Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0675

Experiment: L-Lysine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0674 and Echvi_0675 are separated by 206 nucleotidesEchvi_0675 and Echvi_0676 are separated by 165 nucleotidesEchvi_0676 and Echvi_0677 overlap by 4 nucleotides Echvi_0674: Echvi_0674 - hypothetical protein, at 756,000 to 756,863 _0674 Echvi_0675: Echvi_0675 - Aspartate/tyrosine/aromatic aminotransferase, at 757,070 to 758,272 _0675 Echvi_0676: Echvi_0676 - Predicted glycosyltransferases, at 758,438 to 759,148 _0676 Echvi_0677: Echvi_0677 - Glycosyltransferases involved in cell wall biogenesis, at 759,145 to 759,939 _0677 Position (kb) 757 758 759Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 756.111 kb on + strand, within Echvi_0674at 756.131 kb on + strand, within Echvi_0674at 756.176 kb on - strand, within Echvi_0674at 756.218 kb on - strand, within Echvi_0674at 756.233 kb on + strand, within Echvi_0674at 756.241 kb on + strand, within Echvi_0674at 756.241 kb on + strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.262 kb on + strand, within Echvi_0674at 756.281 kb on + strand, within Echvi_0674at 756.282 kb on - strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.290 kb on - strand, within Echvi_0674at 756.322 kb on + strand, within Echvi_0674at 756.322 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.339 kb on + strand, within Echvi_0674at 756.340 kb on - strand, within Echvi_0674at 756.394 kb on + strand, within Echvi_0674at 756.395 kb on - strand, within Echvi_0674at 756.395 kb on - strand, within Echvi_0674at 756.428 kb on + strand, within Echvi_0674at 756.429 kb on - strand, within Echvi_0674at 756.429 kb on - strand, within Echvi_0674at 756.439 kb on + strand, within Echvi_0674at 756.439 kb on + strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674at 756.458 kb on - strand, within Echvi_0674at 756.517 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.533 kb on - strand, within Echvi_0674at 756.533 kb on - strand, within Echvi_0674at 756.533 kb on - strand, within Echvi_0674at 756.551 kb on + strand, within Echvi_0674at 756.560 kb on + strand, within Echvi_0674at 756.561 kb on - strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.641 kb on + strand, within Echvi_0674at 756.641 kb on + strand, within Echvi_0674at 756.641 kb on + strand, within Echvi_0674at 756.642 kb on - strand, within Echvi_0674at 756.642 kb on - strand, within Echvi_0674at 756.722 kb on + strand, within Echvi_0674at 756.723 kb on - strand, within Echvi_0674at 756.826 kb on - strandat 756.834 kb on + strandat 756.835 kb on - strandat 756.844 kb on + strandat 756.864 kb on - strandat 756.871 kb on - strandat 756.901 kb on - strandat 756.914 kb on + strandat 756.922 kb on - strandat 756.925 kb on + strandat 756.926 kb on - strandat 756.953 kb on + strandat 756.953 kb on + strandat 756.954 kb on - strandat 756.954 kb on - strandat 756.954 kb on - strandat 756.995 kb on - strandat 757.032 kb on - strandat 757.050 kb on + strandat 757.051 kb on - strandat 757.062 kb on + strandat 758.266 kb on + strandat 758.266 kb on + strandat 758.267 kb on - strandat 758.267 kb on - strandat 758.267 kb on - strandat 758.267 kb on - strandat 758.299 kb on + strandat 758.304 kb on - strandat 758.376 kb on + strandat 758.454 kb on + strandat 758.455 kb on - strandat 758.455 kb on - strandat 758.458 kb on + strandat 758.459 kb on - strandat 758.459 kb on - strandat 758.459 kb on - strandat 758.518 kb on + strand, within Echvi_0676at 758.607 kb on - strand, within Echvi_0676at 758.719 kb on - strand, within Echvi_0676at 758.730 kb on + strand, within Echvi_0676at 758.730 kb on + strand, within Echvi_0676at 758.800 kb on - strand, within Echvi_0676at 758.800 kb on - strand, within Echvi_0676at 758.814 kb on + strand, within Echvi_0676at 758.819 kb on + strand, within Echvi_0676at 758.819 kb on + strand, within Echvi_0676at 758.848 kb on + strand, within Echvi_0676at 758.939 kb on + strand, within Echvi_0676at 758.939 kb on + strand, within Echvi_0676at 758.947 kb on + strand, within Echvi_0676at 758.947 kb on + strand, within Echvi_0676at 758.947 kb on + strand, within Echvi_0676at 758.948 kb on - strand, within Echvi_0676at 758.975 kb on + strand, within Echvi_0676at 758.986 kb on + strand, within Echvi_0676at 758.986 kb on + strand, within Echvi_0676at 759.090 kb on - strandat 759.107 kb on + strandat 759.110 kb on + strandat 759.151 kb on + strandat 759.151 kb on + strandat 759.152 kb on - strandat 759.166 kb on + strandat 759.166 kb on + strandat 759.178 kb on - strandat 759.178 kb on - strandat 759.179 kb on + strandat 759.180 kb on - strandat 759.208 kb on + strandat 759.259 kb on - strand, within Echvi_0677

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
remove
756,111 + Echvi_0674 0.13 -0.4
756,131 + Echvi_0674 0.15 +0.4
756,176 - Echvi_0674 0.20 +0.6
756,218 - Echvi_0674 0.25 -0.1
756,233 + Echvi_0674 0.27 -0.3
756,241 + Echvi_0674 0.28 -0.2
756,241 + Echvi_0674 0.28 -0.6
756,242 - Echvi_0674 0.28 +0.1
756,242 - Echvi_0674 0.28 -0.1
756,242 - Echvi_0674 0.28 -0.3
756,242 - Echvi_0674 0.28 +0.6
756,242 - Echvi_0674 0.28 -0.4
756,242 - Echvi_0674 0.28 +0.8
756,262 + Echvi_0674 0.30 -0.4
756,281 + Echvi_0674 0.33 +0.1
756,282 - Echvi_0674 0.33 -0.2
756,286 + Echvi_0674 0.33 +0.3
756,286 + Echvi_0674 0.33 +0.1
756,286 + Echvi_0674 0.33 -0.2
756,287 - Echvi_0674 0.33 -1.5
756,287 - Echvi_0674 0.33 -1.2
756,287 - Echvi_0674 0.33 -0.1
756,287 - Echvi_0674 0.33 +0.3
756,289 + Echvi_0674 0.33 +0.1
756,289 + Echvi_0674 0.33 +0.2
756,289 + Echvi_0674 0.33 -0.2
756,289 + Echvi_0674 0.33 -1.7
756,289 + Echvi_0674 0.33 -1.0
756,290 - Echvi_0674 0.34 +0.1
756,322 + Echvi_0674 0.37 +0.1
756,322 + Echvi_0674 0.37 -0.2
756,325 + Echvi_0674 0.38 -0.5
