Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3470 and Echvi_3471 are separated by 0 nucleotides Echvi_3471 and Echvi_3472 are separated by 17 nucleotides Echvi_3472 and Echvi_3473 are separated by 113 nucleotides
Echvi_3470: Echvi_3470 - DNA-3-methyladenine glycosylase (3mg), at 4,109,442 to 4,110,056
_3470
Echvi_3471: Echvi_3471 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 4,110,057 to 4,110,977
_3471
Echvi_3472: Echvi_3472 - Universal stress protein UspA and related nucleotide-binding proteins, at 4,110,995 to 4,111,828
_3472
Echvi_3473: Echvi_3473 - Tetratricopeptide repeat., at 4,111,942 to 4,112,664
_3473
Position (kb)
4110
4111
4112 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4110.021 kb on + strand at 4110.022 kb on - strand at 4110.025 kb on + strand at 4110.032 kb on + strand at 4110.033 kb on - strand at 4110.044 kb on - strand at 4110.054 kb on + strand at 4110.071 kb on + strand at 4110.071 kb on + strand at 4110.071 kb on + strand at 4110.073 kb on + strand at 4110.073 kb on + strand at 4110.073 kb on + strand at 4110.081 kb on - strand at 4110.092 kb on + strand at 4110.093 kb on - strand at 4110.114 kb on - strand at 4110.175 kb on + strand, within Echvi_3471 at 4110.185 kb on + strand, within Echvi_3471 at 4110.186 kb on - strand, within Echvi_3471 at 4110.190 kb on + strand, within Echvi_3471 at 4110.233 kb on - strand, within Echvi_3471 at 4110.239 kb on + strand, within Echvi_3471 at 4110.239 kb on + strand, within Echvi_3471 at 4110.239 kb on + strand, within Echvi_3471 at 4110.239 kb on + strand, within Echvi_3471 at 4110.239 kb on + strand, within Echvi_3471 at 4110.239 kb on + strand, within Echvi_3471 at 4110.240 kb on - strand, within Echvi_3471 at 4110.240 kb on - strand, within Echvi_3471 at 4110.241 kb on + strand, within Echvi_3471 at 4110.241 kb on + strand, within Echvi_3471 at 4110.241 kb on + strand, within Echvi_3471 at 4110.241 kb on + strand, within Echvi_3471 at 4110.241 kb on + strand, within Echvi_3471 at 4110.241 kb on + strand, within Echvi_3471 at 4110.241 kb on + strand, within Echvi_3471 at 4110.241 kb on + strand, within Echvi_3471 at 4110.241 kb on + strand, within Echvi_3471 at 4110.242 kb on - strand, within Echvi_3471 at 4110.242 kb on - strand, within Echvi_3471 at 4110.242 kb on - strand, within Echvi_3471 at 4110.284 kb on + strand, within Echvi_3471 at 4110.284 kb on + strand, within Echvi_3471 at 4110.351 kb on + strand, within Echvi_3471 at 4110.351 kb on + strand, within Echvi_3471 at 4110.351 kb on + strand, within Echvi_3471 at 4110.351 kb on + strand, within Echvi_3471 at 4110.352 kb on - strand, within Echvi_3471 at 4110.408 kb on - strand, within Echvi_3471 at 4110.452 kb on - strand, within Echvi_3471 at 4110.457 kb on + strand, within Echvi_3471 