Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1097 and Echvi_1098 are separated by 20 nucleotides Echvi_1098 and Echvi_1099 are separated by 25 nucleotides
Echvi_1097: Echvi_1097 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 1,256,787 to 1,257,878
_1097
Echvi_1098: Echvi_1098 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,257,899 to 1,259,290
_1098
Echvi_1099: Echvi_1099 - hypothetical protein, at 1,259,316 to 1,260,587
_1099
Position (kb)
1257
1258
1259
1260 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1256.977 kb on - strand, within Echvi_1097 at 1257.095 kb on + strand, within Echvi_1097 at 1257.095 kb on + strand, within Echvi_1097 at 1257.096 kb on - strand, within Echvi_1097 at 1257.096 kb on - strand, within Echvi_1097 at 1257.098 kb on + strand, within Echvi_1097 at 1257.098 kb on + strand, within Echvi_1097 at 1257.099 kb on - strand, within Echvi_1097 at 1257.099 kb on - strand, within Echvi_1097 at 1257.100 kb on + strand, within Echvi_1097 at 1257.100 kb on + strand, within Echvi_1097 at 1257.100 kb on + strand, within Echvi_1097 at 1257.101 kb on - strand, within Echvi_1097 at 1257.101 kb on - strand, within Echvi_1097 at 1257.101 kb on - strand, within Echvi_1097 at 1257.139 kb on - strand, within Echvi_1097 at 1257.139 kb on - strand, within Echvi_1097 at 1257.241 kb on - strand, within Echvi_1097 at 1257.433 kb on + strand, within Echvi_1097 at 1257.515 kb on + strand, within Echvi_1097 at 1257.556 kb on + strand, within Echvi_1097 at 1257.556 kb on + strand, within Echvi_1097 at 1257.556 kb on + strand, within Echvi_1097 at 1257.556 kb on + strand, within Echvi_1097 at 1257.556 kb on + strand, within Echvi_1097 at 1257.556 kb on + strand, within Echvi_1097 at 1257.556 kb on + strand, within Echvi_1097 at 1257.557 kb on - strand, within Echvi_1097 at 1257.558 kb on + strand, within Echvi_1097 at 1257.559 kb on - strand, within Echvi_1097 at 1257.600 kb on - strand, within Echvi_1097 at 1257.694 kb on + strand, within Echvi_1097 at 1257.695 kb on - strand, within Echvi_1097 at 1257.695 kb on - strand, within Echvi_1097 at 1257.728 kb on + strand, within Echvi_1097 at 1257.732 kb on + strand, within Echvi_1097 at 1257.733 kb on - strand, within Echvi_1097 at 1257.733 kb on - strand, within Echvi_1097 at 1257.843 kb on + strand at 1257.844 kb on - strand at 1257.920 kb on - strand at 1257.933 kb on + strand at 1257.934 kb on - strand at 1257.957 kb on + strand at 1257.958 kb on - strand at 1257.958 kb on - strand at 1257.996 kb on + strand at 1257.997 kb on - strand at 1257.997 kb on - strand at 1258.015 kb on + strand at 1258.084 kb on - strand, within Echvi_1098 at 1258.171 kb on + strand, within Echvi_1098 at 1258.182 kb on + strand, within Echvi_1098 at 1258.182 kb on + strand, within Echvi_1098 at 1258.183 kb on - strand, within Echvi_1098 at 1258.183 kb on - strand, within Echvi_1098 at 1258.183 kb on - strand, within Echvi_1098 at 1258.191 kb on + strand, within Echvi_1098 at 1258.191 kb on + strand, within Echvi_1098 at 1258.191 kb on + strand, within Echvi_1098 at 1258.192 kb on - strand, within Echvi_1098 at 1258.192 kb on - strand, within Echvi_1098 at 1258.220 kb on - strand, within Echvi_1098 at 1258.308 kb on + strand, within Echvi_1098 at 1258.309 kb on - strand, within Echvi_1098 at 1258.472 kb on + strand, within Echvi_1098 at 1258.473 kb on - strand, within Echvi_1098 at 1258.479 kb on + strand, within Echvi_1098 at 1258.479 kb on + strand, within Echvi_1098 at 1258.480 kb on - strand, within Echvi_1098 at 1258.541 kb on + strand, within Echvi_1098 at 1258.549 kb on - strand, within Echvi_1098 at 1258.549 kb on - strand, within Echvi_1098 at 1258.554 kb on + strand, within Echvi_1098 at 1258.554 kb on + strand, within Echvi_1098 at 1258.555 kb on - strand, within Echvi_1098 at 1258.555 kb on - strand, within Echvi_1098 at 1258.555 kb on - strand, within Echvi_1098 at 1258.555 kb on - strand, within Echvi_1098 at 1258.607 kb on + strand, within Echvi_1098 at 1258.653 kb on + strand, within Echvi_1098 at 1258.689 kb on + strand, within Echvi_1098 at 1258.702 kb on - strand, within Echvi_1098 at 1258.702 kb on - strand, within Echvi_1098 at 1258.702 kb on - strand, within Echvi_1098 at 1258.760 kb on - strand, within Echvi_1098 at 1258.760 kb on - strand, within Echvi_1098 at 1258.762 kb on - strand, within Echvi_1098 at 1258.828 kb on + strand, within Echvi_1098 at 1258.873 kb on + strand, within Echvi_1098 at 1258.874 kb on - strand, within Echvi_1098 at 1259.144 kb on + strand, within Echvi_1098 at 1259.249 kb on + strand at 1259.250 kb on - strand at 1259.250 kb on - strand at 1259.250 kb on - strand at 1259.283 kb on + strand at 1259.283 kb on + strand at 1259.283 kb on + strand at 1259.284 kb on - strand at 1259.299 kb on + strand at 1259.300 kb on - strand at 1259.307 kb on + strand at 1259.317 kb on + strand at 1259.318 kb on - strand at 1259.318 kb on - strand at 1259.318 kb on - strand at 1259.335 kb on - strand at 1259.339 kb on + strand at 1259.479 kb on + strand, within Echvi_1099 at 1259.479 kb on + strand, within Echvi_1099 at 1259.479 kb on + strand, within Echvi_1099 at 1259.480 kb on - strand, within Echvi_1099 at 1259.480 kb on - strand, within Echvi_1099 at 1259.480 kb on - strand, within Echvi_1099 at 1259.481 kb on + strand, within Echvi_1099 at 1259.481 kb on + strand, within Echvi_1099 at 1259.481 kb on + strand, within Echvi_1099 at 1259.481 kb on + strand, within Echvi_1099 at 1259.481 kb on + strand, within Echvi_1099 at 1259.481 kb on + strand, within Echvi_1099 at 1259.481 kb on + strand, within Echvi_1099 at 1259.482 kb on - strand, within Echvi_1099 at 1259.482 kb on - strand, within Echvi_1099 at 1259.482 kb on - strand, within