081 kb on - strandat 4110.092 kb on + strandat 4110.093 kb on - strandat 4110.114 kb on - strandat 4110.175 kb on + strand, within Echvi_3471at 4110.185 kb on + strand, within Echvi_3471at 4110.186 kb on - strand, within Echvi_3471at 4110.190 kb on + strand, within Echvi_3471at 4110.233 kb on - strand, within Echvi_3471at 4110.239 kb on + strand, within Echvi_3471at 4110.239 kb on + strand, within Echvi_3471at 4110.239 kb on + strand, within Echvi_3471at 4110.239 kb on + strand, within Echvi_3471at 4110.239 kb on + strand, within Echvi_3471at 4110.239 kb on + strand, within Echvi_3471at 4110.240 kb on - strand, within Echvi_3471at 4110.240 kb on - strand, within Echvi_3471at 4110.241 kb on + strand, within Echvi_3471at 4110.241 kb on + strand, within Echvi_3471at 4110.241 kb on + strand, within Echvi_3471at 4110.241 kb on + strand, within Echvi_3471at 4110.241 kb on + strand, within Echvi_3471at 4110.241 kb on + strand, within Echvi_3471at 4110.241 kb on + strand, within Echvi_3471at 4110.241 kb on + strand, within Echvi_3471at 4110.241 kb on + strand, within Echvi_3471at 4110.242 kb on - strand, within Echvi_3471at 4110.242 kb on - strand, within Echvi_3471at 4110.242 kb on - strand, within Echvi_3471at 4110.284 kb on + strand, within Echvi_3471at 4110.284 kb on + strand, within Echvi_3471at 4110.351 kb on + strand, within Echvi_3471at 4110.351 kb on + strand, within Echvi_3471at 4110.351 kb on + strand, within Echvi_3471at 4110.351 kb on + strand, within Echvi_3471at 4110.352 kb on - strand, within Echvi_3471at 4110.408 kb on - strand, within Echvi_3471at 4110.452 kb on - strand, within Echvi_3471at 4110.457 kb on + strand, within Echvi_3471at 4110.457 kb on + strand, within Echvi_3471at 4110.505 kb on + strand, within Echvi_3471at 4110.506 kb on - strand, within Echvi_3471at 4110.571 kb on - strand, within Echvi_3471at 4110.573 kb on + strand, within Echvi_3471at 4110.573 kb on + strand, within Echvi_3471at 4110.576 kb on + strand, within Echvi_3471at 4110.623 kb on - strand, within Echvi_3471at 4110.623 kb on - strand, within Echvi_3471at 4110.665 kb on + strand, within Echvi_3471at 4110.700 kb on - strand, within Echvi_3471at 4110.855 kb on - strand, within Echvi_3471at 4110.873 kb on - strand, within Echvi_3471at 4110.915 kb on + strandat 4110.918 kb on - strandat 4110.975 kb on + strandat 4110.976 kb on - strandat 4110.976 kb on - strandat 4110.979 kb on + strandat 4110.983 kb on + strandat 4111.000 kb on + strandat 4111.058 kb on + strandat 4111.058 kb on + strandat 4111.127 kb on + strand, within Echvi_3472at 4111.127 kb on + strand, within Echvi_3472at 4111.127 kb on + strand, within Echvi_3472at 4111.128 kb on - strand, within Echvi_3472at 4111.128 kb on - strand, within Echvi_3472at 4111.129 kb on + strand, within Echvi_3472at 4111.130 kb on - strand, within Echvi_3472at 4111.130 kb on - strand, within Echvi_3472at 4111.206 kb on + strand, within Echvi_3472at 4111.220 kb on - strand, within Echvi_3472at 4111.289 kb on + strand, within Echvi_3472at 4111.363 kb on - strand, within Echvi_3472at 4111.384 kb on - strand, within Echvi_3472at 4111.469 kb on + strand, within Echvi_3472at 4111.484 kb on - strand, within Echvi_3472at 4111.488 kb on + strand, within Echvi_3472at 4111.488 kb on + strand, within Echvi_3472at 4111.488 kb on + strand, within