Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3350 and Echvi_3351 are separated by 84 nucleotides Echvi_3351 and Echvi_3352 are separated by 420 nucleotides
Echvi_3350: Echvi_3350 - Predicted SAM-dependent methyltransferases, at 3,954,137 to 3,955,318
_3350
Echvi_3351: Echvi_3351 - ATPase components of ABC transporters with duplicated ATPase domains, at 3,955,403 to 3,957,022
_3351
Echvi_3352: Echvi_3352 - drug resistance transporter, Bcr/CflA subfamily, at 3,957,443 to 3,958,681
_3352
Position (kb)
3955
3956
3957
3958 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3954.448 kb on - strand, within Echvi_3350 at 3954.448 kb on - strand, within Echvi_3350 at 3954.472 kb on - strand, within Echvi_3350 at 3954.472 kb on - strand, within Echvi_3350 at 3954.472 kb on - strand, within Echvi_3350 at 3954.531 kb on - strand, within Echvi_3350 at 3954.630 kb on + strand, within Echvi_3350 at 3954.666 kb on + strand, within Echvi_3350 at 3954.667 kb on - strand, within Echvi_3350 at 3954.768 kb on - strand, within Echvi_3350 at 3954.912 kb on + strand, within Echvi_3350 at 3954.912 kb on + strand, within Echvi_3350 at 3954.912 kb on + strand, within Echvi_3350 at 3954.912 kb on + strand, within Echvi_3350 at 3954.913 kb on - strand, within Echvi_3350 at 3954.954 kb on + strand, within Echvi_3350 at 3955.121 kb on - strand, within Echvi_3350 at 3955.308 kb on + strand at 3955.309 kb on - strand at 3955.312 kb on + strand at 3955.312 kb on + strand at 3955.312 kb on + strand at 3955.313 kb on - strand at 3955.313 kb on - strand at 3955.319 kb on - strand at 3955.324 kb on + strand at 3955.324 kb on + strand at 3955.325 kb on - strand at 3955.399 kb on - strand at 3955.458 kb on + strand at 3955.458 kb on + strand at 3955.459 kb on - strand at 3955.467 kb on + strand at 3955.467 kb on + strand at 3955.468 kb on - strand at 3955.496 kb on - strand at 3955.509 kb on - strand at 3955.516 kb on + strand at 3955.516 kb on + strand at 3955.548 kb on + strand at 3955.549 kb on - strand at 3955.556 kb on + strand at 3955.556 kb on + strand at 3955.581 kb on - strand, within Echvi_3351 at 3955.581 kb on - strand, within Echvi_3351 at 3955.843 kb on - strand, within Echvi_3351 at 3955.895 kb on - strand, within Echvi_3351 at 3956.010 kb on - strand, within Echvi_3351 at 3956.023 kb on - strand, within Echvi_3351 at 3956.023 kb on - strand, within Echvi_3351 at 3956.023 kb on - strand, within Echvi_3351 at 3956.117 kb on - strand, within Echvi_3351 at 3956.117 kb on - strand, within Echvi_3351 at 3956.122 kb on + strand, within Echvi_3351 at 3956.311 kb on + strand, within Echvi_3351 at 3956.317 kb on + strand, within Echvi_3351 at 3956.318 kb on - strand, within Echvi_3351 at 3956.318 kb on - strand, within Echvi_3351 at 3956.325 kb on + strand, within Echvi_3351 at 3956.339 kb on - strand, within Echvi_3351 at 3956.716 kb on - strand, within Echvi_3351 at 3956.745 kb on + strand, within Echvi_3351 at 3956.745 kb on + strand, within Echvi_3351 at 3956.746 kb on - strand, within Echvi_3351 at 3956.781 kb on - strand, within Echvi_3351 at 3956.828 kb on - strand, within Echvi_3351 at 3956.849 kb on + strand, within Echvi_3351 at 3956.849 kb on + strand, within Echvi_3351 at 3956.849 kb on + strand, within Echvi_3351 at 3956.849 kb on + strand, within Echvi_3351 at 3956.849 kb on + strand, within Echvi_3351 at 3956.850 kb on - strand, within