Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1158

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1156 and Echvi_1157 are separated by 363 nucleotidesEchvi_1157 and Echvi_1158 are separated by 89 nucleotidesEchvi_1158 and Echvi_1159 are separated by 25 nucleotidesEchvi_1159 and Echvi_1160 are separated by 103 nucleotides Echvi_1156: Echvi_1156 - recF protein, at 1,323,489 to 1,324,595 _1156 Echvi_1157: Echvi_1157 - hypothetical protein, at 1,324,959 to 1,325,318 _1157 Echvi_1158: Echvi_1158 - nicotinate-nucleotide pyrophosphorylase, at 1,325,408 to 1,326,265 _1158 Echvi_1159: Echvi_1159 - Response regulator of the LytR/AlgR family, at 1,326,291 to 1,327,061 _1159 Echvi_1160: Echvi_1160 - Alpha-L-fucosidase, at 1,327,165 to 1,329,219 _1160 Position (kb) 1325 1326 1327Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1324.436 kb on + strand, within Echvi_1156at 1324.596 kb on - strandat 1324.607 kb on - strandat 1324.613 kb on + strandat 1324.614 kb on - strandat 1324.619 kb on - strandat 1324.633 kb on - strandat 1324.633 kb on - strandat 1324.633 kb on - strandat 1324.650 kb on - strandat 1324.657 kb on + strandat 1324.658 kb on - strandat 1324.662 kb on - strandat 1324.676 kb on + strandat 1324.690 kb on + strandat 1324.691 kb on - strandat 1324.691 kb on - strandat 1324.691 kb on - strandat 1324.701 kb on + strandat 1324.787 kb on - strandat 1324.810 kb on + strandat 1324.854 kb on + strandat 1324.912 kb on + strandat 1324.912 kb on + strandat 1324.912 kb on + strandat 1324.924 kb on + strandat 1324.925 kb on - strandat 1324.925 kb on - strandat 1324.925 kb on - strandat 1324.925 kb on - strandat 1324.945 kb on + strandat 1324.945 kb on + strandat 1324.945 kb on + strandat 1324.952 kb on - strandat 1325.018 kb on - strand, within Echvi_1157at 1325.021 kb on + strand, within Echvi_1157at 1325.021 kb on + strand, within Echvi_1157at 1325.022 kb on - strand, within Echvi_1157at 1325.022 kb on - strand, within Echvi_1157at 1325.022 kb on - strand, within Echvi_1157at 1325.024 kb on - strand, within Echvi_1157at 1325.077 kb on + strand, within Echvi_1157at 1325.077 kb on + strand, within Echvi_1157at 1325.083 kb on + strand, within Echvi_1157at 1325.104 kb on - strand, within Echvi_1157at 1325.187 kb on - strand, within Echvi_1157at 1325.203 kb on + strand, within Echvi_1157at 1325.204 kb on - strand, within Echvi_1157at 1325.223 kb on + strand, within Echvi_1157at 1325.237 kb on + strand, within Echvi_1157at 1325.402 kb on + strandat 1325.421 kb on - strandat 1325.424 kb on + strandat 1325.449 kb on + strandat 1325.539 kb on - strand, within Echvi_1158at 1325.539 kb on - strand, within Echvi_1158at 1325.600 kb on + strand, within Echvi_1158at 1325.601 kb on - strand, within Echvi_1158at 1325.649 kb on + strand, within Echvi_1158at 1325.650 kb on - strand, within Echvi_1158at 1325.695 kb on + strand, within Echvi_1158at 1325.746 kb on + strand, within Echvi_1158at 1325.746 kb on + strand, within Echvi_1158at 1325.747 kb on - strand, within Echvi_1158at 1325.764 kb on + strand, within Echvi_1158at 1325.765 kb on - strand, within Echvi_1158at 1325.765 kb on - strand, within Echvi_1158at 1325.765 kb on - strand, within Echvi_1158at 1325.765 kb on - strand, within Echvi_1158at 1325.771 kb on - strand, within Echvi_1158at 1325.895 kb on - strand, within Echvi_1158at 1325.904 kb on + strand, within Echvi_1158at 1325.904 kb on + strand, within Echvi_1158at 1325.953 kb on + strand, within Echvi_1158at 1325.953 kb on + strand, within Echvi_1158at 1326.070 kb on + strand, within Echvi_1158at 1326.071 kb on - strand, within Echvi_1158at 1326.071 kb on - strand, within Echvi_1158at 1326.082 kb on + strand, within Echvi_1158at 1326.082 kb on + strand, within Echvi_1158at 1326.090 kb on - strand, within Echvi_1158at 1326.128 kb on - strand, within Echvi_1158at 1326.128 kb on - strand, within Echvi_1158at 1326.202 kb on + strandat 1326.202 kb on + strandat 1326.203 kb on - strandat 1326.281 kb on + strandat 1326.282 kb on - strandat 1326.432 kb on + strand, within Echvi_1159at 1326.433 kb on - strand, within Echvi_1159at 1326.475 kb on - strand, within Echvi_1159at 1326.475 kb on - strand, within Echvi_1159at 1326.491 kb on - strand, within Echvi_1159at 1326.509 kb on + strand, within Echvi_1159at 1326.524 kb on + strand, within Echvi_1159at 1326.535 kb on + strand, within Echvi_1159at 1326.536 kb on - strand, within Echvi_1159at 1326.539 kb on + strand, within Echvi_1159at 1326.540 kb on - strand, within Echvi_1159at 1326.540 kb on - strand, within Echvi_1159at 1326.597 kb on - strand, within Echvi_1159at 1326.597 kb on - strand, within Echvi_1159at 1326.652 kb on + strand, within Echvi_1159at 1326.653 kb on - strand, within Echvi_1159at 1326.653 kb on - strand, within Echvi_1159at 1326.653 kb on - strand, within Echvi_1159at 1326.653 kb on - strand, within Echvi_1159at 1326.657 kb on + strand, within Echvi_1159at 1326.740 kb on - strand, within Echvi_1159at 1326.813 kb on + strand, within Echvi_1159at 1326.813 kb on + strand, within Echvi_1159at 1326.814 kb on - strand, within Echvi_1159at 1326.814 kb on - strand, within Echvi_1159at 1326.858 kb on - strand, within Echvi_1159at 1326.863 kb on - strand, within Echvi_1159at 1326.965 kb on + strand, within Echvi_1159at 1326.974 kb on + strand, within Echvi_1159at 1326.974 kb on + strand, within Echvi_1159at 1326.974 kb on + strand, within Echvi_1159at 1326.975 kb on - strand, within Echvi_1159at 1326.996 kb on + strandat 1326.997 kb on - strandat 1326.997 kb on - strandat 1327.007 kb on + strandat 1327.008 kb on - strandat 1327.008 kb on - strandat 1327.008 kb on - strandat 1327.031 kb on - strandat 1327.031 kb on - strandat 1327.034 kb on + strandat 1327.035 kb on - strandat 1327.035 kb on - strandat 1327.109 kb on - strandat 1327.241 kb on + strandat 1327.241 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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1,324,436 + Echvi_1156 0.86 -0.1
1,324,596 - +1.1
1,324,607 - -1.4
1,324,613 + +0.5
1,324,614 - -0.6
1,324,619 - +1.1
1,324,633 - +0.8
1,324,633 - +1.8
1,324,633 - -0.7
1,324,650 - -1.3
1,324,657 + -0.7
1,324,658 - -1.9
1,324,662 - +1.3
1,324,676 + -0.6
1,324,690 + -0.6
1,324,691 - +1.5
1,324,691 - +2.1
1,324,691 - +0.0
1,324,701 + -1.3
1,324,787 - -1.7
1,324,810 + -2.4
1,324,854 + +0.1
1,324,912 + -0.4