at 4110.457 kb on + strand, within Echvi_3471 at 4110.505 kb on + strand, within Echvi_3471 at 4110.506 kb on - strand, within Echvi_3471 at 4110.571 kb on - strand, within Echvi_3471 at 4110.573 kb on + strand, within Echvi_3471 at 4110.573 kb on + strand, within Echvi_3471 at 4110.576 kb on + strand, within Echvi_3471 at 4110.623 kb on - strand, within Echvi_3471 at 4110.623 kb on - strand, within Echvi_3471 at 4110.665 kb on + strand, within Echvi_3471 at 4110.700 kb on - strand, within Echvi_3471 at 4110.855 kb on - strand, within Echvi_3471 at 4110.873 kb on - strand, within Echvi_3471 at 4110.915 kb on + strand at 4110.918 kb on - strand at 4110.975 kb on + strand at 4110.976 kb on - strand at 4110.976 kb on - strand at 4110.979 kb on + strand at 4110.983 kb on + strand at 4111.000 kb on + strand at 4111.058 kb on + strand at 4111.058 kb on + strand at 4111.127 kb on + strand, within Echvi_3472 at 4111.127 kb on + strand, within Echvi_3472 at 4111.127 kb on + strand, within Echvi_3472 at 4111.128 kb on - strand, within Echvi_3472 at 4111.128 kb on - strand, within Echvi_3472 at 4111.129 kb on + strand, within Echvi_3472 at 4111.130 kb on - strand, within Echvi_3472 at 4111.130 kb on - strand, within Echvi_3472 at 4111.206 kb on + strand, within Echvi_3472 at 4111.220 kb on - strand, within Echvi_3472 at 4111.289 kb on + strand, within Echvi_3472 at 4111.363 kb on - strand, within Echvi_3472 at 4111.384 kb on - strand, within Echvi_3472 at 4111.469 kb on + strand, within Echvi_3472 at 4111.484 kb on - strand, within Echvi_3472 at 4111.488 kb on + strand, within Echvi_3472 at 4111.488 kb on + strand, within Echvi_3472 at 4111.488 kb on + strand, within Echvi_3472 at 4111.488 kb on + strand, within Echvi_3472 at 4111.489 kb on - strand, within Echvi_3472 at 4111.489 kb on - strand, within Echvi_3472 at 4111.640 kb on + strand, within Echvi_3472 at 4111.641 kb on - strand, within Echvi_3472 at 4111.641 kb on - strand, within Echvi_3472 at 4111.647 kb on + strand, within Echvi_3472 at 4111.668 kb on + strand, within Echvi_3472 at 4111.669 kb on - strand, within Echvi_3472 at 4111.669 kb on - strand, within Echvi_3472 at 4111.689 kb on - strand, within Echvi_3472 at 4111.726 kb on + strand, within Echvi_3472 at 4111.787 kb on + strand at 4111.788 kb on - strand at 4111.788 kb on - strand at 4111.788 kb on - strand at 4111.827 kb on - strand at 4111.827 kb on - strand at 4111.835 kb on + strand at 4111.836 kb on - strand at 4111.841 kb on + strand at 4111.841 kb on + strand at 4111.842 kb on - strand at 4111.842 kb on - strand at 4111.843 kb on + strand at 4111.844 kb on - strand at 4111.844 kb on - strand at 4111.935 kb on - strand at 4111.943 kb on + strand at 4112.040 kb on + strand, within Echvi_3473 at 4112.067 kb on + strand, within Echvi_3473 at 4112.067 kb on + strand, within Echvi_3473 at 4112.067 kb on + strand, within Echvi_3473 at 4112.067 kb on + strand, within Echvi_3473 at 4112.068 kb on - strand, within Echvi_3473 at 4112.145 kb on + strand, within Echvi_3473 at 4112.145 kb on + strand, within Echvi_3473 at 4112.148 kb on - strand, within Echvi_3473 at 4112.162 kb on + strand, within Echvi_3473 at 4112.167 kb on + strand, within Echvi_3473 at 4112.168 kb on - strand, within Echvi_3473 at 4112.168 kb on - strand, within Echvi_3473 at 4112.168 kb on - strand, within Echvi_3473 at 4112.211 kb on + strand, within Echvi_3473 at 4112.211 kb on + strand, within Echvi_3473 at 4112.212 kb on - strand, within Echvi_3473 at 4112.212 kb on - strand, within Echvi_3473 at 4112.332 kb on + strand, within Echvi_3473 at 4112.454 kb on + strand, within Echvi_3473 at 4112.468 kb on + strand, within Echvi_3473 at 4112.469 kb on - strand, within Echvi_3473 at 4112.622 kb on + strand at 4112.623 kb on - strand at 4112.696 kb on + strand at 4112.700 kb on - strand at 4112.700 kb on - strand at 4112.700 kb on - strand at 4112.705 kb on + strand at 4112.705 kb on + strand at 4112.712 kb on - strand at 4112.737 kb on - strand at 4112.737 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 4,110,021 + -2.4 4,110,022 - +2.0 4,110,025 + -1.0 4,110,032 + -0.6 4,110,033 - +1.2 4,110,044 - +2.0 4,110,054 + -2.7 4,110,071 + -2.0 4,110,071 + -0.4 4,110,071 + -2.9 4,110,073 + -2.8 4,110,073 + -2.6 4,110,073 + -1.6 4,110,081 - +1.6 4,110,092 + -0.8 4,110,093 - +1.6 4,110,114 - +0.7 4,110,175 + Echvi_3471 0.13 -3.0 4,110,185 + Echvi_3471 0.14 -2.4 4,110,186 - Echvi_3471 0.14 +2.4 4,110,190 + Echvi_3471 0.14 -4.1 4,110,233 - Echvi_3471 0.19 +0.4 4,110,239 + Echvi_3471 0.20 -1.6 4,110,239 + Echvi_3471 0.20 -3.2 4,110,239 + Echvi_3471 0.20 -3.0 4,110,239 + Echvi_3471 0.20 -0.0 4,110,239 + Echvi_3471 0.20 -0.8 4,110,239 + Echvi_3471 0.20 -0.6 4,110,240 - Echvi_3471 0.20 +1.4 4,110,240 - Echvi_3471 0.20 +1.2 4,110,241 + Echvi_3471 0.20 -0.6 4,110,241 + Echvi_3471 0.20 -2.2 4,110,241 + Echvi_3471 0.20 -0.8 4,110,241 + Echvi_3471 0.20 -2.5 4,110,241 + Echvi_3471 0.20 -2.8 4,110,241 + Echvi_3471 0.20 -1.2 4,110,241 + Echvi_3471 0.20 -1.8 4,110,241 + Echvi_3471 0.20 -0.0 4,110,241 + Echvi_3471 0.20 -2.2 4,110,242 - Echvi_3471 0.20 +1.6 4,110,242 - Echvi_3471 0.20 +1.7 4,110,242 - Echvi_3471 0.20 +1.5 4,110,284 + Echvi_3471 0.25 -0.8 4,110,284 + Echvi_3471 0.25 -3.0 4,110,351 + Echvi_3471 0.32 -1.5 4,110,351 + Echvi_3471 0.32 -0.4 4,110,351 + Echvi_3471 0.32 -0.6 4,110,351 + Echvi_3471 0.32 -3.5 4,110,352 - Echvi_3471 0.32 +1.8 4,110,408 - Echvi_3471 0.38 +0.6 4,110,452 - Echvi_3471 0.43 -0.8 4,110,457 + Echvi_3471 0.43 -2.4 4,110,457 + Echvi_3471 0.43 -1.4 4,110,505 + Echvi_3471 