Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0662 and Echvi_0663 are separated by 143 nucleotides Echvi_0663 and Echvi_0664 are separated by 104 nucleotides Echvi_0664 and Echvi_0665 are separated by 46 nucleotides
Echvi_0662: Echvi_0662 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 745,351 to 746,112
_0662
Echvi_0663: Echvi_0663 - Predicted methyltransferases, at 746,256 to 746,969
_0663
Echvi_0664: Echvi_0664 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 747,074 to 747,772
_0664
Echvi_0665: Echvi_0665 - FOG: Transposase and inactivated derivatives, at 747,819 to 749,051
_0665
Position (kb) 747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 746.208 kb on - strand at 746.274 kb on + strand at 746.274 kb on + strand at 746.361 kb on + strand, within Echvi_0663 at 746.362 kb on - strand, within Echvi_0663 at 746.397 kb on - strand, within Echvi_0663 at 746.454 kb on - strand, within Echvi_0663 at 746.723 kb on + strand, within Echvi_0663 at 746.723 kb on + strand, within Echvi_0663 at 746.723 kb on + strand, within Echvi_0663 at 746.991 kb on - strand at 747.003 kb on + strand at 747.003 kb on + strand at 747.004 kb on - strand at 747.007 kb on + strand at 747.007 kb on + strand at 747.008 kb on - strand at 747.008 kb on - strand at 747.051 kb on + strand at 747.157 kb on + strand, within Echvi_0664 at 747.159 kb on + strand, within Echvi_0664 at 747.160 kb on - strand, within Echvi_0664 at 747.160 kb on - strand, within Echvi_0664 at 747.210 kb on + strand, within Echvi_0664 at 747.210 kb on + strand, within Echvi_0664 at 747.211 kb on - strand, within Echvi_0664 at 747.211 kb on - strand, within Echvi_0664 at 747.234 kb on + strand, within Echvi_0664 at 747.234 kb on + strand, within Echvi_0664 at 747.235 kb on - strand, within Echvi_0664 at 747.235 kb on - strand, within Echvi_0664 at 747.289 kb on + strand, within Echvi_0664 at 747.427 kb on + strand, within Echvi_0664 at 747.427 kb on + strand, within Echvi_0664 at 747.427 kb on + strand, within Echvi_0664 at 747.427 kb on + strand, within Echvi_0664 at 747.428 kb on - strand, within Echvi_0664 at 747.428 kb on - strand, within Echvi_0664 at 747.450 kb on + strand, within Echvi_0664 at 747.451 kb on - strand, within Echvi_0664 at 747.537 kb on + strand, within Echvi_0664 at 747.538 kb on - strand, within Echvi_0664 at 747.613 kb on - strand, within Echvi_0664 at 747.613 kb on - strand, within Echvi_0664 at 747.613 kb on - strand, within Echvi_0664 at 747.659 kb on + strand, within Echvi_0664 at 747.659 kb on + strand, within Echvi_0664 at 747.671 kb on + strand, within Echvi_0664 at 747.671 kb on + strand, within Echvi_0664 at 747.728 kb on + strand at 747.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 746,208 - +0.5 746,274 + +0.5 746,274 + +0.7 746,361 + Echvi_0663 0.15 +0.1 746,362 - Echvi_0663 0.15 +1.8 746,397 - Echvi_0663 0.20 +0.6 746,454 - Echvi_0663 0.28 +0.5 746,723 + Echvi_0663 0.65 +0.5 746,723 + Echvi_0663 0.65 +0.3 746,723 + Echvi_0663 0.65 -1.7 746,991 - +0.2 747,003 + -1.7 747,003 + -0.7 747,004 - +1.2 747,007 + -3.7 747,007 + -0.4 747,008 - -1.8 747,008 - -1.0 747,051 + -2.0 747,157 + Echvi_0664 0.12 -0.5 747,159 + Echvi_0664 0.12 +1.1 747,160 - Echvi_0664 0.12 -0.1 747,160 - Echvi_0664 0.12 -1.2 747,210 + Echvi_0664 0.19 +0.2 747,210 + Echvi_0664 0.19 -0.3 747,211 - Echvi_0664 0.20 -1.1 747,211 - Echvi_0664 0.20 -0.4 747,234 + Echvi_0664 0.23 +0.6 747,234 + Echvi_0664 0.23 -1.4 747,235 - Echvi_0664 0.23 -0.7 747,235 - Echvi_0664 0.23 +0.3 747,289 + Echvi_0664 0.31 +0.1 747,427 + Echvi_0664 0.51 -0.7 747,427 + Echvi_0664 0.51 +0.1 747,427 + Echvi_0664 0.51 -1.3 747,427 + Echvi_0664 0.51 -0.2 747,428 - Echvi_0664 0.51 -1.2 747,428 - Echvi_0664 0.51 -0.7 747,450 + Echvi_0664 0.54 +0.7 747,451 - Echvi_0664 0.54 -0.1 747,537 + Echvi_0664 0.66 -1.1 747,538 - Echvi_0664 0.66 -1.2 747,613 - Echvi_0664 0.77 -0.7 747,613 - Echvi_0664 0.77 -1.7 747,613 - Echvi_0664 0.77 -0.3 747,659 + Echvi_0664 0.84 -1.0 747,659 + Echvi_0664 0.84 -0.4 747,671 + Echvi_0664 0.85 -1.1 747,671 + Echvi_0664 0.85 -1.4 747,728 + -0.3 747,729 - -0.6
Or see this region's nucleotide sequence