1,324,912 + -1.3
1,324,912 + -0.2
1,324,924 + -1.3
1,324,925 - -0.5
1,324,925 - -2.6
1,324,925 - +0.8
1,324,925 - -0.8
1,324,945 + +0.4
1,324,945 + -3.6
1,324,945 + -1.8
1,324,952 - -0.2
1,325,018 - Echvi_1157 0.16 -0.6
1,325,021 + Echvi_1157 0.17 -2.0
1,325,021 + Echvi_1157 0.17 +0.3
1,325,022 - Echvi_1157 0.17 -0.4
1,325,022 - Echvi_1157 0.17 -0.6
1,325,022 - Echvi_1157 0.17 +0.0
1,325,024 - Echvi_1157 0.18 -2.0
1,325,077 + Echvi_1157 0.33 -2.2
1,325,077 + Echvi_1157 0.33 -0.1
1,325,083 + Echvi_1157 0.34 +0.6
1,325,104 - Echvi_1157 0.40 -0.8
1,325,187 - Echvi_1157 0.63 -0.8
1,325,203 + Echvi_1157 0.68 +0.1
1,325,204 - Echvi_1157 0.68 -1.3
1,325,223 + Echvi_1157 0.73 +1.8
1,325,237 + Echvi_1157 0.77 +0.5
1,325,402 + -0.6
1,325,421 - +1.2
1,325,424 + +0.8
1,325,449 + -1.3
1,325,539 - Echvi_1158 0.15 +0.4
1,325,539 - Echvi_1158 0.15 +1.6
1,325,600 + Echvi_1158 0.22 +2.2
1,325,601 - Echvi_1158 0.22 +2.2
1,325,649 + Echvi_1158 0.28 +0.9
1,325,650 - Echvi_1158 0.28 -0.7
1,325,695 + Echvi_1158 0.33 +0.4
1,325,746 + Echvi_1158 0.39 -0.3
1,325,746 + Echvi_1158 0.39 +0.4
1,325,747 - Echvi_1158 0.40 +1.0
1,325,764 + Echvi_1158 0.41 +2.1
1,325,765 - Echvi_1158 0.42 +0.2
1,325,765 - Echvi_1158 0.42 +0.9
1,325,765 - Echvi_1158 0.42 -0.3
1,325,765 - Echvi_1158 0.42 -0.4
1,325,771 - Echvi_1158 0.42 -0.3
1,325,895 - Echvi_1158 0.57 +1.1
1,325,904 + Echvi_1158 0.58 -0.3
1,325,904 + Echvi_1158 0.58 +2.2
1,325,953 + Echvi_1158 0.64 -0.3
1,325,953 + Echvi_1158 0.64 -1.5
1,326,070 + Echvi_1158 0.77 +0.7
1,326,071 - Echvi_1158 0.77 +0.8
1,326,071 - Echvi_1158 0.77 +0.7
1,326,082 + Echvi_1158 0.79 +0.0
1,326,082 + Echvi_1158 0.79 -0.3
1,326,090 - Echvi_1158 0.79 +0.3
1,326,128 - Echvi_1158 0.84 +0.4
1,326,128 - Echvi_1158 0.84 +0.4
1,326,202 + -0.1
1,326,202 + +0.5
1,326,203 - +0.4
1,326,281 + -0.6
1,326,282 - +0.9
1,326,432 + Echvi_1159 0.18 -2.4
1,326,433 - Echvi_1159 0.18 -0.6
1,326,475 - Echvi_1159 0.24 -0.1
1,326,475 - Echvi_1159 0.24 -0.1
1,326,491 - Echvi_1159 0.26 +0.4
1,326,509 + Echvi_1159 0.28 +1.0
1,326,524 + Echvi_1159 0.30 +1.1
1,326,535 + Echvi_1159 0.32 +0.2
1,326,536 - Echvi_1159 0.32 +0.6
1,326,539 + Echvi_1159 0.32 -0.0
1,326,540 - Echvi_1159 0.32 +1.1
1,326,540 - Echvi_1159 0.32 -1.6
1,326,597 - Echvi_1159 0.40 +1.1
1,326,597 - Echvi_1159 0.40 +1.2
1,326,652 + Echvi_1159 0.47 +0.9
1,326,653 - Echvi_1159 0.47 -0.3
1,326,653 - Echvi_1159 0.47 +0.7
1,326,653 - Echvi_1159 0.47 -1.3
1,326,653 - Echvi_1159 0.47 -1.0
1,326,657 + Echvi_1159 0.47 +0.0
1,326,740 - Echvi_1159 0.58 +1.9
1,326,813 + Echvi_1159 0.68 +1.2
1,326,813 + Echvi_1159 0.68 -0.1
1,326,814 - Echvi_1159 0.68 +1.1
1,326,814 - Echvi_1159 0.68 -0.9
1,326,858 - Echvi_1159 0.74 -0.1
1,326,863 - Echvi_1159 0.74 -0.6
1,326,965 + Echvi_1159 0.87 +1.5
1,326,974 + Echvi_1159 0.89 +0.4
1,326,974 + Echvi_1159 0.89 +1.2
1,326,974 + Echvi_1159 0.89 -0.1
1,326,975 - Echvi_1159 0.89 -0.7
1,326,996 + +0.4
1,326,997 - -1.1
1,326,997 - -1.3
1,327,007 + +1.5
1,327,008 - +0.8
1,327,008 - +0.4
1,327,008 - +1.0
1,327,031 - -0.5
1,327,031 - +0.9
1,327,034 + +0.6
1,327,035 - -1.2
1,327,035 - +0.7
1,327,109 - +0.5
1,327,241 + +0.2
1,327,241 + -1.5

Or see this region's nucleotide sequence