0.49 -1.7 4,110,506 - Echvi_3471 0.49 +0.3 4,110,571 - Echvi_3471 0.56 +0.9 4,110,573 + Echvi_3471 0.56 -2.7 4,110,573 + Echvi_3471 0.56 -2.9 4,110,576 + Echvi_3471 0.56 +0.4 4,110,623 - Echvi_3471 0.61 -0.6 4,110,623 - Echvi_3471 0.61 -0.6 4,110,665 + Echvi_3471 0.66 -2.3 4,110,700 - Echvi_3471 0.70 +0.8 4,110,855 - Echvi_3471 0.87 +3.1 4,110,873 - Echvi_3471 0.89 +1.5 4,110,915 + -0.8 4,110,918 - +1.9 4,110,975 + -1.7 4,110,976 - +1.9 4,110,976 - +2.4 4,110,979 + -1.0 4,110,983 + +0.2 4,111,000 + +1.0 4,111,058 + +0.0 4,111,058 + +3.5 4,111,127 + Echvi_3472 0.16 +2.4 4,111,127 + Echvi_3472 0.16 +0.2 4,111,127 + Echvi_3472 0.16 +1.3 4,111,128 - Echvi_3472 0.16 +2.1 4,111,128 - Echvi_3472 0.16 +1.5 4,111,129 + Echvi_3472 0.16 +2.2 4,111,130 - Echvi_3472 0.16 +1.4 4,111,130 - Echvi_3472 0.16 +1.0 4,111,206 + Echvi_3472 0.25 +2.0 4,111,220 - Echvi_3472 0.27 +2.5 4,111,289 + Echvi_3472 0.35 +1.3 4,111,363 - Echvi_3472 0.44 +1.8 4,111,384 - Echvi_3472 0.47 +1.5 4,111,469 + Echvi_3472 0.57 +1.5 4,111,484 - Echvi_3472 0.59 +2.6 4,111,488 + Echvi_3472 0.59 +1.7 4,111,488 + Echvi_3472 0.59 +3.9 4,111,488 + Echvi_3472 0.59 +2.3 4,111,488 + Echvi_3472 0.59 +1.9 4,111,489 - Echvi_3472 0.59 +0.6 4,111,489 - Echvi_3472 0.59 +2.2 4,111,640 + Echvi_3472 0.77 -2.7 4,111,641 - Echvi_3472 0.77 +2.6 4,111,641 - Echvi_3472 0.77 +1.5 4,111,647 + Echvi_3472 0.78 +1.8 4,111,668 + Echvi_3472 0.81 +1.0 4,111,669 - Echvi_3472 0.81 +2.2 4,111,669 - Echvi_3472 0.81 +2.4 4,111,689 - Echvi_3472 0.83 +2.7 4,111,726 + Echvi_3472 0.88 +2.0 4,111,787 + +2.2 4,111,788 - +1.3 4,111,788 - +2.6 4,111,788 - +1.1 4,111,827 - +0.2 4,111,827 - +0.2 4,111,835 + -1.9 4,111,836 - -1.1 4,111,841 + +0.1 4,111,841 + -0.3 4,111,842 - +0.5 4,111,842 - +0.2 4,111,843 + +0.6 4,111,844 - +1.1 4,111,844 - -1.7 4,111,935 - +0.5 4,111,943 + -0.3 4,112,040 + Echvi_3473 0.14 -0.7 4,112,067 + Echvi_3473 0.17 -1.5 4,112,067 + Echvi_3473 0.17 -0.2 4,112,067 + Echvi_3473 0.17 +0.1 4,112,067 + Echvi_3473 0.17 -0.6 4,112,068 - Echvi_3473 0.17 +0.8 4,112,145 + Echvi_3473 0.28 -0.3 4,112,145 + Echvi_3473 0.28 +3.0 4,112,148 - Echvi_3473 0.28 +0.3 4,112,162 + Echvi_3473 0.30 -0.1 4,112,167 + Echvi_3473 0.31 -0.0 4,112,168 - Echvi_3473 0.31 -1.0 4,112,168 - Echvi_3473 0.31 +1.3 4,112,168 - Echvi_3473 0.31 +0.0 4,112,211 + Echvi_3473 0.37 -0.2 4,112,211 + Echvi_3473 0.37 -0.0 4,112,212 - Echvi_3473 0.37 -1.5 4,112,212 - Echvi_3473 0.37 -0.1 4,112,332 + Echvi_3473 0.54 +0.7 4,112,454 + Echvi_3473 0.71 +1.4 4,112,468 + Echvi_3473 0.73 -2.3 4,112,469 - Echvi_3473 0.73 +0.2 4,112,622 + -1.0 4,112,623 - +0.2 4,112,696 + +0.1 4,112,700 - +0.4 4,112,700 - -0.6 4,112,700 - -2.4 4,112,705 + -0.1 4,112,705 + -1.4 4,112,712 - -2.0 4,112,737 - +0.2 4,112,737 - +0.8
Or see this region's nucleotide sequence