Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2835

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2834 and Echvi_2835 are separated by 11 nucleotidesEchvi_2835 and Echvi_2836 are separated by 260 nucleotides Echvi_2834: Echvi_2834 - Outer membrane protein, at 3,394,456 to 3,395,802 _2834 Echvi_2835: Echvi_2835 - RND family efflux transporter, MFP subunit, at 3,395,814 to 3,397,100 _2835 Echvi_2836: Echvi_2836 - hypothetical protein, at 3,397,361 to 3,398,230 _2836 Position (kb) 3395 3396 3397 3398Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3394.866 kb on + strand, within Echvi_2834at 3394.866 kb on + strand, within Echvi_2834at 3394.866 kb on + strand, within Echvi_2834at 3394.867 kb on - strand, within Echvi_2834at 3394.870 kb on - strand, within Echvi_2834at 3394.901 kb on + strand, within Echvi_2834at 3394.922 kb on + strand, within Echvi_2834at 3395.117 kb on + strand, within Echvi_2834at 3395.117 kb on + strand, within Echvi_2834at 3395.170 kb on + strand, within Echvi_2834at 3395.171 kb on - strand, within Echvi_2834at 3395.171 kb on - strand, within Echvi_2834at 3395.171 kb on - strand, within Echvi_2834at 3395.172 kb on + strand, within Echvi_2834at 3395.172 kb on + strand, within Echvi_2834at 3395.270 kb on - strand, within Echvi_2834at 3395.270 kb on - strand, within Echvi_2834at 3395.270 kb on - strand, within Echvi_2834at 3395.277 kb on - strand, within Echvi_2834at 3395.316 kb on - strand, within Echvi_2834at 3395.335 kb on - strand, within Echvi_2834at 3395.339 kb on - strand, within Echvi_2834at 3395.396 kb on + strand, within Echvi_2834at 3395.396 kb on + strand, within Echvi_2834at 3395.397 kb on - strand, within Echvi_2834at 3395.404 kb on - strand, within Echvi_2834at 3395.426 kb on + strand, within Echvi_2834at 3395.433 kb on + strand, within Echvi_2834at 3395.433 kb on + strand, within Echvi_2834at 3395.434 kb on - strand, within Echvi_2834at 3395.434 kb on - strand, within Echvi_2834at 3395.460 kb on + strand, within Echvi_2834at 3395.497 kb on + strand, within Echvi_2834at 3395.497 kb on + strand, within Echvi_2834at 3395.498 kb on - strand, within Echvi_2834at 3395.561 kb on - strand, within Echvi_2834at 3395.562 kb on + strand, within Echvi_2834at 3395.563 kb on - strand, within Echvi_2834at 3395.661 kb on - strand, within Echvi_2834at 3395.661 kb on - strand, within Echvi_2834at 3395.710 kb on - strandat 3395.740 kb on + strandat 3395.741 kb on - strandat 3395.798 kb on + strandat 3395.799 kb on - strandat 3395.820 kb on - strandat 3396.091 kb on + strand, within Echvi_2835at 3396.092 kb on - strand, within Echvi_2835at 3396.092 kb on - strand, within Echvi_2835at 3396.212 kb on - strand, within Echvi_2835at 3396.230 kb on - strand, within Echvi_2835at 3396.235 kb on - strand, within Echvi_2835at 3396.235 kb on - strand, within Echvi_2835at 3396.246 kb on - strand, within Echvi_2835at 3396.255 kb on + strand, within Echvi_2835at 3396.255 kb on + strand, within Echvi_2835at 3396.437 kb on + strand, within Echvi_2835at 3396.448 kb on + strand, within Echvi_2835at 3396.449 kb on - strand, within Echvi_2835at 3396.624 kb on + strand, within Echvi_2835at 3396.647 kb on + strand, within Echvi_2835at 3396.728 kb on - strand, within Echvi_2835at 3396.778 kb on - strand, within Echvi_2835at 3396.913 kb on + strand, within Echvi_2835at 3396.913 kb on + strand, within Echvi_2835at 3397.003 kb on + strandat 3397.004 kb on - strandat 3397.135 kb on - strandat 3397.193 kb on + strandat 3397.194 kb on - strandat 3397.218 kb on + strandat 3397.234 kb on + strandat 3397.234 kb on + strandat 3397.234 kb on + strandat 3397.235 kb on - strandat 3397.235 kb on - strandat 3397.283 kb on + strandat 3397.283 kb on + strandat 3397.300 kb on + strandat 3397.301 kb on - strandat 3397.331 kb on + strandat 3397.357 kb on + strandat 3397.358 kb on - strandat 3397.363 kb on - strandat 3397.372 kb on + strandat 3397.373 kb on - strandat 3397.373 kb on - strandat 3397.373 kb on - strandat 3397.384 kb on + strandat 3397.384 kb on + strandat 3397.389 kb on - strandat 3397.418 kb on + strandat 3397.517 kb on + strand, within Echvi_2836at 3397.539 kb on + strand, within Echvi_2836at 3397.540 kb on - strand, within Echvi_2836at 3397.550 kb on + strand, within Echvi_2836at 3397.551 kb on - strand, within Echvi_2836at 3397.599 kb on + strand, within Echvi_2836at 3397.600 kb on - strand, within Echvi_2836at 3397.724 kb on + strand, within Echvi_2836at 3397.725 kb on - strand, within Echvi_2836at 3397.790 kb on + strand, within Echvi_2836at 3397.790 kb on + strand, within Echvi_2836at 3397.866 kb on + strand, within Echvi_2836at 3397.866 kb on + strand, within Echvi_2836at 3397.933 kb on + strand, within Echvi_2836at 3397.951 kb on + strand, within Echvi_2836at 3397.976 kb on - strand, within Echvi_2836at 3398.029 kb on + strand, within Echvi_2836at 3398.030 kb on - strand, within Echvi_2836

