Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1156 and Echvi_1157 are separated by 363 nucleotides Echvi_1157 and Echvi_1158 are separated by 89 nucleotides Echvi_1158 and Echvi_1159 are separated by 25 nucleotides Echvi_1159 and Echvi_1160 are separated by 103 nucleotides
Echvi_1156: Echvi_1156 - recF protein, at 1,323,489 to 1,324,595
_1156
Echvi_1157: Echvi_1157 - hypothetical protein, at 1,324,959 to 1,325,318
_1157
Echvi_1158: Echvi_1158 - nicotinate-nucleotide pyrophosphorylase, at 1,325,408 to 1,326,265
_1158
Echvi_1159: Echvi_1159 - Response regulator of the LytR/AlgR family, at 1,326,291 to 1,327,061
_1159
Echvi_1160: Echvi_1160 - Alpha-L-fucosidase, at 1,327,165 to 1,329,219
_1160
Position (kb)
1325
1326
1327 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1324.436 kb on + strand, within Echvi_1156 at 1324.596 kb on - strand at 1324.607 kb on - strand at 1324.613 kb on + strand at 1324.614 kb on - strand at 1324.619 kb on - strand at 1324.633 kb on - strand at 1324.633 kb on - strand at 1324.633 kb on - strand at 1324.650 kb on - strand at 1324.657 kb on + strand at 1324.658 kb on - strand at 1324.662 kb on - strand at 1324.676 kb on + strand at 1324.690 kb on + strand at 1324.691 kb on - strand at 1324.691 kb on - strand at 1324.691 kb on - strand at 1324.701 kb on + strand at 1324.787 kb on - strand at 1324.810 kb on + strand at 1324.854 kb on + strand at 1324.912 kb on + strand at 1324.912 kb on + strand at 1324.912 kb on + strand at 1324.924 kb on + strand at 1324.925 kb on - strand at 1324.925 kb on - strand at 1324.925 kb on - strand at 1324.925 kb on - strand at 1324.945 kb on + strand at 1324.945 kb on + strand at 1324.945 kb on + strand at 1324.952 kb on - strand at 1325.018 kb on - strand, within Echvi_1157 at 1325.021 kb on + strand, within Echvi_1157 at 1325.021 kb on + strand, within Echvi_1157 at 1325.022 kb on - strand, within Echvi_1157 at 1325.022 kb on - strand, within Echvi_1157 at 1325.022 kb on - strand, within Echvi_1157 at 1325.024 kb on - strand, within Echvi_1157 at 1325.077 kb on + strand, within Echvi_1157 at 1325.077 kb on + strand, within Echvi_1157 at 1325.083 kb on + strand, within Echvi_1157 at 1325.104 kb on - strand, within Echvi_1157 at 1325.187 kb on - strand, within Echvi_1157 at 1325.203 kb on + strand, within Echvi_1157 at 1325.204 kb on - strand, within Echvi_1157 at 1325.223 kb on + strand, within Echvi_1157 at 1325.237 kb on + strand, within Echvi_1157 at 1325.402 kb on + strand at 1325.421 kb on - strand at 1325.424 kb on + strand at 1325.449 kb on + strand at 1325.539 kb on - strand, within Echvi_1158 at 1325.539 kb on - strand, within Echvi_1158 at 1325.600 kb on + strand, within Echvi_1158 at 1325.601 kb on - strand, within Echvi_1158 at 1325.649 kb on + strand, within Echvi_1158 at 1325.650 kb on - strand, within Echvi_1158 at 1325.695 kb on + strand, within Echvi_1158 at 1325.746 kb on + strand, within Echvi_1158 at 1325.746 kb on + strand, within Echvi_1158 at 1325.747 kb on - strand, within Echvi_1158 at 1325.764 kb on + strand, within Echvi_1158 at 1325.765 kb on - strand, within Echvi_1158 at 1325.765 kb on - strand, within Echvi_1158 at 1325.765 