Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1796

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1795 and Echvi_1796 are separated by 549 nucleotidesEchvi_1796 and Echvi_1797 overlap by 17 nucleotides Echvi_1795: Echvi_1795 - hypothetical protein, at 2,111,107 to 2,111,424 _1795 Echvi_1796: Echvi_1796 - ATPase components of ABC transporters with duplicated ATPase domains, at 2,111,974 to 2,113,884 _1796 Echvi_1797: Echvi_1797 - Predicted flavoprotein involved in K+ transport, at 2,113,868 to 2,114,911 _1797 Position (kb) 2111 2112 2113 2114Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2111.068 kb on - strandat 2111.075 kb on - strandat 2111.075 kb on - strandat 2111.075 kb on - strandat 2111.075 kb on - strandat 2111.075 kb on - strandat 2111.075 kb on - strandat 2111.078 kb on - strandat 2111.078 kb on - strandat 2111.079 kb on + strandat 2111.116 kb on - strandat 2111.181 kb on + strand, within Echvi_1795at 2111.181 kb on + strand, within Echvi_1795at 2111.183 kb on + strand, within Echvi_1795at 2111.187 kb on + strand, within Echvi_1795at 2111.188 kb on - strand, within Echvi_1795at 2111.188 kb on - strand, within Echvi_1795at 2111.188 kb on - strand, within Echvi_1795at 2111.248 kb on - strand, within Echvi_1795at 2111.256 kb on + strand, within Echvi_1795at 2111.257 kb on - strand, within Echvi_1795at 2111.281 kb on + strand, within Echvi_1795at 2111.282 kb on - strand, within Echvi_1795at 2111.388 kb on - strand, within Echvi_1795at 2111.416 kb on - strandat 2111.418 kb on + strandat 2111.418 kb on + strandat 2111.423 kb on - strandat 2111.471 kb on + strandat 2111.483 kb on + strandat 2111.510 kb on - strandat 2111.511 kb on + strandat 2111.512 kb on - strandat 2111.568 kb on - strandat 2111.580 kb on - strandat 2111.582 kb on - strandat 2111.582 kb on - strandat 2111.582 kb on - strandat 2111.582 kb on - strandat 2111.585 kb on + strandat 2111.592 kb on + strandat 2111.592 kb on + strandat 2111.592 kb on + strandat 2111.593 kb on - strandat 2111.593 kb on - strandat 2111.594 kb on + strandat 2111.594 kb on + strandat 2111.594 kb on + strandat 2111.594 kb on + strandat 2111.595 kb on - strandat 2111.595 kb on - strandat 2111.595 kb on - strandat 2111.595 kb on - strandat 2111.595 kb on - strandat 2111.642 kb on - strandat 2111.642 kb on - strandat 2111.645 kb on + strandat 2111.646 kb on - strandat 2111.654 kb on + strandat 2111.654 kb on + strandat 2111.671 kb on - strandat 2111.706 kb on - strandat 2111.716 kb on + strandat 2111.717 kb on - strandat 2111.723 kb on + strandat 2111.750 kb on - strandat 2111.769 kb on + strandat 2111.769 kb on + strandat 2111.769 kb on + strandat 2111.793 kb on - strandat 2111.835 kb on + strandat 2111.851 kb on - strandat 2111.874 kb on + strandat 2111.909 kb on + strandat 2111.922 kb on + strandat 2111.938 kb on + strandat 2111.987 kb on - strandat 2112.089 kb on + strandat 2112.090 kb on - strandat 2112.090 kb on - strandat 2112.164 kb on + strandat 2112.187 kb on + strand, within