Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0823

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0823 and Echvi_0824 are separated by 8 nucleotides Echvi_0823: Echvi_0823 - PAS domain S-box, at 940,229 to 941,956 _0823 Echvi_0824: Echvi_0824 - iron-sulfur cluster binding protein, putative, at 941,965 to 942,924 _0824 Position (kb) 940 941 942Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 939.234 kb on + strandat 939.235 kb on - strandat 939.236 kb on + strandat 939.236 kb on + strandat 939.236 kb on + strandat 939.236 kb on + strandat 939.236 kb on + strandat 939.296 kb on + strandat 939.296 kb on + strandat 939.296 kb on + strandat 939.329 kb on - strandat 939.427 kb on + strandat 939.478 kb on + strandat 939.478 kb on + strandat 939.478 kb on + strandat 939.479 kb on - strandat 939.479 kb on - strandat 939.481 kb on - strandat 939.481 kb on - strandat 939.508 kb on + strandat 939.569 kb on + strandat 939.569 kb on + strandat 939.570 kb on - strandat 939.574 kb on + strandat 939.609 kb on + strandat 939.612 kb on + strandat 939.612 kb on + strandat 939.724 kb on + strandat 939.724 kb on + strandat 939.763 kb on + strandat 939.763 kb on + strandat 939.764 kb on - strandat 939.764 kb on - strandat 939.764 kb on - strandat 939.819 kb on + strandat 939.820 kb on - strandat 939.871 kb on + strandat 939.871 kb on + strandat 939.988 kb on + strandat 939.988 kb on + strandat 939.989 kb on - strandat 940.087 kb on - strandat 940.097 kb on - strandat 940.172 kb on - strandat 940.192 kb on + strandat 940.247 kb on + strandat 940.247 kb on + strandat 940.247 kb on + strandat 940.248 kb on - strandat 940.248 kb on - strandat 940.248 kb on - strandat 940.250 kb on + strandat 940.250 kb on + strandat 940.270 kb on + strandat 940.285 kb on + strandat 940.286 kb on - strandat 940.291 kb on - strandat 940.304 kb on - strandat 940.346 kb on + strandat 940.346 kb on + strandat 940.347 kb on - strandat 940.458 kb on - strand, within Echvi_0823at 940.519 kb on - strand, within Echvi_0823at 940.538 kb on + strand, within Echvi_0823at 940.539 kb on - strand, within Echvi_0823at 940.539 kb on - strand, within Echvi_0823at 940.541 kb on + strand, within Echvi_0823at 940.541 kb on + strand, within Echvi_0823at 940.542 kb on - strand, within Echvi_0823at 940.542 kb on - strand, within Echvi_0823at 940.542 kb on - strand, within Echvi_0823at 940.610 kb on + strand, within Echvi_0823at 940.611 kb on - strand, within Echvi_0823at 940.619 kb on + strand, within Echvi_0823at 940.620 kb on - strand, within Echvi_0823at 940.620 kb on - strand, within Echvi_0823at 940.671 kb on - strand, within Echvi_0823at 940.672 kb on + strand, within Echvi_0823at 940.673 kb on - strand, within Echvi_0823at 940.727 kb on - strand, within Echvi_0823at 940.795 kb on - strand, within Echvi_0823at 940.840 kb on - strand, within Echvi_0823at 940.840 kb on - strand, within Echvi_0823at 940.840 kb on - strand, within Echvi_0823at 940.866 kb on - strand, within