Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0356 and Echvi_0357 are separated by 53 nucleotides Echvi_0357 and Echvi_0358 are separated by 387 nucleotides Echvi_0358 and Echvi_0359 overlap by 8 nucleotides
Echvi_0356: Echvi_0356 - Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain, at 383,672 to 385,072
_0356
Echvi_0357: Echvi_0357 - hypothetical protein, at 385,126 to 385,608
_0357
Echvi_0358: Echvi_0358 - RNA polymerase sigma factor, sigma-70 family, at 385,996 to 386,565
_0358
Echvi_0359: Echvi_0359 - hypothetical protein, at 386,558 to 387,343
_0359
Position (kb) 385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 384.146 kb on + strand, within Echvi_0356 at 384.146 kb on + strand, within Echvi_0356 at 384.146 kb on + strand, within Echvi_0356 at 384.146 kb on + strand, within Echvi_0356 at 384.147 kb on - strand, within Echvi_0356 at 384.147 kb on - strand, within Echvi_0356 at 384.147 kb on - strand, within Echvi_0356 at 384.148 kb on + strand, within Echvi_0356 at 384.148 kb on + strand, within Echvi_0356 at 384.148 kb on + strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.161 kb on - strand, within Echvi_0356 at 384.247 kb on + strand, within Echvi_0356 at 384.380 kb on + strand, within Echvi_0356 at 384.444 kb on - strand, within Echvi_0356 at 384.444 kb on - strand, within Echvi_0356 at 384.444 kb on - strand, within Echvi_0356 at 384.446 kb on + strand, within Echvi_0356 at 384.447 kb on - strand, within Echvi_0356 at 384.447 kb on - strand, within Echvi_0356 at 384.495 kb on - strand, within Echvi_0356 at 384.495 kb on - strand, within Echvi_0356 at 384.620 kb on + strand, within Echvi_0356 at 384.620 kb on + strand, within Echvi_0356 at 384.674 kb on - strand, within Echvi_0356 at 384.725 kb on + strand, within Echvi_0356 at 384.725 kb on + strand, within Echvi_0356 at 384.726 kb on - strand, within Echvi_0356 at 384.727 kb on + strand, within Echvi_0356 at 384.802 kb on - strand, within Echvi_0356 at 384.831 kb on - strand, within Echvi_0356 at 384.838 kb on - strand, within Echvi_0356 at 384.866 kb on + strand, within Echvi_0356 at 384.867 kb on - strand, within Echvi_0356 at 384.868 kb on + strand, within Echvi_0356 at 384.868 kb on + strand, within Echvi_0356 at 384.869 kb on - strand at 384.925 kb on + strand, within Echvi_0356 at 384.925 kb on + strand, within Echvi_0356 at 384.945 kb on + strand at 385.021 kb on + strand at 385.021 kb on + strand at 385.190 kb on + strand, within Echvi_0357 at 385.191 kb on - strand, within Echvi_0357 at 385.356 kb on + strand, within Echvi_0357 at 385.357 kb on - strand, within Echvi_0357 at 385.516 kb on + strand, within Echvi_0357 at 385.516 kb on + strand, within Echvi_0357 at 385.517 kb on - strand, within Echvi_0357 at 385.517 kb on - strand, within Echvi_0357 at 385.517 kb on - strand, within Echvi_0357 at 385.517 kb on - strand, within Echvi_0357 at 385.517 kb on - strand, within Echvi_0357 at 385.531 kb on + strand, within Echvi_0357 at 385.533 kb on + strand, within Echvi_0357 at 385.533 kb on + strand, within Echvi_0357 at 385.592 kb on - strand at 385.603 kb on + strand at 385.614 kb on + strand at 385.627 kb on - strand at 385.657 kb on + strand at 385.660 kb on + strand at 385.660 kb on + strand at 385.660 kb on + strand at 385.661 kb on - strand at 385.661 kb on - strand at 385.688 kb on - strand at 385.691 kb on - strand at 385.724 kb on + strand at 385.768 kb on - strand at 385.831 kb on + strand at 385.832 kb on - strand at 385.900 kb on + strand at 385.900 kb on + strand at 385.900 kb on + strand at 385.901 kb on - strand at 385.901 kb on - strand at 385.904 kb on + strand at 385.904 kb on + strand at 385.904 kb on + strand at 385.905 kb on - strand at 385.909 kb on + strand at 385.910 kb on - strand at 386.036 kb on + strand at 