Echvi_1796at 2112.187 kb on + strand, within Echvi_1796at 2112.188 kb on - strand, within Echvi_1796at 2112.221 kb on + strand, within Echvi_1796at 2112.221 kb on + strand, within Echvi_1796at 2112.221 kb on + strand, within Echvi_1796at 2112.221 kb on + strand, within Echvi_1796at 2112.221 kb on + strand, within Echvi_1796at 2112.222 kb on - strand, within Echvi_1796at 2112.222 kb on - strand, within Echvi_1796at 2112.225 kb on + strand, within Echvi_1796at 2112.225 kb on + strandat 2112.226 kb on - strand, within Echvi_1796at 2112.239 kb on + strand, within Echvi_1796at 2112.284 kb on - strand, within Echvi_1796at 2112.343 kb on - strand, within Echvi_1796at 2112.343 kb on - strand, within Echvi_1796at 2112.344 kb on + strand, within Echvi_1796at 2112.345 kb on - strand, within Echvi_1796at 2112.414 kb on - strand, within Echvi_1796at 2112.414 kb on - strand, within Echvi_1796at 2112.494 kb on + strand, within Echvi_1796at 2112.509 kb on + strand, within Echvi_1796at 2112.579 kb on + strand, within Echvi_1796at 2112.601 kb on - strand, within Echvi_1796at 2112.666 kb on + strand, within Echvi_1796at 2112.674 kb on - strand, within Echvi_1796at 2112.679 kb on + strand, within Echvi_1796at 2112.679 kb on + strand, within Echvi_1796at 2112.680 kb on - strand, within Echvi_1796at 2112.680 kb on - strand, within Echvi_1796at 2112.680 kb on - strand, within Echvi_1796at 2112.691 kb on + strand, within Echvi_1796at 2112.692 kb on - strand, within Echvi_1796at 2112.692 kb on - strand, within Echvi_1796at 2112.692 kb on - strand, within Echvi_1796at 2112.694 kb on - strand, within Echvi_1796at 2112.697 kb on + strand, within Echvi_1796at 2112.697 kb on + strand, within Echvi_1796at 2112.697 kb on + strand, within Echvi_1796at 2112.698 kb on - strand, within Echvi_1796at 2112.765 kb on - strand, within Echvi_1796at 2112.932 kb on + strand, within Echvi_1796at 2112.933 kb on - strand, within Echvi_1796at 2112.933 kb on - strand, within Echvi_1796at 2112.994 kb on - strand, within Echvi_1796at 2112.994 kb on - strand, within Echvi_1796at 2113.012 kb on - strand, within Echvi_1796at 2113.032 kb on + strand, within Echvi_1796at 2113.068 kb on + strand, within Echvi_1796at 2113.069 kb on - strand, within Echvi_1796at 2113.101 kb on + strand, within Echvi_1796at 2113.101 kb on + strand, within Echvi_1796at 2113.102 kb on - strand, within Echvi_1796at 2113.132 kb on + strand, within Echvi_1796at 2113.132 kb on + strand, within Echvi_1796at 2113.132 kb on + strand, within Echvi_1796at 2113.133 kb on - strand, within Echvi_1796at 2113.135 kb on - strand, within Echvi_1796at 2113.135 kb on - strand, within Echvi_1796at 2113.222 kb on - strand, within Echvi_1796at 2113.230 kb on + strand, within Echvi_1796at 2113.282 kb on - strand, within Echvi_1796at 2113.322 kb on + strand, within Echvi_1796at 2113.331 kb on + strand, within Echvi_1796at 2113.331 kb on + strand, within Echvi_1796at 2113.345 kb on - strand, within Echvi_1796at 2113.399 kb on - strand, within Echvi_1796at 