Echvi_0823at 940.866 kb on - strand, within Echvi_0823at 940.887 kb on + strand, within Echvi_0823at 940.887 kb on + strand, within Echvi_0823at 940.888 kb on - strand, within Echvi_0823at 940.888 kb on - strand, within Echvi_0823at 940.900 kb on + strand, within Echvi_0823at 940.971 kb on + strand, within Echvi_0823at 940.971 kb on + strand, within Echvi_0823at 940.971 kb on + strand, within Echvi_0823at 940.984 kb on - strand, within Echvi_0823at 941.044 kb on + strand, within Echvi_0823at 941.045 kb on - strand, within Echvi_0823at 941.045 kb on - strand, within Echvi_0823at 941.045 kb on - strand, within Echvi_0823at 941.045 kb on - strand, within Echvi_0823at 941.045 kb on - strand, within Echvi_0823at 941.045 kb on - strand, within Echvi_0823at 941.045 kb on - strand, within Echvi_0823at 941.045 kb on - strand, within Echvi_0823at 941.054 kb on + strand, within Echvi_0823at 941.204 kb on + strand, within Echvi_0823at 941.205 kb on - strand, within Echvi_0823at 941.212 kb on + strand, within Echvi_0823at 941.212 kb on + strand, within Echvi_0823at 941.213 kb on - strand, within Echvi_0823at 941.217 kb on + strand, within Echvi_0823at 941.218 kb on - strand, within Echvi_0823at 941.314 kb on + strand, within Echvi_0823at 941.317 kb on + strand, within Echvi_0823at 941.346 kb on + strand, within Echvi_0823at 941.347 kb on - strand, within Echvi_0823at 941.347 kb on - strand, within Echvi_0823at 941.433 kb on - strand, within Echvi_0823at 941.538 kb on + strand, within Echvi_0823at 941.597 kb on + strand, within Echvi_0823at 941.624 kb on + strand, within Echvi_0823at 941.624 kb on + strand, within Echvi_0823at 941.625 kb on - strand, within Echvi_0823at 941.625 kb on - strand, within Echvi_0823at 941.625 kb on - strand, within Echvi_0823at 941.625 kb on - strand, within Echvi_0823at 941.625 kb on - strand, within Echvi_0823at 941.655 kb on + strand, within Echvi_0823at 941.657 kb on + strand, within Echvi_0823at 941.657 kb on + strandat 941.657 kb on + strand, within Echvi_0823at 941.657 kb on + strand, within Echvi_0823at 941.658 kb on - strand, within Echvi_0823at 941.658 kb on - strand, within Echvi_0823at 941.658 kb on - strand, within Echvi_0823at 941.658 kb on - strand, within Echvi_0823at 941.658 kb on - strand, within Echvi_0823at 941.670 kb on + strand, within Echvi_0823at 941.723 kb on + strand, within Echvi_0823at 941.724 kb on - strand, within Echvi_0823at 941.724 kb on - strand, within Echvi_0823at 941.724 kb on - strand, within Echvi_0823at 941.724 kb on - strand, within Echvi_0823at 941.726 kb on - strand, within Echvi_0823at 941.726 kb on - strand, within Echvi_0823at 941.828 kb on + strandat 941.829 kb on - strandat 941.912 kb on - strandat 941.955 kb on - strandat 941.955 kb on - strandat 941.960 kb on + strandat 941.961 kb on - strandat 941.961 kb on - strandat 941.974 kb on - strandat 942.064 kb on - strand, within Echvi_0824at 942.256 kb on + strand, within Echvi_0824at 942.256 kb on + strand, within Echvi_0824at 942.262 kb on - strand, within Echvi_0824at 942.267 kb on - strand, within Echvi_0824at 942.267 kb on - strand, within Echvi_0824at 942.273 kb on + strand, within Echvi_0824at 942.356 kb on + strand, within Echvi_0824at 942.357 kb on - strand, within Echvi_0824at 942.453 kb on + strand, within Echvi_0824at 942.453 kb on + strand, within Echvi_0824at 942.453 kb on + strand, within Echvi_0824at 942.566 kb on + strand, within Echvi_0824at 942.581 kb on - strand, within Echvi_0824at 942.623 kb on + strand, within Echvi_0824at 942.624 kb on - strand, within Echvi_0824at 942.624 kb on - strand, within Echvi_0824at 942.624 kb on - strand, within Echvi_0824at 942.624 kb on - strand, within Echvi_0824at 942.677 kb on + strand, within Echvi_0824at 942.678 kb on - strand, within Echvi_0824at 942.678 kb on - strand, within Echvi_0824at 942.683 kb on + strand, within Echvi_0824at 942.779 kb on + strand, within Echvi_0824at 942.780 kb on - strand, within Echvi_0824at 942.780 kb on - strand, within Echvi_0824at 942.780 kb on - strand, within Echvi_0824at 942.783 kb on + strand, within Echvi_0824at 942.784 kb on - strand, within Echvi_0824at 942.784 kb on - strand, within Echvi_0824at 942.852 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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939,234 + -0.4
939,235 - +1.2
939,236 + -0.4
939,236 + +1.5
939,236 + -0.5
939,236 + +0.1
939,236 + +1.2
939,296 + +2.2
939,296 + -1.6
939,296 + +1.4
939,329 - +1.6
939,427 + -0.2
939,478 + +1.6
939,478 + +0.2
939,478 + -0.8
939,479 - -1.4
939,479 - +0.3
939,481 - +0.2
939,481 - +1.1
939,508 + +1.6
939,569 + -0.2
939,569 + +0.5
939,570 - -0.1
939,574 + +1.8
939,609 + -0.5
939,612 + +0.6
939,612 + +0.2
939,724 + -0.2
939,724 + +0.6
939,763 + -0.5
939,763 + +0.2
939,764 - -0.9
939,764 - +1.0
939,764 - -0.2
939,819 + +0.9
939,820 - -0.6
939,871 + +0.1
939,871 + -2.3
939,988 + -2.1
939,988 + -0.4
939,989 - +0.2
940,087 - -1.3
940,097 - -1.8
940,172 - +1.5
940,192 + -0.7
940,247 + -1.2
940,247 + +0.2
940,247 + -0.7
940,248 - -2.4
940,248 - -0.1
940,248 - +1.6
940,250 + -0.3
940,250 + +1.2
940,270 + -1.1
940,285 + -0.4
940,286 - +0.1
940,291 - +0.2
940,304 - +1.3
940,346 + -2.8
940,346 + +1.8
940,347 - +1.0
940,458 - Echvi_0823 0.13 -0.4
940,519 - Echvi_0823 0.17 -1.8
940,538 + Echvi_0823 0.18 -0.7
940,539 - Echvi_0823 0.18 +0.5
940,539 - Echvi_0823 0.18 +0.6
940,541 + Echvi_0823 0.18 -0.0
940,541 + Echvi_0823 0.18 -0.8
940,542 - Echvi_0823 0.18 -2.2
940,542 - Echvi_0823 0.18 +1.0
940,542 - Echvi_0823 0.18 -3.5
940,610 + Echvi_0823 0.22 -2.7
940,611 - Echvi_0823 0.22 +0.7
940,619 + Echvi_0823 0.23 -1.7
940,620 - Echvi_0823 0.23 +0.8
940,620 - Echvi_0823 0.23 -1.4
940,671 - Echvi_0823 0.26 +0.2
940,672 + Echvi_0823 0.26 -1.7
940,673 - Echvi_0823 0.26 -2.1
940,727 - Echvi_0823 0.29 -0.2
940,795 - Echvi_0823 0.33 -1.0
940,840 - Echvi_0823 0.35 -1.5
940,840 - Echvi_0823 0.35 +0.6
940,840 - Echvi_0823 0.35 +0.0
940,866 - Echvi_0823 0.37 -0.7