386.036 kb on + strand at 386.037 kb on - strand at 386.080 kb on + strand, within Echvi_0358 at 386.081 kb on - strand, within Echvi_0358 at 386.081 kb on - strand, within Echvi_0358 at 386.111 kb on + strand, within Echvi_0358 at 386.111 kb on + strand, within Echvi_0358 at 386.111 kb on + strand, within Echvi_0358 at 386.123 kb on - strand, within Echvi_0358 at 386.123 kb on - strand, within Echvi_0358 at 386.125 kb on - strand, within Echvi_0358 at 386.197 kb on + strand, within Echvi_0358 at 386.294 kb on + strand, within Echvi_0358 at 386.333 kb on - strand, within Echvi_0358 at 386.417 kb on - strand, within Echvi_0358 at 386.417 kb on - strand, within Echvi_0358 at 386.417 kb on - strand, within Echvi_0358 at 386.432 kb on - strand, within Echvi_0358 at 386.513 kb on + strand at 386.514 kb on - strand at 386.514 kb on - strand at 386.535 kb on - strand at 386.535 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 384,146 + Echvi_0356 0.34 +1.7 384,146 + Echvi_0356 0.34 +0.8 384,146 + Echvi_0356 0.34 +0.7 384,146 + Echvi_0356 0.34 +0.6 384,147 - Echvi_0356 0.34 +0.8 384,147 - Echvi_0356 0.34 -0.8 384,147 - Echvi_0356 0.34 +0.4 384,148 + Echvi_0356 0.34 -2.5 384,148 + Echvi_0356 0.34 +2.2 384,148 + Echvi_0356 0.34 -1.0 384,149 - Echvi_0356 0.34 +1.6 384,149 - Echvi_0356 0.34 -0.5 384,149 - Echvi_0356 0.34 -0.1 384,149 - Echvi_0356 0.34 -1.5 384,149 - Echvi_0356 0.34 -0.8 384,161 - Echvi_0356 0.35 -0.8 384,247 + Echvi_0356 0.41 -0.4 384,380 + Echvi_0356 0.51 +0.3 384,444 - Echvi_0356 0.55 -0.7 384,444 - Echvi_0356 0.55 +0.7 384,444 - Echvi_0356 0.55 -0.6 384,446 + Echvi_0356 0.55 -0.2 384,447 - Echvi_0356 0.55 -0.6 384,447 - Echvi_0356 0.55 -0.8 384,495 - Echvi_0356 0.59 -0.6 384,495 - Echvi_0356 0.59 +0.3 384,620 + Echvi_0356 0.68 -0.0 384,620 + Echvi_0356 0.68 +0.1 384,674 - Echvi_0356 0.72 -0.1 384,725 + Echvi_0356 0.75 -0.8 384,725 + Echvi_0356 0.75 -0.2 384,726 - Echvi_0356 0.75 -1.0 384,727 + Echvi_0356 0.75 +0.2 384,802 - Echvi_0356 0.81 -0.8 384,831 - Echvi_0356 0.83 -2.5 384,838 - Echvi_0356 0.83 +0.8 384,866 + Echvi_0356 0.85 -0.3 384,867 - Echvi_0356 0.85 -0.7 384,868 + Echvi_0356 0.85 +0.2 384,868 + Echvi_0356 0.85 +1.7 384,869 - +1.4 384,925 + Echvi_0356 0.89 +0.5 384,925 + Echvi_0356 0.89 +0.3 384,945 + -1.4 385,021 + +0.2 385,021 + +0.3 385,190 + Echvi_0357 0.13 -1.2 385,191 - Echvi_0357 0.13 -2.0 385,356 + Echvi_0357 0.48 -0.8 385,357 - Echvi_0357 0.48 +0.8 385,516 + Echvi_0357 0.81 -1.4 385,516 + Echvi_0357 0.81 -0.9 385,517 - Echvi_0357 0.81 +1.5 385,517 - Echvi_0357 0.81 -1.7 385,517 - Echvi_0357 0.81 -0.4 385,517 - Echvi_0357 0.81 +0.1 385,517 - Echvi_0357 0.81 -0.7 385,531 + Echvi_0357 0.84 -0.1 385,533 + Echvi_0357 0.84 -1.4 385,533 + Echvi_0357 0.84 -1.9 385,592 - -0.8 385,603 + +0.2 385,614 + -0.7 385,627 - -1.0 385,657 + -1.7 385,660 + -0.8 385,660 + -0.5 385,660 + -2.3 385,661 - +0.8 385,661 - +0.5 385,688 - +0.9 385,691 - +1.3 385,724 + -1.2 385,768 - +0.4 385,831 + +0.9 385,832 - +0.2 385,900 + -2.2 385,900 + -2.0 385,900 + -0.9 385,901 - -0.5 385,901 - -2.5 385,904 + -0.2 385,904 + -0.7 385,904 + +0.3 385,905 - -1.2 385,909 + +0.2 385,910 - +0.8 386,036 + -0.1 386,036 + +1.7 386,037 - -2.1 386,080 + Echvi_0358 0.15 -1.7 386,081 - Echvi_0358 0.15 -0.3 386,081 - Echvi_0358 0.15 -2.8 386,111 + Echvi_0358 0.20 +0.6 386,111 + Echvi_0358 0.20 -0.7 386,111 + Echvi_0358 0.20 -0.8 386,123 - Echvi_0358 0.22 +1.2 386,123 - Echvi_0358 0.22 -2.4 386,125 - Echvi_0358 0.23 -1.7 386,197 + Echvi_0358 0.35 +0.4 386,294 + Echvi_0358 0.52 -0.7 386,333 - Echvi_0358 0.59 -1.3 386,417 - Echvi_0358 0.74 +0.2 386,417 - Echvi_0358 0.74 +0.4 386,417 - Echvi_0358 0.74 -0.1 386,432 - Echvi_0358 0.76 -1.0 386,513 + -1.2 386,514 - -1.3 386,514 - +0.4 386,535 - -2.1 386,535 - -1.2
Or see this region's nucleotide sequence