2113.449 kb on + strand, within Echvi_1796at 2113.474 kb on - strand, within Echvi_1796at 2113.494 kb on + strand, within Echvi_1796at 2113.495 kb on - strand, within Echvi_1796at 2113.543 kb on + strand, within Echvi_1796at 2113.543 kb on + strand, within Echvi_1796at 2113.544 kb on - strand, within Echvi_1796at 2113.597 kb on - strand, within Echvi_1796at 2113.662 kb on + strand, within Echvi_1796at 2113.764 kb on + strandat 2113.784 kb on + strandat 2113.804 kb on - strandat 2113.804 kb on - strandat 2113.805 kb on + strandat 2113.872 kb on + strandat 2113.872 kb on + strandat 2113.873 kb on - strandat 2113.873 kb on - strandat 2113.876 kb on - strandat 2113.883 kb on - strandat 2113.896 kb on + strandat 2113.901 kb on + strandat 2113.905 kb on + strandat 2113.905 kb on + strandat 2113.906 kb on - strandat 2113.946 kb on + strandat 2114.033 kb on - strand, within Echvi_1797at 2114.054 kb on + strand, within Echvi_1797at 2114.054 kb on + strand, within Echvi_1797at 2114.055 kb on - strand, within Echvi_1797at 2114.064 kb on + strand, within Echvi_1797at 2114.065 kb on - strand, within Echvi_1797at 2114.085 kb on + strand, within Echvi_1797at 2114.097 kb on + strand, within Echvi_1797at 2114.104 kb on + strand, within Echvi_1797at 2114.310 kb on + strand, within Echvi_1797at 2114.311 kb on - strand, within Echvi_1797at 2114.321 kb on + strand, within Echvi_1797at 2114.321 kb on + strand, within Echvi_1797at 2114.321 kb on + strand, within Echvi_1797at 2114.322 kb on - strand, within Echvi_1797at 2114.322 kb on - strand, within Echvi_1797at 2114.382 kb on + strand, within Echvi_1797at 2114.382 kb on + strand, within Echvi_1797at 2114.383 kb on - strand, within Echvi_1797at 2114.412 kb on + strand, within Echvi_1797at 2114.412 kb on + strand, within Echvi_1797at 2114.413 kb on - strand, within Echvi_1797at 2114.453 kb on - strand, within Echvi_1797at 2114.455 kb on - strand, within Echvi_1797at 2114.530 kb on + strand, within Echvi_1797at 2114.530 kb on + strand, within Echvi_1797at 2114.530 kb on + strand, within Echvi_1797at 2114.530 kb on + strand, within Echvi_1797at 2114.531 kb on - strand, within Echvi_1797at 2114.531 kb on - strand, within Echvi_1797at 2114.554 kb on + strand, within Echvi_1797at 2114.573 kb on - strand, within Echvi_1797at 2114.573 kb on - strand, within Echvi_1797at 2114.576 kb on + strand, within Echvi_1797at 2114.635 kb on - strand, within Echvi_1797at 2114.647 kb on + strand, within Echvi_1797at 2114.647 kb on + strand, within Echvi_1797at 2114.684 kb on + strand, within Echvi_1797at 2114.684 kb on + strand, within Echvi_1797at 2114.685 kb on - strand, within Echvi_1797at 2114.714 kb on - strand, within Echvi_1797at 2114.723 kb on + strand, within Echvi_1797at 2114.734 kb on - strand, within Echvi_1797at 2114.737 kb on + strand, within Echvi_1797at 2114.737 kb on + strand, within Echvi_1797at 2114.855 kb on + strandat 2114.856 kb on - strandat 2114.884 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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2,111,068 - +0.5