Echvi_1099 at 1259.482 kb on - strand, within Echvi_1099 at 1259.490 kb on + strand, within Echvi_1099 at 1259.536 kb on + strand, within Echvi_1099 at 1259.615 kb on - strand, within Echvi_1099 at 1259.631 kb on + strand, within Echvi_1099 at 1259.631 kb on + strand, within Echvi_1099 at 1259.631 kb on + strand, within Echvi_1099 at 1259.631 kb on + strand, within Echvi_1099 at 1259.631 kb on + strand, within Echvi_1099 at 1259.631 kb on + strand, within Echvi_1099 at 1259.631 kb on + strand, within Echvi_1099 at 1259.632 kb on - strand, within Echvi_1099 at 1259.632 kb on - strand, within Echvi_1099 at 1259.632 kb on - strand, within Echvi_1099 at 1259.653 kb on - strand, within Echvi_1099 at 1259.657 kb on - strand, within Echvi_1099 at 1259.662 kb on + strand, within Echvi_1099 at 1259.663 kb on - strand, within Echvi_1099 at 1259.663 kb on - strand, within Echvi_1099 at 1259.732 kb on + strand, within Echvi_1099 at 1259.732 kb on + strand, within Echvi_1099 at 1259.755 kb on + strand, within Echvi_1099 at 1259.805 kb on - strand, within Echvi_1099 at 1259.805 kb on - strand, within Echvi_1099 at 1259.857 kb on + strand, within Echvi_1099 at 1259.857 kb on + strand, within Echvi_1099 at 1259.858 kb on - strand, within Echvi_1099 at 1259.858 kb on - strand, within Echvi_1099 at 1259.861 kb on - strand, within Echvi_1099 at 1259.874 kb on + strand, within Echvi_1099 at 1259.875 kb on - strand, within Echvi_1099 at 1259.875 kb on - strand, within Echvi_1099 at 1259.895 kb on + strand, within Echvi_1099 at 1259.895 kb on + strand, within Echvi_1099 at 1259.895 kb on + strand, within Echvi_1099 at 1259.937 kb on - strand, within Echvi_1099 at 1260.016 kb on + strand, within Echvi_1099 at 1260.017 kb on - strand, within Echvi_1099 at 1260.029 kb on + strand, within Echvi_1099 at 1260.030 kb on - strand, within Echvi_1099 at 1260.030 kb on - strand, within Echvi_1099 at 1260.031 kb on + strand, within Echvi_1099 at 1260.032 kb on - strand, within Echvi_1099 at 1260.042 kb on + strand, within Echvi_1099 at 1260.043 kb on - strand, within Echvi_1099 at 1260.048 kb on - strand, within Echvi_1099 at 1260.048 kb on - strand, within Echvi_1099 at 1260.050 kb on - strand, within Echvi_1099 at 1260.073 kb on - strand, within Echvi_1099 at 1260.073 kb on - strand, within Echvi_1099 at 1260.073 kb on - strand, within Echvi_1099 at 1260.073 kb on - strand, within Echvi_1099 at 1260.107 kb on + strand, within Echvi_1099 at 1260.109 kb on + strand, within Echvi_1099 at 1260.121 kb on - strand, within Echvi_1099 at 1260.121 kb on - strand, within Echvi_1099 at 1260.224 kb on + strand, within Echvi_1099 at 1260.229 kb on + strand, within Echvi_1099 at 1260.229 kb on + strand, within Echvi_1099 at 1260.229 kb on + strand, within Echvi_1099 at 1260.229 kb on + strand, within Echvi_1099
