Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0583

Experiment: L-Lysine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0582 and Echvi_0583 are separated by 574 nucleotidesEchvi_0583 and Echvi_0584 are separated by 90 nucleotides Echvi_0582: Echvi_0582 - hypothetical protein, at 659,491 to 659,802 _0582 Echvi_0583: Echvi_0583 - Pseudouridylate synthases, 23S RNA-specific, at 660,377 to 661,111 _0583 Echvi_0584: Echvi_0584 - peptide chain release factor 3, at 661,202 to 662,815 _0584 Position (kb) 660 661 662Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 659.450 kb on - strandat 659.450 kb on - strandat 659.483 kb on - strandat 659.496 kb on + strandat 659.508 kb on + strandat 659.603 kb on - strand, within Echvi_0582at 659.626 kb on - strand, within Echvi_0582at 659.639 kb on + strand, within Echvi_0582at 659.640 kb on - strand, within Echvi_0582at 659.664 kb on - strand, within Echvi_0582at 659.664 kb on - strand, within Echvi_0582at 659.664 kb on - strand, within Echvi_0582at 659.727 kb on + strand, within Echvi_0582at 659.728 kb on - strand, within Echvi_0582at 659.812 kb on + strandat 659.840 kb on + strandat 659.864 kb on + strandat 659.884 kb on + strandat 659.951 kb on + strandat 659.952 kb on - strandat 660.060 kb on + strandat 660.093 kb on + strandat 660.093 kb on + strandat 660.096 kb on + strandat 660.097 kb on - strandat 660.221 kb on - strandat 660.334 kb on - strandat 660.334 kb on - strandat 660.385 kb on + strandat 660.391 kb on + strandat 660.419 kb on + strandat 660.420 kb on - strandat 660.438 kb on + strandat 660.480 kb on + strand, within Echvi_0583at 660.481 kb on - strand, within Echvi_0583at 660.570 kb on + strand, within Echvi_0583at 660.650 kb on + strand, within Echvi_0583at 660.693 kb on + strand, within Echvi_0583at 660.713 kb on - strand, within Echvi_0583at 660.735 kb on + strand, within Echvi_0583at 660.736 kb on - strand, within Echvi_0583at 660.736 kb on - strand, within Echvi_0583at 660.775 kb on - strand, within Echvi_0583at 660.829 kb on - strand, within Echvi_0583at 660.836 kb on - strand, within Echvi_0583at 660.854 kb on - strand, within Echvi_0583at 661.012 kb on + strand, within Echvi_0583at 661.083 kb on + strandat 661.084 kb on - strandat 661.084 kb on - strandat 661.084 kb on - strandat 661.085 kb on + strandat 661.086 kb on - strandat 661.086 kb on - strandat 661.086 kb on - strandat 661.086 kb on - strandat 661.165 kb on + strandat 661.196 kb on - strandat 661.196 kb on - strandat 661.217 kb on - strandat 661.294 kb on + strandat 661.294 kb on + strandat 661.294 kb on + strandat 661.294 kb on + strandat 661.295 kb on - strandat 661.304 kb on - strandat 661.308 kb on + strandat 661.308 kb on + strandat 661.385 kb on - strand, within Echvi_0584at 661.386 kb on + strand, within Echvi_0584at 661.386 kb on + strand, within Echvi_0584at 661.386 kb on + strand, within Echvi_0584at 661.386 kb on + strand, within Echvi_0584at 661.423 kb on - strand, within Echvi_0584at 661.507 kb on + strand, within Echvi_0584at 661.535 kb on + strand, within Echvi_0584at 661.582 kb on + strand, within Echvi_0584at 661.685 kb on - strand, within Echvi_0584at 661.690 kb on - strand, within Echvi_0584at 661.690 kb on - strand, within Echvi_0584at 661.690 kb on - strand, within Echvi_0584at 661.703 kb on - strand, within Echvi_0584at 661.800 kb on + strand, within Echvi_0584at 661.801 kb on - strand, within Echvi_0584at 661.873 kb on + strand, within Echvi_0584at 661.910 kb on - strand, within Echvi_0584at 661.997 kb on + strand, within Echvi_0584at 661.998 kb on - strand, within Echvi_0584at 662.055 kb on + strand, within Echvi_0584at 662.055 kb on + strand, within Echvi_0584at 662.055 kb on + strand, within Echvi_0584