Echvi_3351 at 3956.850 kb on - strand, within Echvi_3351 at 3956.850 kb on - strand, within Echvi_3351 at 3956.850 kb on - strand, within Echvi_3351 at 3956.851 kb on + strand, within Echvi_3351 at 3956.864 kb on - strand at 3956.934 kb on + strand at 3956.934 kb on + strand at 3956.934 kb on + strand at 3956.935 kb on - strand at 3956.957 kb on + strand at 3956.958 kb on - strand at 3956.964 kb on - strand at 3957.008 kb on - strand at 3957.008 kb on - strand at 3957.008 kb on - strand at 3957.008 kb on - strand at 3957.119 kb on - strand at 3957.119 kb on - strand at 3957.147 kb on - strand at 3957.150 kb on + strand at 3957.150 kb on + strand at 3957.150 kb on + strand at 3957.151 kb on - strand at 3957.225 kb on + strand at 3957.225 kb on + strand at 3957.226 kb on - strand at 3957.280 kb on + strand at 3957.297 kb on + strand at 3957.297 kb on + strand at 3957.297 kb on + strand at 3957.297 kb on + strand at 3957.298 kb on - strand at 3957.315 kb on - strand at 3957.323 kb on + strand at 3957.323 kb on + strand at 3957.324 kb on - strand at 3957.324 kb on - strand at 3957.349 kb on + strand at 3957.350 kb on - strand at 3957.350 kb on - strand at 3957.350 kb on - strand at 3957.363 kb on - strand at 3957.385 kb on - strand at 3957.434 kb on + strand at 3957.435 kb on - strand at 3957.435 kb on - strand at 3957.435 kb on - strand at 3957.436 kb on + strand at 3957.436 kb on + strand at 3957.437 kb on - strand at 3957.444 kb on + strand at 3957.445 kb on - strand at 3957.533 kb on + strand at 3957.534 kb on - strand at 3957.534 kb on - strand at 3957.598 kb on + strand, within Echvi_3352 at 3957.640 kb on + strand, within Echvi_3352 at 3957.640 kb on + strand, within Echvi_3352 at 3957.716 kb on - strand, within Echvi_3352 at 3957.743 kb on - strand, within Echvi_3352 at 3957.766 kb on - strand, within Echvi_3352 at 3957.767 kb on + strand, within Echvi_3352 at 3957.767 kb on + strand, within Echvi_3352 at 3957.767 kb on + strand, within Echvi_3352 at 3957.768 kb on - strand, within Echvi_3352 at 3957.768 kb on - strand, within Echvi_3352 at 3957.768 kb on - strand, within Echvi_3352 at 3957.773 kb on + strand, within Echvi_3352 at 3957.774 kb on - strand, within Echvi_3352 at 3957.825 kb on + strand, within Echvi_3352 at 3957.868 kb on + strand, within Echvi_3352 at 3957.884 kb on + strand, within Echvi_3352 at 3957.884 kb on + strand, within Echvi_3352 at 3957.884 kb on + strand, within Echvi_3352 at 3957.926 kb on + strand, within Echvi_3352 at 3957.927 kb on - strand, within Echvi_3352 at 3957.927 kb on - strand, within Echvi_3352 at 3957.937 kb on - strand, within Echvi_3352 at 3957.957 kb on + strand, within Echvi_3352 at 3957.957 kb on + strand, within Echvi_3352 at 3957.957 kb on + strand, within Echvi_3352 at 3957.991 kb on + strand, within Echvi_3352
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 3,954,448 - Echvi_3350 0.26 -0.6 3,954,448 - Echvi_3350 0.26 +1.3 3,954,472 - Echvi_3350 0.28 +0.8 3,954,472 - Echvi_3350 0.28 -1.8 3,954,472 - Echvi_3350 0.28 +0.5 3,954,531 - Echvi_3350 0.33 +0.1 3,954,630 + Echvi_3350 0.42 -1.9 3,954,666 + Echvi_3350 0.45 -0.3 3,954,667 - Echvi_3350 0.45 +0.6 3,954,768 - Echvi_3350 0.53 +0.6 3,954,912 + Echvi_3350 0.66 -0.9 3,954,912 + Echvi_3350 0.66 +1.0 3,954,912 + Echvi_3350 0.66 +0.8 3,954,912 + Echvi_3350 0.66 +2.6 3,954,913 - Echvi_3350 0.66 -0.6 3,954,954 + Echvi_3350 0.69 -0.1 3,955,121 - Echvi_3350 0.83 +0.5 3,955,308 + -1.1 3,955,309 - -0.5 3,955,312 + -0.1 3,955,312 + +0.3 3,955,312 + +0.1 3,955,313 - +2.5 3,955,313 - +1.0 3,955,319 - +2.7 3,955,324 + +1.1 3,955,324 + +0.7 3,955,325 - -0.7 3,955,399 - +1.3 3,955,458 + -0.8 3,955,458 + +3.2 3,955,459 - +1.5 3,955,467 + +1.0 3,955,467 + -1.5 3,955,468 - -2.1 3,955,496 - -1.5 3,955,509 - -1.2 3,955,516 + -0.3 3,955,516 + -2.2 3,955,548 + -1.4 3,955,549 - -2.1 3,955,556 + -2.1 3,955,556 + -1.9 3,955,581 - Echvi_3351 0.11 -2.8 3,955,581 - Echvi_3351 0.11 -1.6 3,955,843 - Echvi_3351 0.27 -0.8 3,955,895 - Echvi_3351 0.30 +0.2 3,956,010 - Echvi_3351 0.37 -1.7 3,956,023 - Echvi_3351 0.38 -0.8 3,956,023 - Echvi_3351 0.38 -0.4 3,956,023 - Echvi_3351 0.38 -1.5 3,956,117 - Echvi_3351 0.44 -2.1 3,956,117 - Echvi_3351 0.44 -0.0 3,956,122 + Echvi_3351 0.44 -3.9 3,956,311 + Echvi_3351 0.56 -0.8 3,956,317 + Echvi_3351 0.56 -0.6 3,956,318 - Echvi_3351 0.56 -0.1 3,956,318 - Echvi_3351 0.56 -0.5 3,956,325 + Echvi_3351 0.57 -0.4 3,956,339 - Echvi_3351 0.58 -1.3 3,956,716 - Echvi_3351 0.81 -2.6 3,956,745 + Echvi_3351 0.83 -1.4 3,956,745 + Echvi_3351 0.83 -0.6 3,956,746 - Echvi_3351 0.83 -2.0 3,956,781 - Echvi_3351 0.85 -3.5 3,956,828 - Echvi_3351 0.88 +0.4 3,956,849 + Echvi_3351 0.89 -3.0 3,956,849 + Echvi_3351 0.89 -1.1 3,956,849 + Echvi_3351 0.89 +1.2 3,956,849 + Echvi_3351 0.89 -1.4 3,956,849 + Echvi_3351 0.89 -0.6 3,956,850 - Echvi_3351 0.89 -1.1 3,956,850 - Echvi_3351 0.89 -2.4 3,956,850 - Echvi_3351 0.89 -1.7 3,956,850 - Echvi_3351 0.89 -1.4 3,956,851 + Echvi_3351 0.89 -1.1 3,956,864 - -1.4 3,956,934 + -0.9 3,956,934 + -1.3 3,956,934 + -0.9 3,956,935 - -1.5 3,956,957 + -0.9 3,956,958 - +0.7 3,956,964 - -0.4 3,957,008 - -2.2 3,957,008 - -1.1 3,957,008 - -2.9 3,957,008 - -2.5 3,957,119 - -1.0 3,957,119 - -0.8 3,957,147 - +0.5 3,957,150 + +0.2 3,957,150 + +0.5 3,957,150 + +0.8 3,957,151 - +1.2 3,957,225 + +1.0 3,957,225 + +0.0 3,957,226 - -1.7 3,957,280 + +0.0 3,957,297 + -1.0 3,957,297 + -0.6 3,957,297 + -0.0 3,957,297 + +0.1 3,957,298 - +1.0 3,957,315 - +1.3 3,957,323 + -0.0 3,957,323 + -0.5 3,957,324 - +0.7 3,957,324 - +1.2 3,957,349 + -1.4 3,957,350 - -0.1 3,957,350 - +1.3 3,957,350 - -0.0 3,957,363 - -0.4 3,957,385 - +0.1 3,957,434 + +0.8 3,957,435 - +1.5 3,957,435 - -1.2 3,957,435 - -0.2 3,957,436 + -0.5 3,957,436 + -2.0 3,957,437 - -0.6 3,957,444 + -0.8 3,957,445 - -1.4 3,957,533 + +0.3 3,957,534 - -1.4 3,957,534 - +1.5 3,957,598 + Echvi_3352 0.13 +0.6 3,957,640 + Echvi_3352 0.16 -0.8 3,957,640 + Echvi_3352 0.16 -0.7 3,957,716 - Echvi_3352 0.22 -1.1 3,957,743 - Echvi_3352 0.24 -1.7 3,957,766 - Echvi_3352 0.26 +3.0 3,957,767 + Echvi_3352 0.26 -0.2 3,957,767 + Echvi_3352 0.26 -0.9 3,957,767 + Echvi_3352 0.26 +0.3 3,957,768 - Echvi_3352 0.26 -0.5 3,957,768 - Echvi_3352 0.26 -1.3 3,957,768 - Echvi_3352 0.26 -1.9 3,957,773 + Echvi_3352 0.27 +1.0 3,957,774 - Echvi_3352 0.27 -0.6 3,957,825 + Echvi_3352 0.31 -0.6 3,957,868 + Echvi_3352 0.34 -1.9 3,957,884 + Echvi_3352 0.36 -0.7 3,957,884 + Echvi_3352 0.36 -0.4 3,957,884 + Echvi_3352 0.36 -1.6 3,957,926 + Echvi_3352 0.39 -0.6 3,957,927 - Echvi_3352 0.39 -1.6 3,957,927 - Echvi_3352 0.39 -2.0 3,957,937 - Echvi_3352 0.40 -1.1 3,957,957 + Echvi_3352 0.41 +0.5 3,957,957 + Echvi_3352 0.41 -0.7 3,957,957 + Echvi_3352 0.41 +1.1 3,957,991 + Echvi_3352 0.44 -1.7
Or see this region's nucleotide sequence