2,111,075 - +0.4
2,111,075 - -0.0
2,111,075 - -2.8
2,111,075 - -0.1
2,111,075 - -1.0
2,111,075 - +0.3
2,111,078 - +1.0
2,111,078 - -0.7
2,111,079 + -0.1
2,111,116 - +0.2
2,111,181 + Echvi_1795 0.23 +0.5
2,111,181 + Echvi_1795 0.23 -1.2
2,111,183 + Echvi_1795 0.24 -0.1
2,111,187 + Echvi_1795 0.25 -0.0
2,111,188 - Echvi_1795 0.25 -2.4
2,111,188 - Echvi_1795 0.25 -1.2
2,111,188 - Echvi_1795 0.25 -1.2
2,111,248 - Echvi_1795 0.44 -1.7
2,111,256 + Echvi_1795 0.47 +0.5
2,111,257 - Echvi_1795 0.47 -1.2
2,111,281 + Echvi_1795 0.55 +0.2
2,111,282 - Echvi_1795 0.55 +1.4
2,111,388 - Echvi_1795 0.88 +0.1
2,111,416 - -1.9
2,111,418 + +0.1
2,111,418 + -0.6
2,111,423 - +0.8
2,111,471 + +0.2
2,111,483 + -0.0
2,111,510 - +0.2
2,111,511 + +0.3
2,111,512 - +0.4
2,111,568 - +0.5
2,111,580 - -0.4
2,111,582 - +0.1
2,111,582 - +1.1
2,111,582 - -1.0
2,111,582 - -0.2
2,111,585 + -0.6
2,111,592 + +0.1
2,111,592 + -0.2
2,111,592 + -1.5
2,111,593 - +0.2
2,111,593 - -0.3
2,111,594 + +0.6
2,111,594 + -0.3
2,111,594 + +0.4
2,111,594 + -0.1
2,111,595 - +0.0
2,111,595 - +0.3
2,111,595 - +0.6
2,111,595 - +0.8
2,111,595 - +0.8
2,111,642 - -0.6
2,111,642 - +1.2
2,111,645 + -1.1
2,111,646 - -0.4
2,111,654 + -1.2
2,111,654 + +0.0
2,111,671 - -1.4
2,111,706 - +0.1
2,111,716 + -0.3
2,111,717 - +1.4
2,111,723 + -1.7
2,111,750 - +0.0
2,111,769 + -1.2
2,111,769 + -1.3
2,111,769 + +0.5
2,111,793 - -0.4
2,111,835 + +0.0
2,111,851 - +1.0
2,111,874 + -0.8
2,111,909 + -2.2
2,111,922 + -1.1
2,111,938 + +0.9
2,111,987 - +1.9
2,112,089 + +1.2
2,112,090 - +3.3
2,112,090 - +2.1
2,112,164 + +3.1
2,112,187 + Echvi_1796 0.11 +3.3
2,112,187 + Echvi_1796 0.11 +3.6
2,112,188 - Echvi_1796 0.11 +2.9
2,112,221 + Echvi_1796 0.13 +1.8
2,112,221 + Echvi_1796 0.13 +2.3
2,112,221 + Echvi_1796 0.13 +3.6
2,112,221 + Echvi_1796 0.13 +1.4
2,112,221 + Echvi_1796 0.13 +2.4
2,112,222 - Echvi_1796 0.13 +2.9
2,112,222 - Echvi_1796 0.13 +3.0
2,112,225 + Echvi_1796 0.13 +2.1
2,112,225 + +1.5
2,112,226 - Echvi_1796 0.13 +1.6
2,112,239 + Echvi_1796 0.14 +2.2
2,112,284 - Echvi_1796 0.16 +2.6
2,112,343 - Echvi_1796 0.19 +2.3
2,112,343 - Echvi_1796 0.19 +3.6
2,112,344 + Echvi_1796 0.19 +2.5
2,112,345 - Echvi_1796 0.19 +2.3
2,112,414 - Echvi_1796 0.23 +2.6
2,112,414 - Echvi_1796 0.23 +2.3
2,112,494 + Echvi_1796 0.27 +2.3
2,112,509 + Echvi_1796 0.28 +3.0
2,112,579 + Echvi_1796 0.32 +2.2
2,112,601 - Echvi_1796 0.33 +2.6
2,112,666 + Echvi_1796 0.36 +0.9
2,112,674 - Echvi_1796 0.37 +2.1
2,112,679 + Echvi_1796 0.37 +3.3
2,112,679 + Echvi_1796 0.37 +3.2
2,112,680 - Echvi_1796 0.37 +2.6
2,112,680 - Echvi_1796 0.37 +2.5
2,112,680 - Echvi_1796 0.37 +2.9
2,112,691 + Echvi_1796 0.38 +1.8
2,112,692 - Echvi_1796 0.38 +2.6
2,112,692 - Echvi_1796 0.38 +2.1
2,112,692 - Echvi_1796 0.38 +2.4
2,112,694 - Echvi_1796 0.38 +4.2
2,112,697 + Echvi_1796 0.38 +0.7
2,112,697 + Echvi_1796 0.38 +4.0
2,112,697 + Echvi_1796 0.38 +1.2
2,112,698 - Echvi_1796 0.38 +3.0
2,112,765 - Echvi_1796 0.41 +2.9