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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3,394,866 + Echvi_2834 0.30 +0.6
3,394,866 + Echvi_2834 0.30 -0.1
3,394,866 + Echvi_2834 0.30 -1.7
3,394,867 - Echvi_2834 0.31 +0.9
3,394,870 - Echvi_2834 0.31 -0.1
3,394,901 + Echvi_2834 0.33 -1.4
3,394,922 + Echvi_2834 0.35 -1.0
3,395,117 + Echvi_2834 0.49 -0.3
3,395,117 + Echvi_2834 0.49 +0.2
3,395,170 + Echvi_2834 0.53 +0.3
3,395,171 - Echvi_2834 0.53 -0.1
3,395,171 - Echvi_2834 0.53 -0.9
3,395,171 - Echvi_2834 0.53 +1.1
3,395,172 + Echvi_2834 0.53 +0.6
3,395,172 + Echvi_2834 0.53 +0.4
3,395,270 - Echvi_2834 0.60 -0.0
3,395,270 - Echvi_2834 0.60 +1.0
3,395,270 - Echvi_2834 0.60 +1.1
3,395,277 - Echvi_2834 0.61 -0.5
3,395,316 - Echvi_2834 0.64 +1.0
3,395,335 - Echvi_2834 0.65 +0.4
3,395,339 - Echvi_2834 0.66 -2.3
3,395,396 + Echvi_2834 0.70 -0.1
3,395,396 + Echvi_2834 0.70 +0.1
3,395,397 - Echvi_2834 0.70 +0.5
3,395,404 - Echvi_2834 0.70 +2.1
3,395,426 + Echvi_2834 0.72 +1.4
3,395,433 + Echvi_2834 0.73 +0.9
3,395,433 + Echvi_2834 0.73 +0.8
3,395,434 - Echvi_2834 0.73 -0.5
3,395,434 - Echvi_2834 0.73 -0.4
3,395,460 + Echvi_2834 0.75 +1.1
3,395,497 + Echvi_2834 0.77 -1.6
3,395,497 + Echvi_2834 0.77 -1.8
3,395,498 - Echvi_2834 0.77 -2.3
3,395,561 - Echvi_2834 0.82 +0.4
3,395,562 + Echvi_2834 0.82 -1.0
3,395,563 - Echvi_2834 0.82 -0.1
3,395,661 - Echvi_2834 0.89 -0.7
3,395,661 - Echvi_2834 0.89 -0.9
3,395,710 - +1.8
3,395,740 + +0.4
3,395,741 - +0.1
3,395,798 + +0.6
3,395,799 - -0.9
3,395,820 - +1.4
3,396,091 + Echvi_2835 0.22 +0.3
3,396,092 - Echvi_2835 0.22 +1.4
3,396,092 - Echvi_2835 0.22 +0.8
3,396,212 - Echvi_2835 0.31 +1.0
3,396,230 - Echvi_2835 0.32 -1.3
3,396,235 - Echvi_2835 0.33 -0.7
3,396,235 - Echvi_2835 0.33 -0.4
3,396,246 - Echvi_2835 0.34 -0.2
3,396,255 + Echvi_2835 0.34 -0.3
3,396,255 + Echvi_2835 0.34 -1.3
3,396,437 + Echvi_2835 0.48 +0.7
3,396,448 + Echvi_2835 0.49 +0.0
3,396,449 - Echvi_2835 0.49 -1.6
3,396,624 + Echvi_2835 0.63 -0.3
3,396,647 + Echvi_2835 0.65 -1.8
3,396,728 - Echvi_2835 0.71 -0.0
3,396,778 - Echvi_2835 0.75 -0.7
3,396,913 + Echvi_2835 0.85 -0.1
3,396,913 + Echvi_2835 0.85 -0.3
3,397,003 + -0.6
3,397,004 - -1.2
3,397,135 - -0.1
3,397,193 + -1.3
3,397,194 - +0.4
3,397,218 + +0.1
3,397,234 + -0.1
3,397,234 + -0.7
3,397,234 + -0.6
3,397,235 - +1.3
3,397,235 - -0.7
3,397,283 + +0.4
3,397,283 + +0.2
3,397,300 + +0.2
3,397,301 - +0.6
3,397,331 + +0.5
3,397,357 + -0.7
3,397,358 - -0.3
3,397,363 - -1.2
3,397,372 + +2.1
3,397,373 - +0.7
3,397,373 - +1.3
3,397,373 - +0.6
3,397,384 + +3.2
3,397,384 + -1.0
3,397,389 - +0.3
3,397,418 + +0.1
3,397,517 + Echvi_2836 0.18 +0.9
3,397,539 + Echvi_2836 0.20 +0.0
3,397,540 - Echvi_2836 0.21 -0.5
3,397,550 + Echvi_2836 0.22 +1.1
3,397,551 - Echvi_2836 0.22 +0.9
3,397,599 + Echvi_2836 0.27 +1.3
3,397,600 - Echvi_2836 0.27 +1.3
3,397,724 + Echvi_2836 0.42 +1.8
3,397,725 - Echvi_2836 0.42 -0.2
3,397,790 + Echvi_2836 0.49 -0.1
3,397,790 + Echvi_2836 0.49 +0.4
3,397,866 + Echvi_2836 0.58 -0.0
3,397,866 + Echvi_2836 0.58 +0.7
3,397,933 + Echvi_2836 0.66 +0.3
3,397,951 + Echvi_2836 0.68 +0.9
3,397,976 - Echvi_2836 0.71 +0.5
3,398,029 + Echvi_2836 0.77 +1.3
3,398,030 - Echvi_2836 0.77 -0.2

Or see this region's nucleotide sequence