kb on - strand, within Echvi_1158 at 1325.765 kb on - strand, within Echvi_1158 at 1325.771 kb on - strand, within Echvi_1158 at 1325.895 kb on - strand, within Echvi_1158 at 1325.904 kb on + strand, within Echvi_1158 at 1325.904 kb on + strand, within Echvi_1158 at 1325.953 kb on + strand, within Echvi_1158 at 1325.953 kb on + strand, within Echvi_1158 at 1326.070 kb on + strand, within Echvi_1158 at 1326.071 kb on - strand, within Echvi_1158 at 1326.071 kb on - strand, within Echvi_1158 at 1326.082 kb on + strand, within Echvi_1158 at 1326.082 kb on + strand, within Echvi_1158 at 1326.090 kb on - strand, within Echvi_1158 at 1326.128 kb on - strand, within Echvi_1158 at 1326.128 kb on - strand, within Echvi_1158 at 1326.202 kb on + strand at 1326.202 kb on + strand at 1326.203 kb on - strand at 1326.281 kb on + strand at 1326.282 kb on - strand at 1326.432 kb on + strand, within Echvi_1159 at 1326.433 kb on - strand, within Echvi_1159 at 1326.475 kb on - strand, within Echvi_1159 at 1326.475 kb on - strand, within Echvi_1159 at 1326.491 kb on - strand, within Echvi_1159 at 1326.509 kb on + strand, within Echvi_1159 at 1326.524 kb on + strand, within Echvi_1159 at 1326.535 kb on + strand, within Echvi_1159 at 1326.536 kb on - strand, within Echvi_1159 at 1326.539 kb on + strand, within Echvi_1159 at 1326.540 kb on - strand, within Echvi_1159 at 1326.540 kb on - strand, within Echvi_1159 at 1326.597 kb on - strand, within Echvi_1159 at 1326.597 kb on - strand, within Echvi_1159 at 1326.652 kb on + strand, within Echvi_1159 at 1326.653 kb on - strand, within Echvi_1159 at 1326.653 kb on - strand, within Echvi_1159 at 1326.653 kb on - strand, within Echvi_1159 at 1326.653 kb on - strand, within Echvi_1159 at 1326.657 kb on + strand, within Echvi_1159 at 1326.740 kb on - strand, within Echvi_1159 at 1326.813 kb on + strand, within Echvi_1159 at 1326.813 kb on + strand, within Echvi_1159 at 1326.814 kb on - strand, within Echvi_1159 at 1326.814 kb on - strand, within Echvi_1159 at 1326.858 kb on - strand, within Echvi_1159 at 1326.863 kb on - strand, within Echvi_1159 at 1326.965 kb on + strand, within Echvi_1159 at 1326.974 kb on + strand, within Echvi_1159 at 1326.974 kb on + strand, within Echvi_1159 at 1326.974 kb on + strand, within Echvi_1159 at 1326.975 kb on - strand, within Echvi_1159 at 1326.996 kb on + strand at 1326.997 kb on - strand at 1326.997 kb on - strand at 1327.007 kb on + strand at 1327.008 kb on - strand at 1327.008 kb on - strand at 1327.008 kb on - strand at 1327.031 kb on - strand at 1327.031 kb on - strand at 1327.034 kb on + strand at 1327.035 kb on - strand at 1327.035 kb on - strand at 1327.109 kb on - strand at 1327.241 kb on + strand at 1327.241 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 1,324,436 + Echvi_1156 0.86 -0.1 1,324,596 - +1.1 1,324,607 - -1.4 1,324,613 + +0.5 1,324,614 - -0.6 1,324,619 - +1.1 1,324,633 - +0.8 1,324,633 - +1.8 1,324,633 - -0.7 1,324,650 - -1.3 1,324,657 + -0.7 1,324,658 - -1.9 1,324,662 - +1.3 1,324,676 + -0.6 1,324,690 + -0.6 1,324,691 - +1.5 1,324,691 - +2.1 1,324,691 - +0.0 1,324,701 + -1.3 1,324,787 - -1.7 1,324,810 + -2.4 1,324,854 + +0.1 1,324,912 + -0.4 