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 1,256,977 - Echvi_1097 0.17 +0.4 1,257,095 + Echvi_1097 0.28 +1.0 1,257,095 + Echvi_1097 0.28 -1.6 1,257,096 - Echvi_1097 0.28 -0.4 1,257,096 - Echvi_1097 0.28 +0.1 1,257,098 + Echvi_1097 0.28 +0.7 1,257,098 + Echvi_1097 0.28 -0.3 1,257,099 - Echvi_1097 0.29 -1.4 1,257,099 - Echvi_1097 0.29 +1.8 1,257,100 + Echvi_1097 0.29 +0.4 1,257,100 + Echvi_1097 0.29 +1.3 1,257,100 + Echvi_1097 0.29 +0.1 1,257,101 - Echvi_1097 0.29 +0.3 1,257,101 - Echvi_1097 0.29 +0.1 1,257,101 - Echvi_1097 0.29 +1.0 1,257,139 - Echvi_1097 0.32 -1.3 1,257,139 - Echvi_1097 0.32 -0.3 1,257,241 - Echvi_1097 0.42 -0.6 1,257,433 + Echvi_1097 0.59 -0.1 1,257,515 + Echvi_1097 0.67 -0.5 1,257,556 + Echvi_1097 0.70 -2.3 1,257,556 + Echvi_1097 0.70 -0.9 1,257,556 + Echvi_1097 0.70 +0.0 1,257,556 + Echvi_1097 0.70 -0.6 1,257,556 + Echvi_1097 0.70 +0.8 1,257,556 + Echvi_1097 0.70 -1.6 1,257,556 + Echvi_1097 0.70 +0.1 1,257,557 - Echvi_1097 0.71 -1.3 1,257,558 + Echvi_1097 0.71 -1.4 1,257,559 - Echvi_1097 0.71 +0.3 1,257,600 - Echvi_1097 0.74 +0.3 1,257,694 + Echvi_1097 0.83 -0.6 1,257,695 - Echvi_1097 0.83 +1.4 1,257,695 - Echvi_1097 0.83 -2.3 1,257,728 + Echvi_1097 0.86 +0.5 1,257,732 + Echvi_1097 0.87 -0.4 1,257,733 - Echvi_1097 0.87 -1.5 1,257,733 - Echvi_1097 0.87 -0.6 1,257,843 + -0.8 1,257,844 - +0.5 1,257,920 - +1.6 1,257,933 + +0.4 1,257,934 - -0.1 1,257,957 + +1.6 1,257,958 - +0.9 1,257,958 - -0.7 1,257,996 + +2.2 1,257,997 - -0.2 1,257,997 - -0.0 1,258,015 + +0.2 1,258,084 - Echvi_1098 0.13 -0.5 1,258,171 + Echvi_1098 0.20 -1.0 1,258,182 + Echvi_1098 0.20 -0.4 1,258,182 + Echvi_1098 0.20 -0.2 1,258,183 - Echvi_1098 0.20 +2.7 1,258,183 - Echvi_1098 0.20 +0.1 1,258,183 - Echvi_1098 0.20 -2.7 1,258,191 + Echvi_1098 0.21 +0.4 1,258,191 + Echvi_1098 0.21 -0.1 1,258,191 + Echvi_1098 0.21 -0.6 1,258,192 - Echvi_1098 0.21 -0.6 1,258,192 - Echvi_1098 0.21 -1.4 1,258,220 - Echvi_1098 0.23 -0.1 1,258,308 + Echvi_1098 0.29 -0.1 1,258,309 - Echvi_1098 0.29 +0.8 1,258,472 + Echvi_1098 0.41 +0.1 1,258,473 - Echvi_1098 0.41 -1.9 1,258,479 + Echvi_1098 0.42 +0.6 1,258,479 + Echvi_1098 0.42 -0.6 1,258,480 - Echvi_1098 0.42 -0.6 1,258,541 + Echvi_1098 0.46 -1.1 1,258,549 - Echvi_1098 0.47 -0.2 1,258,549 - Echvi_1098 0.47 +1.0 1,258,554 + Echvi_1098 0.47 -0.6 1,258,554 + Echvi_1098 0.47 +0.1 1,258,555 - Echvi_1098 0.47 +1.0 1,258,555 - Echvi_1098 0.47 -1.9 1,258,555 - Echvi_1098 0.47 -1.0 1,258,555 - Echvi_1098 0.47 -0.4 1,258,607 + Echvi_1098 0.51 -0.9 1,258,653 + Echvi_1098 0.54 -1.5 1,258,689 + Echvi_1098 0.57 -0.1 1,258,702 - Echvi_1098 0.58 -0.1 1,258,702 - Echvi_1098 0.58 +0.7 1,258,702 - Echvi_1098 0.58 -0.3 1,258,760 - Echvi_1098 0.62 +0.5 1,258,760 - Echvi_1098 0.62 -2.7 1,258,762 - Echvi_1098 0.62 +0.3 1,258,828 + Echvi_1098 0.67 +0.0 1,258,873 + Echvi_1098 0.70 -1.5 1,258,874 - Echvi_1098 0.70 -2.4 1,259,144 + Echvi_1098 0.89 -2.7 1,259,249 + +0.4 1,259,250 - -0.1 1,259,250 - -1.5 1,259,250 - -1.9 1,259,283 + +1.0 1,259,283 + -1.1 1,259,283 + -0.4 1,259,284 - +0.1 1,259,299 + -1.2 1,259,300 - +1.3 1,259,307 + +1.3 1,259,317 + -1.1 1,259,318 - +0.2 1,259,318 - +1.8 1,259,318 - -0.2 1,259,335 - -2.3 1,259,339 + -1.1 1,259,479 + Echvi_1099 0.13 -2.6 1,259,479 + Echvi_1099 0.13 -0.9 1,259,479 + Echvi_1099 0.13 -2.4 1,259,480 - Echvi_1099 0.13 -1.7 1,259,480 - Echvi_1099 0.13 -0.8 1,259,480 - Echvi_1099 0.13 -1.2 1,259,481 + Echvi_1099 0.13 +0.8 1,259,481 + Echvi_1099 0.13 -2.5 1,259,481 + Echvi_1099 0.13 -1.5 1,259,481 + Echvi_1099 0.13 +0.6 1,259,481 + Echvi_1099 0.13 -0.8 1,259,481 + Echvi_1099 0.13 +0.6 1,259,481 + Echvi_1099 0.13 +0.7 1,259,482 - Echvi_1099 0.13 -2.3 1,259,482 - Echvi_1099 0.13 -2.1 1,259,482 - Echvi_1099 0.13 +0.5 1,259,482 - Echvi_1099 0.13 -0.6 1,259,490 + Echvi_1099 0.14 -0.1 1,259,536 + Echvi_1099 0.17 +0.2 1,259,615 - Echvi_1099 0.24 -2.1 1,259,631 + Echvi_1099 0.25 +0.7 1,259,631 + Echvi_1099 0.25 +0.0 1,259,631 + Echvi_1099 0.25 -0.9 1,259,631 + Echvi_1099 0.25 -1.0 1,259,631 + Echvi_1099 0.25 +0.8 1,259,631 + Echvi_1099 0.25 -0.4 1,259,631 + Echvi_1099 0.25 +0.8 1,259,632 - Echvi_1099 0.25 -1.9 1,259,632 - Echvi_1099 0.25 -0.4 1,259,632 - Echvi_1099 0.25 -0.4 1,259,653 - Echvi_1099 0.26 -1.3 1,259,657 - Echvi_1099 0.27 +0.2 1,259,662 + Echvi_1099 0.27 +1.8 1,259,663 - Echvi_1099 0.27 +0.8 1,259,663 - Echvi_1099 0.27 -1.0 1,259,732 + Echvi_1099 0.33 +0.3 1,259,732 + Echvi_1099 0.33 -0.6 1,259,755 + Echvi_1099 0.35 -1.4 1,259,805 - Echvi_1099 0.38 -0.9 1,259,805 - Echvi_1099 0.38 -1.1 1,259,857 + Echvi_1099 0.43 +0.2 1,259,857 + Echvi_1099 0.43 +0.8 1,259,858 - Echvi_1099 0.43 -1.0 1,259,858 - Echvi_1099 0.43 -1.5 1,259,861 - Echvi_1099 0.43 -1.0 1,259,874 + Echvi_1099 0.44 +0.8 1,259,875 - Echvi_1099 0.44 +1.0 1,259,875 - Echvi_1099 0.44 +1.4 1,259,895 + Echvi_1099 0.46 +1.0 1,259,895 + Echvi_1099 0.46 +2.2 1,259,895 + Echvi_1099 0.46 -0.6 1,259,937 - Echvi_1099 0.49 -1.7 1,260,016 + Echvi_1099 0.55 +0.3 1,260,017 - Echvi_1099 0.55 +0.9 1,260,029 + Echvi_1099 0.56 +0.4 1,260,030 - Echvi_1099 0.56 +1.0 1,260,030 - Echvi_1099 0.56 -1.0 1,260,031 + Echvi_1099 0.56 -0.4 1,260,032 - Echvi_1099 0.56 -1.1 1,260,042 + Echvi_1099 0.57 -0.5 1,260,043 - Echvi_1099 0.57 +2.8 1,260,048 - Echvi_1099 0.58 +0.2 1,260,048 - Echvi_1099 0.58 -0.7 1,260,050 - Echvi_1099 0.58 -1.2 1,260,073 - Echvi_1099 0.60 -2.2 1,260,073 - Echvi_1099 0.60 -0.1 1,260,073 - Echvi_1099 0.60 -0.3 1,260,073 - Echvi_1099 0.60 +0.7 1,260,107 + Echvi_1099 0.62 +0.0 1,260,109 + Echvi_1099 0.62 -1.2 1,260,121 - Echvi_1099 0.63 -1.1 1,260,121 - Echvi_1099 0.63 +1.2 1,260,224 + Echvi_1099 0.71 -0.5 1,260,229 + Echvi_1099 0.72 -0.1 1,260,229 + Echvi_1099 0.72 -1.1 1,260,229 + Echvi_1099 0.72 -0.4 1,260,229 + Echvi_1099 0.72 -0.3
Or see this region's nucleotide sequence