756,325 + Echvi_0674 0.38 +0.2
756,325 + Echvi_0674 0.38 -0.0
756,326 - Echvi_0674 0.38 +0.4
756,326 - Echvi_0674 0.38 +0.4
756,326 - Echvi_0674 0.38 -1.4
756,326 - Echvi_0674 0.38 -0.1
756,339 + Echvi_0674 0.39 +2.1
756,340 - Echvi_0674 0.39 -0.3
756,394 + Echvi_0674 0.46 -0.9
756,395 - Echvi_0674 0.46 +0.5
756,395 - Echvi_0674 0.46 -0.7
756,428 + Echvi_0674 0.50 +0.7
756,429 - Echvi_0674 0.50 +0.2
756,429 - Echvi_0674 0.50 -0.0
756,439 + Echvi_0674 0.51 -0.3
756,439 + Echvi_0674 0.51 -0.5
756,440 - Echvi_0674 0.51 -0.2
756,440 - Echvi_0674 0.51 +1.0
756,440 - Echvi_0674 0.51 +0.1
756,458 - Echvi_0674 0.53 +0.2
756,517 + Echvi_0674 0.60 -0.1
756,532 + Echvi_0674 0.62 -0.4
756,532 + Echvi_0674 0.62 +0.2
756,532 + Echvi_0674 0.62 -0.1
756,532 + Echvi_0674 0.62 -0.3
756,533 - Echvi_0674 0.62 +2.3
756,533 - Echvi_0674 0.62 +0.6
756,533 - Echvi_0674 0.62 -0.1
756,551 + Echvi_0674 0.64 +0.5
756,560 + Echvi_0674 0.65 +1.1
756,561 - Echvi_0674 0.65 -1.3
756,637 + Echvi_0674 0.74 -0.5
756,637 + Echvi_0674 0.74 +0.0
756,637 + Echvi_0674 0.74 +0.3
756,637 + Echvi_0674 0.74 -0.4
756,637 + Echvi_0674 0.74 -2.5
756,638 - Echvi_0674 0.74 +0.6
756,638 - Echvi_0674 0.74 -0.4
756,638 - Echvi_0674 0.74 +1.0
756,638 - Echvi_0674 0.74 -0.0
756,641 + Echvi_0674 0.74 +0.7
756,641 + Echvi_0674 0.74 -0.0
756,641 + Echvi_0674 0.74 +0.4
756,642 - Echvi_0674 0.74 +0.0
756,642 - Echvi_0674 0.74 +0.2
756,722 + Echvi_0674 0.84 -0.2
756,723 - Echvi_0674 0.84 -0.7
756,826 - +0.6
756,834 + -0.1
756,835 - -0.3
756,844 + +1.0
756,864 - -1.9
756,871 - +1.3
756,901 - -0.7
756,914 + -0.5
756,922 - -2.2
756,925 + -0.8
756,926 - -0.8
756,953 + -1.5
756,953 + -1.0
756,954 - -2.3
756,954 - -2.4
756,954 - -3.7
756,995 - -4.9
757,032 - -2.8
757,050 + +3.1
757,051 - -1.7
757,062 + -4.0
758,266 + -0.2
758,266 + +0.3
758,267 - -1.8
758,267 - -2.9
758,267 - -0.2
758,267 - -1.9
758,299 + -3.0
758,304 - -1.0
758,376 + +1.1
758,454 + -1.6
758,455 - -1.1
758,455 - -1.9
758,458 + -2.7
758,459 - -2.7
758,459 - -1.1
758,459 - -2.0
758,518 + Echvi_0676 0.11 -3.0
758,607 - Echvi_0676 0.24 -2.3
758,719 - Echvi_0676 0.40 -0.9
758,730 + Echvi_0676 0.41 -3.9
758,730 + Echvi_0676 0.41 -1.6
758,800 - Echvi_0676 0.51 -1.7
758,800 - Echvi_0676 0.51 -2.4
758,814 + Echvi_0676 0.53 +0.1
758,819 + Echvi_0676 0.54 -1.9
758,819 + Echvi_0676 0.54 -1.1
758,848 + Echvi_0676 0.58 -1.3
758,939 + Echvi_0676 0.70 -4.2
758,939 + Echvi_0676 0.70 -2.7
758,947 + Echvi_0676 0.72 -1.2
758,947 + Echvi_0676 0.72 -4.8
758,947 + Echvi_0676 0.72 -3.0
758,948 - Echvi_0676 0.72 -4.3
758,975 + Echvi_0676 0.76 -2.8
758,986 + Echvi_0676 0.77 -1.9
758,986 + Echvi_0676 0.77 -1.4
759,090 - -1.8
759,107 + -4.0
759,110 + -5.0
759,151 + +0.6
759,151 + +0.6
759,152 - -0.9
759,166 + -0.6
759,166 + -1.9
759,178 - +0.1
759,178 - -1.6
759,179 + +0.0
759,180 - +0.1
759,208 + +0.5
759,259 - Echvi_0677 0.14 -1.8

Or see this region's nucleotide sequence