1,324,912 + -1.3 1,324,912 + -0.2 1,324,924 + -1.3 1,324,925 - -0.5 1,324,925 - -2.6 1,324,925 - +0.8 1,324,925 - -0.8 1,324,945 + +0.4 1,324,945 + -3.6 1,324,945 + -1.8 1,324,952 - -0.2 1,325,018 - Echvi_1157 0.16 -0.6 1,325,021 + Echvi_1157 0.17 -2.0 1,325,021 + Echvi_1157 0.17 +0.3 1,325,022 - Echvi_1157 0.17 -0.4 1,325,022 - Echvi_1157 0.17 -0.6 1,325,022 - Echvi_1157 0.17 +0.0 1,325,024 - Echvi_1157 0.18 -2.0 1,325,077 + Echvi_1157 0.33 -2.2 1,325,077 + Echvi_1157 0.33 -0.1 1,325,083 + Echvi_1157 0.34 +0.6 1,325,104 - Echvi_1157 0.40 -0.8 1,325,187 - Echvi_1157 0.63 -0.8 1,325,203 + Echvi_1157 0.68 +0.1 1,325,204 - Echvi_1157 0.68 -1.3 1,325,223 + Echvi_1157 0.73 +1.8 1,325,237 + Echvi_1157 0.77 +0.5 1,325,402 + -0.6 1,325,421 - +1.2 1,325,424 + +0.8 1,325,449 + -1.3 1,325,539 - Echvi_1158 0.15 +0.4 1,325,539 - Echvi_1158 0.15 +1.6 1,325,600 + Echvi_1158 0.22 +2.2 1,325,601 - Echvi_1158 0.22 +2.2 1,325,649 + Echvi_1158 0.28 +0.9 1,325,650 - Echvi_1158 0.28 -0.7 1,325,695 + Echvi_1158 0.33 +0.4 1,325,746 + Echvi_1158 0.39 -0.3 1,325,746 + Echvi_1158 0.39 +0.4 1,325,747 - Echvi_1158 0.40 +1.0 1,325,764 + Echvi_1158 0.41 +2.1 1,325,765 - Echvi_1158 0.42 +0.2 1,325,765 - Echvi_1158 0.42 +0.9 1,325,765 - Echvi_1158 0.42 -0.3 1,325,765 - Echvi_1158 0.42 -0.4 1,325,771 - Echvi_1158 0.42 -0.3 1,325,895 - Echvi_1158 0.57 +1.1 1,325,904 + Echvi_1158 0.58 -0.3 1,325,904 + Echvi_1158 0.58 +2.2 1,325,953 + Echvi_1158 0.64 -0.3 1,325,953 + Echvi_1158 0.64 -1.5 1,326,070 + Echvi_1158 0.77 +0.7 1,326,071 - Echvi_1158 0.77 +0.8 1,326,071 - Echvi_1158 0.77 +0.7 1,326,082 + Echvi_1158 0.79 +0.0 1,326,082 + Echvi_1158 0.79 -0.3 1,326,090 - Echvi_1158 0.79 +0.3 1,326,128 - Echvi_1158 0.84 +0.4 1,326,128 - Echvi_1158 0.84 +0.4 1,326,202 + -0.1 1,326,202 + +0.5 1,326,203 - +0.4 1,326,281 + -0.6 1,326,282 - +0.9 1,326,432 + Echvi_1159 0.18 -2.4 1,326,433 - Echvi_1159 0.18 -0.6 1,326,475 - Echvi_1159 0.24 -0.1 1,326,475 - Echvi_1159 0.24 -0.1 1,326,491 - Echvi_1159 0.26 +0.4 1,326,509 + Echvi_1159 0.28 +1.0 1,326,524 + Echvi_1159 0.30 +1.1 1,326,535 + Echvi_1159 0.32 +0.2 1,326,536 - Echvi_1159 0.32 +0.6 1,326,539 + Echvi_1159 0.32 -0.0 1,326,540 - Echvi_1159 0.32 +1.1 1,326,540 - Echvi_1159 0.32 -1.6 1,326,597 - Echvi_1159 0.40 +1.1 1,326,597 - Echvi_1159 0.40 +1.2 1,326,652 + Echvi_1159 0.47 +0.9 1,326,653 - Echvi_1159 0.47 -0.3 1,326,653 - Echvi_1159 0.47 +0.7 1,326,653 - Echvi_1159 0.47 -1.3 1,326,653 - Echvi_1159 0.47 -1.0 1,326,657 + Echvi_1159 0.47 +0.0 1,326,740 - Echvi_1159 0.58 +1.9 1,326,813 + Echvi_1159 0.68 +1.2 1,326,813 + Echvi_1159 0.68 -0.1 1,326,814 - Echvi_1159 0.68 +1.1 1,326,814 - Echvi_1159 0.68 -0.9 1,326,858 - Echvi_1159 0.74 -0.1 1,326,863 - Echvi_1159 0.74 -0.6 1,326,965 + Echvi_1159 0.87 +1.5 1,326,974 + Echvi_1159 0.89 +0.4 1,326,974 + Echvi_1159 0.89 +1.2 1,326,974 + Echvi_1159 0.89 -0.1 1,326,975 - Echvi_1159 0.89 -0.7 1,326,996 + +0.4 1,326,997 - -1.1 1,326,997 - -1.3 1,327,007 + +1.5 1,327,008 - +0.8 1,327,008 - +0.4 1,327,008 - +1.0 1,327,031 - -0.5 1,327,031 - +0.9 1,327,034 + +0.6 1,327,035 - -1.2 1,327,035 - +0.7 1,327,109 - +0.5 1,327,241 + +0.2 1,327,241 + -1.5
Or see this region's nucleotide sequence