Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0206 and Echvi_0207 are separated by 906 nucleotides Echvi_0207 and Echvi_0208 are separated by 153 nucleotides Echvi_0208 and Echvi_0209 are separated by 14 nucleotides
Echvi_0206: Echvi_0206 - Transcriptional regulators of sugar metabolism, at 225,032 to 225,793
_0206
Echvi_0207: Echvi_0207 - Transposase DDE domain., at 226,700 to 227,596
_0207
Echvi_0208: Echvi_0208 - hypothetical protein, at 227,750 to 228,499
_0208
Echvi_0209: Echvi_0209 - hypothetical protein, at 228,514 to 229,602
_0209
Position (kb)
226
227
228 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 225.716 kb on + strand, within Echvi_0206 at 225.716 kb on + strand, within Echvi_0206 at 225.800 kb on - strand at 225.934 kb on + strand at 226.066 kb on + strand at 226.112 kb on + strand at 226.131 kb on + strand at 226.158 kb on - strand at 226.188 kb on - strand at 226.402 kb on + strand at 226.507 kb on + strand at 226.508 kb on - strand at 226.541 kb on + strand at 226.542 kb on - strand at 226.542 kb on - strand at 226.545 kb on + strand at 226.545 kb on + strand at 226.545 kb on + strand at 226.545 kb on + strand at 226.545 kb on + strand at 226.545 kb on + strand at 226.545 kb on + strand at 226.545 kb on + strand at 226.546 kb on - strand at 226.546 kb on - strand at 226.566 kb on - strand at 226.566 kb on - strand at 226.622 kb on + strand at 226.623 kb on - strand at 226.635 kb on - strand at 226.667 kb on - strand at 226.713 kb on - strand at 227.873 kb on + strand, within Echvi_0208 at 227.874 kb on - strand, within Echvi_0208 at 227.885 kb on + strand, within Echvi_0208 at 228.006 kb on - strand, within Echvi_0208 at 228.054 kb on + strand, within Echvi_0208 at 228.055 kb on - strand, within Echvi_0208 at 228.128 kb on - strand, within Echvi_0208 at 228.128 kb on - strand, within Echvi_0208 at 228.164 kb on + strand, within Echvi_0208 at 228.164 kb on + strand, within Echvi_0208 at 228.165 kb on - strand, within Echvi_0208 at 228.264 kb on + strand, within Echvi_0208 at 228.264 kb on + strand, within Echvi_0208 at 228.265 kb on - strand, within Echvi_0208 at 228.265 kb on - strand, within Echvi_0208 at 228.338 kb on + strand, within Echvi_0208 at 228.361 kb on + strand, within Echvi_0208 at 228.522 kb on - strand at 228.543 kb on + strand at 228.543 kb on + strand at 228.544 kb on - strand at 228.544 kb on - strand at 228.545 kb on + strand at 228.545 kb on + strand at 228.545 kb on + strand at 228.546 kb on - strand at 228.546 kb on - strand at 228.546 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 225,716 + Echvi_0206 0.90 -2.5 225,716 + Echvi_0206 0.90 -2.6 225,800 - +0.6 225,934 + +1.2 226,066 + +2.5 226,112 + +2.2 226,131 + +1.2 226,158 - -3.2 226,188 - -1.6 226,402 + +0.2 226,507 + +1.5 226,508 - -2.2 226,541 + +3.2 226,542 - -0.8 226,542 - -1.7 226,545 + -0.0 226,545 + +0.8 226,545 + -0.0 226,545 + +0.1 226,545 + +0.2 226,545 + +0.9 226,545 + +0.6 226,545 + -0.8 226,546 - -0.4 226,546 - -1.2 226,566 - -1.4 226,566 - -1.8 226,622 + +1.2 226,623 - -0.6 226,635 - -1.5 226,667 - -1.9 226,713 - -0.5 227,873 + Echvi_0208 0.16 +1.4 227,874 - Echvi_0208 0.17 -0.9 227,885 + Echvi_0208 0.18 +1.3 228,006 - Echvi_0208 0.34 +0.8 228,054 + Echvi_0208 0.41 -0.5 228,055 - Echvi_0208 0.41 -1.0 228,128 - Echvi_0208 0.50 -1.6 228,128 - Echvi_0208 0.50 -0.8 228,164 + Echvi_0208 0.55 +1.2 228,164 + Echvi_0208 0.55 -1.1 228,165 - Echvi_0208 0.55 -2.5 228,264 + Echvi_0208 0.69 -1.2 228,264 + Echvi_0208 0.69 +0.2 228,265 - Echvi_0208 0.69 -0.3 228,265 - Echvi_0208 0.69 -1.9 228,338 + Echvi_0208 0.78 -1.7 228,361 + Echvi_0208 0.81 -2.2 228,522 - -1.4 228,543 + +0.3 228,543 + +2.9 228,544 - -1.0 228,544 - +1.3 228,545 + +0.9 228,545 + +0.6 228,545 + +0.1 228,546 - +1.5 228,546 - -1.4 228,546 - +0.3
Or see this region's nucleotide sequence