940,866 - Echvi_0823 0.37 -2.0
940,887 + Echvi_0823 0.38 +0.0
940,887 + Echvi_0823 0.38 -2.0
940,888 - Echvi_0823 0.38 -1.8
940,888 - Echvi_0823 0.38 -0.7
940,900 + Echvi_0823 0.39 -1.7
940,971 + Echvi_0823 0.43 -0.4
940,971 + Echvi_0823 0.43 +0.9
940,971 + Echvi_0823 0.43 +0.4
940,984 - Echvi_0823 0.44 -1.1
941,044 + Echvi_0823 0.47 -0.6
941,045 - Echvi_0823 0.47 +0.4
941,045 - Echvi_0823 0.47 +0.0
941,045 - Echvi_0823 0.47 +1.0
941,045 - Echvi_0823 0.47 +0.0
941,045 - Echvi_0823 0.47 -1.2
941,045 - Echvi_0823 0.47 -1.0
941,045 - Echvi_0823 0.47 -0.3
941,045 - Echvi_0823 0.47 -1.6
941,054 + Echvi_0823 0.48 +1.0
941,204 + Echvi_0823 0.56 -0.7
941,205 - Echvi_0823 0.56 -1.3
941,212 + Echvi_0823 0.57 -0.7
941,212 + Echvi_0823 0.57 -1.4
941,213 - Echvi_0823 0.57 +0.5
941,217 + Echvi_0823 0.57 +2.2
941,218 - Echvi_0823 0.57 -1.4
941,314 + Echvi_0823 0.63 -1.7
941,317 + Echvi_0823 0.63 -0.0
941,346 + Echvi_0823 0.65 +0.1
941,347 - Echvi_0823 0.65 +0.2
941,347 - Echvi_0823 0.65 +0.2
941,433 - Echvi_0823 0.70 +0.2
941,538 + Echvi_0823 0.76 -0.2
941,597 + Echvi_0823 0.79 -1.4
941,624 + Echvi_0823 0.81 -0.3
941,624 + Echvi_0823 0.81 -2.2
941,625 - Echvi_0823 0.81 +0.9
941,625 - Echvi_0823 0.81 -0.8
941,625 - Echvi_0823 0.81 +1.3
941,625 - Echvi_0823 0.81 +0.7
941,625 - Echvi_0823 0.81 +2.9
941,655 + Echvi_0823 0.83 +0.3
941,657 + Echvi_0823 0.83 -0.4
941,657 + +1.2
941,657 + Echvi_0823 0.83 -2.2
941,657 + Echvi_0823 0.83 -0.7
941,658 - Echvi_0823 0.83 -0.8
941,658 - Echvi_0823 0.83 +0.8
941,658 - Echvi_0823 0.83 -0.9
941,658 - Echvi_0823 0.83 -1.3
941,658 - Echvi_0823 0.83 -0.3
941,670 + Echvi_0823 0.83 -0.2
941,723 + Echvi_0823 0.86 -0.2
941,724 - Echvi_0823 0.87 +1.0
941,724 - Echvi_0823 0.87 -0.5
941,724 - Echvi_0823 0.87 -0.2
941,724 - Echvi_0823 0.87 -1.2
941,726 - Echvi_0823 0.87 +0.4
941,726 - Echvi_0823 0.87 +0.1
941,828 + -2.0
941,829 - -0.4
941,912 - +0.0
941,955 - -0.2
941,955 - +0.9
941,960 + +3.2
941,961 - -0.2
941,961 - +0.6
941,974 - +0.9
942,064 - Echvi_0824 0.10 -0.4
942,256 + Echvi_0824 0.30 +0.5
942,256 + Echvi_0824 0.30 +0.8
942,262 - Echvi_0824 0.31 +0.5
942,267 - Echvi_0824 0.31 +0.5
942,267 - Echvi_0824 0.31 +1.2
942,273 + Echvi_0824 0.32 -1.2
942,356 + Echvi_0824 0.41 +0.9
942,357 - Echvi_0824 0.41 +0.5
942,453 + Echvi_0824 0.51 -0.4
942,453 + Echvi_0824 0.51 -2.2
942,453 + Echvi_0824 0.51 -0.9
942,566 + Echvi_0824 0.63 -0.6
942,581 - Echvi_0824 0.64 -0.2
942,623 + Echvi_0824 0.69 -0.6
942,624 - Echvi_0824 0.69 -0.1
942,624 - Echvi_0824 0.69 +1.0
942,624 - Echvi_0824 0.69 +0.3
942,624 - Echvi_0824 0.69 +0.5
942,677 + Echvi_0824 0.74 +0.4
942,678 - Echvi_0824 0.74 -1.3
942,678 - Echvi_0824 0.74 -0.5
942,683 + Echvi_0824 0.75 +0.4
942,779 + Echvi_0824 0.85 -0.7
942,780 - Echvi_0824 0.85 -0.5
942,780 - Echvi_0824 0.85 -0.7
942,780 - Echvi_0824 0.85 -1.1
942,783 + Echvi_0824 0.85 -0.8
942,784 - Echvi_0824 0.85 -0.4
942,784 - Echvi_0824 0.85 +1.5
942,852 - +0.2

Or see this region's nucleotide sequence