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
remove
659,450 - +0.2
659,450 - -0.6
659,483 - -3.0
659,496 + -3.0
659,508 + -2.6
659,603 - Echvi_0582 0.36 -1.4
659,626 - Echvi_0582 0.43 -2.0
659,639 + Echvi_0582 0.47 -1.8
659,640 - Echvi_0582 0.48 -1.0
659,664 - Echvi_0582 0.55 -3.1
659,664 - Echvi_0582 0.55 -0.1
659,664 - Echvi_0582 0.55 -2.4
659,727 + Echvi_0582 0.76 +1.3
659,728 - Echvi_0582 0.76 -0.4
659,812 + -0.4
659,840 + -0.9
659,864 + +0.9
659,884 + -1.3
659,951 + -4.6
659,952 - +0.2
660,060 + +0.3
660,093 + -0.7
660,093 + -1.1
660,096 + +0.0
660,097 - -2.2
660,221 - -1.8
660,334 - -0.5
660,334 - -0.8
660,385 + +3.5
660,391 + +3.4
660,419 + +2.5
660,420 - -0.6
660,438 + +2.2
660,480 + Echvi_0583 0.14 +1.8
660,481 - Echvi_0583 0.14 +1.6
660,570 + Echvi_0583 0.26 +2.9
660,650 + Echvi_0583 0.37 +1.8
660,693 + Echvi_0583 0.43 +1.9
660,713 - Echvi_0583 0.46 +2.2
660,735 + Echvi_0583 0.49 +2.1
660,736 - Echvi_0583 0.49 +3.0
660,736 - Echvi_0583 0.49 +1.4
660,775 - Echvi_0583 0.54 +2.2
660,829 - Echvi_0583 0.61 +2.6
660,836 - Echvi_0583 0.62 +2.5
660,854 - Echvi_0583 0.65 +3.3
661,012 + Echvi_0583 0.86 +3.0
661,083 + +2.3
661,084 - +1.9
661,084 - +3.1
661,084 - +2.3
661,085 + +2.9
661,086 - +3.2
661,086 - +0.9
661,086 - +2.6
661,086 - +1.5
661,165 + +2.0
661,196 - -1.3
661,196 - -0.7
661,217 - +3.1
661,294 + +3.8
661,294 + +3.9
661,294 + +4.7
661,294 + +4.5
661,295 - +3.6
661,304 - +2.8
661,308 + +4.0
661,308 + +3.4
661,385 - Echvi_0584 0.11 +2.9
661,386 + Echvi_0584 0.11 +3.5
661,386 + Echvi_0584 0.11 +3.1
661,386 + Echvi_0584 0.11 +4.0
661,386 + Echvi_0584 0.11 +4.1
661,423 - Echvi_0584 0.14 +1.9
661,507 + Echvi_0584 0.19 +4.3
661,535 + Echvi_0584 0.21 +3.3
661,582 + Echvi_0584 0.24 +4.7
661,685 - Echvi_0584 0.30 +3.8
661,690 - Echvi_0584 0.30 +2.4
661,690 - Echvi_0584 0.30 +3.6
661,690 - Echvi_0584 0.30 +2.2
661,703 - Echvi_0584 0.31 +3.1
661,800 + Echvi_0584 0.37 +4.3
661,801 - Echvi_0584 0.37 +2.4
661,873 + Echvi_0584 0.42 +4.3
661,910 - Echvi_0584 0.44 +3.6
661,997 + Echvi_0584 0.49 +3.7
661,998 - Echvi_0584 0.49 +3.7
662,055 + Echvi_0584 0.53 +4.0
662,055 + Echvi_0584 0.53 +4.1
662,055 + Echvi_0584 0.53 +1.8

Or see this region's nucleotide sequence