Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0360 and Echvi_0361 are separated by 30 nucleotides Echvi_0361 and Echvi_0362 are separated by 297 nucleotides Echvi_0362 and Echvi_0363 are separated by 10 nucleotides
Echvi_0360: Echvi_0360 - hypothetical protein, at 387,368 to 388,405
_0360
Echvi_0361: Echvi_0361 - hypothetical protein, at 388,436 to 389,359
_0361
Echvi_0362: Echvi_0362 - hypothetical protein, at 389,657 to 390,136
_0362
Echvi_0363: Echvi_0363 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 390,147 to 391,259
_0363
Position (kb) 388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 387.608 kb on - strand, within Echvi_0360 at 388.193 kb on + strand, within Echvi_0360 at 388.456 kb on + strand at 388.456 kb on + strand at 388.459 kb on + strand at 388.459 kb on + strand at 388.459 kb on + strand at 388.460 kb on - strand at 388.543 kb on + strand, within Echvi_0361 at 388.543 kb on + strand, within Echvi_0361 at 388.617 kb on + strand, within Echvi_0361 at 388.618 kb on - strand, within Echvi_0361 at 388.742 kb on + strand, within Echvi_0361 at 388.742 kb on + strand, within Echvi_0361 at 388.742 kb on + strand, within Echvi_0361 at 388.742 kb on + strand, within Echvi_0361 at 388.742 kb on + strand, within Echvi_0361 at 388.742 kb on + strand, within Echvi_0361 at 388.742 kb on + strand, within Echvi_0361 at 388.743 kb on - strand, within Echvi_0361 at 388.746 kb on + strand, within Echvi_0361 at 388.747 kb on - strand, within Echvi_0361 at 388.747 kb on - strand, within Echvi_0361 at 388.747 kb on - strand, within Echvi_0361 at 388.754 kb on - strand, within Echvi_0361 at 388.820 kb on - strand, within Echvi_0361 at 388.840 kb on - strand, within Echvi_0361 at 389.049 kb on + strand, within Echvi_0361 at 389.050 kb on - strand, within Echvi_0361 at 389.054 kb on - strand, within Echvi_0361 at 389.101 kb on - strand, within Echvi_0361 at 389.131 kb on - strand, within Echvi_0361 at 389.170 kb on + strand, within Echvi_0361 at 389.222 kb on + strand, within Echvi_0361 at 389.223 kb on - strand, within Echvi_0361 at 389.223 kb on - strand, within Echvi_0361 at 389.224 kb on + strand, within Echvi_0361 at 389.224 kb on + strand, within Echvi_0361 at 389.224 kb on + strand, within Echvi_0361 at 389.224 kb on + strand, within Echvi_0361 at 389.225 kb on - strand, within Echvi_0361 at 389.225 kb on - strand, within Echvi_0361 at 389.312 kb on + strand at 389.314 kb on + strand at 389.314 kb on + strand at 389.315 kb on - strand at 389.315 kb on - strand at 389.315 kb on - strand at 389.315 kb on - strand at 389.358 kb on - strand at 389.388 kb on - strand at 389.418 kb on + strand at 389.465 kb on - strand at 389.564 kb on + strand at 389.575 kb on - strand at 389.685 kb on - strand at 389.695 kb on + strand at 389.695 kb on + strand at 389.708 kb on - strand, within Echvi_0362 at 389.717 kb on + strand, within Echvi_0362 at 389.828 kb on + strand, within Echvi_0362 at 389.942 kb on - strand, within Echvi_0362 at 389.952 kb on + strand, within Echvi_0362 at 389.952 kb on + strand, within Echvi_0362 at 389.953 kb on - strand, within Echvi_0362 at 389.966 kb on + strand, within Echvi_0362 at 390.046 kb on + strand, within Echvi_0362 at 390.107 kb on - strand at 390.155 kb on + strand at 390.179 kb on + strand at 390.179 kb on + strand at 390.184 kb on + strand at 390.206 kb on - strand at 390.206 kb on - strand at 390.313 kb on + strand, within Echvi_0363
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 387,608 - Echvi_0360 0.23 -0.7 388,193 + Echvi_0360 0.79 +0.6 388,456 + -3.0 388,456 + +0.3 388,459 + -1.6 388,459 + -1.3 388,459 + +1.5 388,460 - -1.0 388,543 + Echvi_0361 0.12 -0.6 388,543 + Echvi_0361 0.12 -1.2 388,617 + Echvi_0361 0.20 -0.4 388,618 - Echvi_0361 0.20 +0.7 388,742 + Echvi_0361 0.33 -1.1 388,742 + Echvi_0361 0.33 -1.2 388,742 + Echvi_0361 0.33 -1.7 388,742 + Echvi_0361 0.33 +1.3 388,742 + Echvi_0361 0.33 +0.6 388,742 + Echvi_0361 0.33 -1.7 388,742 + Echvi_0361 0.33 -1.4 388,743 - Echvi_0361 0.33 +0.2 388,746 + Echvi_0361 0.34 -0.7 388,747 - Echvi_0361 0.34 -0.8 388,747 - Echvi_0361 0.34 +0.3 388,747 - Echvi_0361 0.34 +0.1 388,754 - Echvi_0361 0.34 -0.1 388,820 - Echvi_0361 0.42 -1.7 388,840 - Echvi_0361 0.44 +0.0 389,049 + Echvi_0361 0.66 -3.4 389,050 - Echvi_0361 0.66 -0.1 389,054 - Echvi_0361 0.67 -2.8 389,101 - Echvi_0361 0.72 -2.1 389,131 - Echvi_0361 0.75 -1.0 389,170 + Echvi_0361 0.79 +0.3 389,222 + Echvi_0361 0.85 -0.5 389,223 - Echvi_0361 0.85 -0.4 389,223 - Echvi_0361 0.85 +0.3 389,224 + Echvi_0361 0.85 -0.2 389,224 + Echvi_0361 0.85 -0.2 389,224 + Echvi_0361 0.85 -0.5 389,224 + Echvi_0361 0.85 -2.1 389,225 - Echvi_0361 0.85 -0.7 389,225 - Echvi_0361 0.85 -2.0 389,312 + -2.7 389,314 + -0.7 389,314 + -1.1 389,315 - -0.7 389,315 - -1.3 389,315 - +0.8 389,315 - -0.6 389,358 - -0.5 389,388 - -0.3 389,418 + +0.3 389,465 - -0.0 389,564 + +0.8 389,575 - -1.3 389,685 - +0.2 389,695 + +0.7 389,695 + -0.1 389,708 - Echvi_0362 0.11 +0.2 389,717 + Echvi_0362 0.12 -0.3 389,828 + Echvi_0362 0.36 +0.9 389,942 - Echvi_0362 0.59 -0.8 389,952 + Echvi_0362 0.61 +0.2 389,952 + Echvi_0362 0.61 +0.2 389,953 - Echvi_0362 0.62 -1.0 389,966 + Echvi_0362 0.64 +2.0 390,046 + Echvi_0362 0.81 -0.8 390,107 - +0.8 390,155 + -2.4 390,179 + +0.2 390,179 + -2.2 390,184 + -1.1 390,206 - -1.0 390,206 - +0.5 390,313 + Echvi_0363 0.15 -2.5
Or see this region's nucleotide sequence