2,112,932 + Echvi_1796 0.50 +2.7
2,112,933 - Echvi_1796 0.50 +1.1
2,112,933 - Echvi_1796 0.50 +2.5
2,112,994 - Echvi_1796 0.53 +2.2
2,112,994 - Echvi_1796 0.53 +2.7
2,113,012 - Echvi_1796 0.54 +2.7
2,113,032 + Echvi_1796 0.55 +2.0
2,113,068 + Echvi_1796 0.57 +2.3
2,113,069 - Echvi_1796 0.57 +4.1
2,113,101 + Echvi_1796 0.59 +2.9
2,113,101 + Echvi_1796 0.59 +2.4
2,113,102 - Echvi_1796 0.59 +1.8
2,113,132 + Echvi_1796 0.61 +1.5
2,113,132 + Echvi_1796 0.61 +1.5
2,113,132 + Echvi_1796 0.61 +2.0
2,113,133 - Echvi_1796 0.61 -0.8
2,113,135 - Echvi_1796 0.61 +2.2
2,113,135 - Echvi_1796 0.61 +2.9
2,113,222 - Echvi_1796 0.65 +2.3
2,113,230 + Echvi_1796 0.66 +2.6
2,113,282 - Echvi_1796 0.68 +1.1
2,113,322 + Echvi_1796 0.71 +1.7
2,113,331 + Echvi_1796 0.71 +3.1
2,113,331 + Echvi_1796 0.71 +2.3
2,113,345 - Echvi_1796 0.72 +1.1
2,113,399 - Echvi_1796 0.75 +2.1
2,113,449 + Echvi_1796 0.77 +2.1
2,113,474 - Echvi_1796 0.78 +2.6
2,113,494 + Echvi_1796 0.80 +1.7
2,113,495 - Echvi_1796 0.80 +1.8
2,113,543 + Echvi_1796 0.82 -0.2
2,113,543 + Echvi_1796 0.82 -0.7
2,113,544 - Echvi_1796 0.82 +0.5
2,113,597 - Echvi_1796 0.85 +2.1
2,113,662 + Echvi_1796 0.88 +2.5
2,113,764 + +1.7
2,113,784 + +3.3
2,113,804 - +2.9
2,113,804 - +2.2
2,113,805 + +2.5
2,113,872 + +0.9
2,113,872 + +1.2
2,113,873 - +1.7
2,113,873 - +3.0
2,113,876 - +2.1
2,113,883 - -0.9
2,113,896 + -0.7
2,113,901 + -1.4
2,113,905 + +0.9
2,113,905 + -1.1
2,113,906 - +1.7
2,113,946 + +0.2
2,114,033 - Echvi_1797 0.16 +0.5
2,114,054 + Echvi_1797 0.18 -1.8
2,114,054 + Echvi_1797 0.18 +0.5
2,114,055 - Echvi_1797 0.18 -1.5
2,114,064 + Echvi_1797 0.19 +1.0
2,114,065 - Echvi_1797 0.19 +1.0
2,114,085 + Echvi_1797 0.21 +2.8
2,114,097 + Echvi_1797 0.22 +0.0
2,114,104 + Echvi_1797 0.23 +1.3
2,114,310 + Echvi_1797 0.42 +0.6
2,114,311 - Echvi_1797 0.42 -3.0
2,114,321 + Echvi_1797 0.43 -2.4
2,114,321 + Echvi_1797 0.43 -0.4
2,114,321 + Echvi_1797 0.43 +0.9
2,114,322 - Echvi_1797 0.43 -0.1
2,114,322 - Echvi_1797 0.43 +0.4
2,114,382 + Echvi_1797 0.49 -0.2
2,114,382 + Echvi_1797 0.49 -0.1
2,114,383 - Echvi_1797 0.49 -0.4
2,114,412 + Echvi_1797 0.52 -0.7
2,114,412 + Echvi_1797 0.52 -0.6
2,114,413 - Echvi_1797 0.52 +2.4
2,114,453 - Echvi_1797 0.56 -1.3
2,114,455 - Echvi_1797 0.56 +0.5
2,114,530 + Echvi_1797 0.63 +0.7
2,114,530 + Echvi_1797 0.63 +0.4
2,114,530 + Echvi_1797 0.63 -1.2
2,114,530 + Echvi_1797 0.63 -0.4
2,114,531 - Echvi_1797 0.64 +0.4
2,114,531 - Echvi_1797 0.64 +0.7
2,114,554 + Echvi_1797 0.66 -0.8
2,114,573 - Echvi_1797 0.68 +0.3
2,114,573 - Echvi_1797 0.68 +0.7
2,114,576 + Echvi_1797 0.68 +0.1
2,114,635 - Echvi_1797 0.73 +0.0
2,114,647 + Echvi_1797 0.75 +0.3
2,114,647 + Echvi_1797 0.75 +0.7
2,114,684 + Echvi_1797 0.78 -0.5
2,114,684 + Echvi_1797 0.78 -0.3
2,114,685 - Echvi_1797 0.78 +0.1
2,114,714 - Echvi_1797 0.81 +0.0
2,114,723 + Echvi_1797 0.82 -0.7
2,114,734 - Echvi_1797 0.83 +0.0
2,114,737 + Echvi_1797 0.83 -0.2
2,114,737 + Echvi_1797 0.83 -0.3
2,114,855 + -0.1
2,114,856 - +1.9
2,114,884 - -0.1

Or see this region's nucleotide sequence