Echvi_3472at 4111.488 kb on + strand, within Echvi_3472at 4111.489 kb on - strand, within Echvi_3472at 4111.489 kb on - strand, within Echvi_3472at 4111.640 kb on + strand, within Echvi_3472at 4111.641 kb on - strand, within Echvi_3472at 4111.641 kb on - strand, within Echvi_3472at 4111.647 kb on + strand, within Echvi_3472at 4111.668 kb on + strand, within Echvi_3472at 4111.669 kb on - strand, within Echvi_3472at 4111.669 kb on - strand, within Echvi_3472at 4111.689 kb on - strand, within Echvi_3472at 4111.726 kb on + strand, within Echvi_3472at 4111.787 kb on + strandat 4111.788 kb on - strandat 4111.788 kb on - strandat 4111.788 kb on - strandat 4111.827 kb on - strandat 4111.827 kb on - strandat 4111.835 kb on + strandat 4111.836 kb on - strandat 4111.841 kb on + strandat 4111.841 kb on + strandat 4111.842 kb on - strandat 4111.842 kb on - strandat 4111.843 kb on + strandat 4111.844 kb on - strandat 4111.844 kb on - strandat 4111.935 kb on - strandat 4111.943 kb on + strandat 4112.040 kb on + strand, within Echvi_3473at 4112.067 kb on + strand, within Echvi_3473at 4112.067 kb on + strand, within Echvi_3473at 4112.067 kb on + strand, within Echvi_3473at 4112.067 kb on + strand, within Echvi_3473at 4112.068 kb on - strand, within Echvi_3473at 4112.145 kb on + strand, within Echvi_3473at 4112.145 kb on + strand, within Echvi_3473at 4112.148 kb on - strand, within Echvi_3473at 4112.162 kb on + strand, within Echvi_3473at 4112.167 kb on + strand, within Echvi_3473at 4112.168 kb on - strand, within Echvi_3473at 4112.168 kb on - strand, within Echvi_3473at 4112.168 kb on - strand, within Echvi_3473at 4112.211 kb on + strand, within Echvi_3473at 4112.211 kb on + strand, within Echvi_3473at 4112.212 kb on - strand, within Echvi_3473at 4112.212 kb on - strand, within Echvi_3473at 4112.332 kb on + strand, within Echvi_3473at 4112.454 kb on + strand, within Echvi_3473at 4112.468 kb on + strand, within Echvi_3473at 4112.469 kb on - strand, within Echvi_3473at 4112.622 kb on + strandat 4112.623 kb on - strandat 4112.696 kb on + strandat 4112.700 kb on - strandat 4112.700 kb on - strandat 4112.700 kb on - strandat 4112.705 kb on + strandat 4112.705 kb on + strandat 4112.712 kb on - strandat 4112.737 kb on - strandat 4112.737 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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4,110,021 + -2.4
4,110,022 - +2.0
4,110,025 + -1.0
4,110,032 + -0.6
4,110,033 - +1.2
4,110,044 - +2.0
4,110,054 + -2.7
4,110,071 + -2.0
4,110,071 + -0.4
4,110,071 + -2.9
4,110,073 + -2.8
4,110,073 + -2.6
4,110,073 + -1.6
4,110,081 - +1.6
4,110,092 + -0.8
4,110,093 - +1.6
4,110,114 - +0.7
4,110,175 + Echvi_3471 0.13 -3.0
4,110,185 + Echvi_3471 0.14 -2.4
4,110,186 - Echvi_3471 0.14 +2.4
4,110,190 + Echvi_3471 0.14 -4.1
4,110,233 - Echvi_3471 0.19 +0.4
4,110,239 + Echvi_3471 0.20 -1.6
4,110,239 + Echvi_3471 0.20 -3.2
4,110,239 + Echvi_3471 0.20 -3.0
4,110,239 + Echvi_3471 0.20 -0.0
4,110,239 + Echvi_3471 0.20 -0.8
4,110,239 + Echvi_3471 0.20 -0.6
4,110,240 - Echvi_3471 0.20 +1.4
4,110,240 - Echvi_3471 0.20 +1.2
4,110,241 + Echvi_3471 0.20 -0.6
4,110,241 + Echvi_3471 0.20 -2.2
4,110,241 + Echvi_3471 0.20 -0.8
4,110,241 + Echvi_3471 0.20 -2.5
4,110,241 + Echvi_3471 0.20 -2.8
4,110,241 + Echvi_3471 0.20 -1.2
4,110,241 + Echvi_3471 0.20 -1.8
4,110,241 + Echvi_3471 0.20 -0.0
4,110,241 + Echvi_3471 0.20 -2.2
4,110,242 - Echvi_3471 0.20 +1.6
4,110,242 - Echvi_3471 0.20 +1.7
4,110,242 - Echvi_3471 0.20 +1.5
4,110,284 + Echvi_3471 0.25 -0.8
4,110,284 + Echvi_3471 0.25 -3.0
4,110,351 + Echvi_3471 0.32 -1.5
4,110,351 + Echvi_3471 0.32 -0.4
4,110,351 + Echvi_3471 0.32 -0.6
4,110,351 + Echvi_3471 0.32 -3.5
4,110,352 - Echvi_3471 0.32 +1.8
4,110,408 - Echvi_3471 0.38 +0.6
4,110,452 - Echvi_3471 0.43 -0.8
4,110,457 + Echvi_3471 0.43 -2.4
4,110,457 + Echvi_3471 0.43 -1.4
4,110,505 + Echvi_3471 0.49 -1.7
4,110,506 - Echvi_3471 0.49 +0.3
4,110,571 - Echvi_3471 0.56 +0.9
4,110,573 + Echvi_3471 0.56 -2.7
4,110,573 + Echvi_3471 0.56 -2.9
4,110,576 + Echvi_3471 0.56 +0.4
4,110,623 - Echvi_3471 0.61 -0.6
4,110,623 - Echvi_3471 0.61 -0.6
4,110,665 + Echvi_3471 0.66 -2.3
4,110,700 - Echvi_3471 0.70 +0.8
4,110,855 - Echvi_3471 0.87 +3.1
4,110,873 - Echvi_3471 0.89 +1.5
4,110,915 + -0.8
4,110,918 - +1.9
4,110,975 + -1.7
4,110,976 - +1.9
4,110,976 - +2.4
4,110,979 + -1.0
4,110,983 + +0.2
4,111,000 + +1.0
4,111,058 + +0.0
4,111,058 + +3.5
4,111,127 + Echvi_3472 0.16 +2.4
4,111,127 + Echvi_3472 0.16 +0.2
4,111,127 + Echvi_3472 0.16 +1.3
4,111,128 - Echvi_3472 0.16 +2.1
4,111,128 - Echvi_3472 0.16 +1.5
4,111,129 + Echvi_3472 0.16 +2.2
4,111,130 - Echvi_3472 0.16 +1.4
4,111,130 - Echvi_3472 0.16 +1.0
4,111,206 + Echvi_3472 0.25 +2.0
4,111,220 - Echvi_3472 0.27 +2.5
4,111,289 + Echvi_3472 0.35 +1.3
4,111,363 - Echvi_3472 0.44 +1.8
4,111,384 - Echvi_3472 0.47 +1.5
4,111,469 + Echvi_3472 0.57 +1.5
4,111,484 - Echvi_3472 0.59 +2.6
4,111,488 + Echvi_3472 0.59 +1.7
4,111,488 + Echvi_3472 0.59 +3.9
4,111,488 + Echvi_3472 0.59 +2.3
4,111,488 + Echvi_3472 0.59 +1.9
4,111,489 - Echvi_3472 0.59 +0.6
4,111,489 - Echvi_3472 0.59 +2.2
4,111,640 + Echvi_3472 0.77 -2.7
4,111,641 - Echvi_3472 0.77 +2.6
4,111,641 - Echvi_3472 0.77 +1.5
4,111,647 + Echvi_3472 0.78 +1.8
4,111,668 + Echvi_3472 0.81 +1.0
4,111,669 - Echvi_3472 0.81 +2.2
4,111,669 - Echvi_3472 0.81 +2.4
4,111,689 - Echvi_3472 0.83 +2.7
4,111,726 + Echvi_3472 0.88 +2.0
4,111,787 + +2.2
4,111,788 - +1.3
4,111,788 - +2.6
4,111,788 - +1.1
4,111,827 - +0.2
4,111,827 - +0.2
4,111,835 + -1.9
4,111,836 - -1.1
4,111,841 + +0.1
4,111,841 + -0.3
4,111,842 - +0.5
4,111,842 - +0.2
4,111,843 + +0.6
4,111,844 - +1.1
4,111,844 - -1.7
4,111,935 - +0.5
4,111,943 + -0.3
4,112,040 + Echvi_3473 0.14 -0.7
4,112,067 + Echvi_3473 0.17 -1.5
4,112,067 + Echvi_3473 0.17 -0.2
4,112,067 + Echvi_3473 0.17 +0.1
4,112,067 + Echvi_3473 0.17 -0.6
4,112,068 - Echvi_3473 0.17 +0.8
4,112,145 + Echvi_3473 0.28 -0.3
4,112,145 + Echvi_3473 0.28 +3.0
4,112,148 - Echvi_3473 0.28 +0.3
4,112,162 + Echvi_3473 0.30 -0.1
4,112,167 + Echvi_3473 0.31 -0.0
4,112,168 - Echvi_3473 0.31 -1.0
4,112,168 - Echvi_3473 0.31 +1.3
4,112,168 - Echvi_3473 0.31 +0.0
4,112,211 + Echvi_3473 0.37 -0.2
4,112,211 + Echvi_3473 0.37 -0.0
4,112,212 - Echvi_3473 0.37 -1.5
4,112,212 - Echvi_3473 0.37 -0.1
4,112,332 + Echvi_3473 0.54 +0.7
4,112,454 + Echvi_3473 0.71 +1.4
4,112,468 + Echvi_3473 0.73 -2.3
4,112,469 - Echvi_3473 0.73 +0.2
4,112,622 + -1.0
4,112,623 - +0.2
4,112,696 + +0.1
4,112,700 - +0.4
4,112,700 - -0.6
4,112,700 - -2.4
4,112,705 + -0.1
4,112,705 + -1.4
4,112,712 - -2.0
4,112,737 - +0.2
4,112,737 - +0.8

Or see this region's nucleotide sequence