Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0101

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0099 and Echvi_0100 are separated by 62 nucleotidesEchvi_0100 and Echvi_0101 are separated by 11 nucleotidesEchvi_0101 and Echvi_0102 are separated by 35 nucleotidesEchvi_0102 and Echvi_0103 are separated by 6 nucleotides Echvi_0099: Echvi_0099 - hypothetical protein, at 97,949 to 99,133 _0099 Echvi_0100: Echvi_0100 - NAD dependent epimerase/dehydratase family., at 99,196 to 99,915 _0100 Echvi_0101: Echvi_0101 - hypothetical protein, at 99,927 to 100,538 _0101 Echvi_0102: Echvi_0102 - Uncharacterized conserved protein, at 100,574 to 101,005 _0102 Echvi_0103: Echvi_0103 - hypothetical protein, at 101,012 to 101,533 _0103 Position (kb) 99 100 101Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 98.950 kb on - strand, within Echvi_0099at 99.032 kb on + strandat 99.060 kb on - strandat 99.068 kb on + strandat 99.226 kb on + strandat 99.227 kb on - strandat 99.227 kb on - strandat 99.227 kb on - strandat 99.236 kb on - strandat 99.256 kb on + strandat 99.306 kb on + strand, within Echvi_0100at 99.307 kb on - strand, within Echvi_0100at 99.308 kb on + strand, within Echvi_0100at 99.309 kb on - strand, within Echvi_0100at 99.309 kb on - strand, within Echvi_0100at 99.334 kb on - strand, within Echvi_0100at 99.479 kb on + strand, within Echvi_0100at 99.516 kb on + strand, within Echvi_0100at 99.517 kb on - strand, within Echvi_0100at 99.521 kb on + strand, within Echvi_0100at 99.521 kb on + strand, within Echvi_0100at 99.575 kb on + strand, within Echvi_0100at 99.575 kb on + strand, within Echvi_0100at 99.576 kb on - strand, within Echvi_0100at 99.586 kb on + strand, within Echvi_0100at 99.586 kb on + strand, within Echvi_0100at 99.586 kb on + strand, within Echvi_0100at 99.587 kb on - strand, within Echvi_0100at 99.635 kb on - strand, within Echvi_0100at 99.652 kb on + strand, within Echvi_0100at 99.674 kb on + strand, within Echvi_0100at 99.706 kb on + strand, within Echvi_0100at 99.707 kb on - strand, within Echvi_0100at 99.707 kb on - strand, within Echvi_0100at 99.707 kb on - strand, within Echvi_0100at 99.708 kb on + strand, within Echvi_0100at 99.793 kb on - strand, within Echvi_0100at 99.833 kb on + strand, within Echvi_0100at 99.834 kb on - strand, within Echvi_0100at 99.834 kb on - strand, within Echvi_0100at 99.874 kb on + strandat 99.875 kb on - strandat 99.916 kb on - strandat 99.947 kb on + strandat 99.948 kb on - strandat 99.948 kb on - strandat 99.974 kb on + strandat 99.975 kb on - strandat 99.986 kb on - strandat 100.128 kb on + strand, within Echvi_0101at 100.129 kb on - strand, within Echvi_0101at 100.194 kb on + strand, within Echvi_0101at 100.200 kb on - strand, within Echvi_0101at 100.212 kb on + strand, within Echvi_0101at 100.245 kb on - strand, within Echvi_0101at 100.247 kb on - strand, within Echvi_0101at 100.247 kb on - strand, within Echvi_0101at 100.254 kb on - strand, within Echvi_0101at 100.399 kb on + strand, within Echvi_0101at 100.399 kb on + strand, within Echvi_0101at 100.400 kb on - strand, within Echvi_0101at 100.400 kb on - strand, within Echvi_0101at 100.474 kb on + strand, within Echvi_0101at 100.540 kb on + strandat 100.540 kb on + strandat 100.582 kb on + strandat 100.730 kb on + strand, within Echvi_0102at 100.739 kb on + strand, within Echvi_0102at 100.753 kb on + strand, within Echvi_0102at 100.883 kb on + strand, within Echvi_0102at 100.892 kb on + strand, within Echvi_0102at 100.935 kb on + strand, within Echvi_0102at 100.951 kb on + strand, within Echvi_0102at 100.955 kb on + strand, within Echvi_0102at 101.021 kb on + strandat 101.021 kb on + strandat 101.060 kb on + strandat 101.122 kb on + strand, within Echvi_0103at 101.218 kb on - strand, within Echvi_0103at 101.237 kb on - strand, within Echvi_0103at 101.237 kb on - strand, within Echvi_0103at 101.295 kb on + strand, within Echvi_0103at 101.295 kb on + strand, within Echvi_0103at 101.306 kb on - strand, within Echvi_0103at 101.306 kb on - strand, within Echvi_0103at 101.309 kb on + strand, within Echvi_0103at 101.321 kb on + strand, within Echvi_0103at 101.321 kb on + strand, within Echvi_0103at 101.326 kb on + strand, within Echvi_0103at 101.336 kb on - strand, within Echvi_0103at 101.469 kb on + strand, within Echvi_0103at 101.469 kb on + strand, within Echvi_0103at 101.469 kb on + strand, within Echvi_0103at 101.470 kb on - strand, within Echvi_0103at 101.470 kb on - strand, within Echvi_0103at 101.470 kb on - strand, within Echvi_0103at 101.478 kb on + strand, within Echvi_0103at 101.536 kb on - strandat 101.538 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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98,950 - Echvi_0099 0.84 -0.8
99,032 + -0.8
99,060 - -3.0
99,068 + +0.4
99,226 + +0.2
99,227 - -1.8
99,227 - +0.9
99,227 - +0.1
99,236 - -0.3
99,256 + -2.0
99,306 + Echvi_0100 0.15 -0.6
99,307 - Echvi_0100 0.15 -1.6
99,308 + Echvi_0100 0.16 -1.6
99,309 - Echvi_0100 0.16 -0.2
99,309 - Echvi_0100 0.16 +1.3
99,334 - Echvi_0100 0.19 +1.6
99,479 + Echvi_0100 0.39 +1.4
99,516 + Echvi_0100 0.44 +2.3
99,517 - Echvi_0100 0.45 +0.5
99,521 + Echvi_0100 0.45 +1.6
99,521 + Echvi_0100 0.45 +0.9
99,575 + Echvi_0100 0.53 +2.6
99,575 + Echvi_0100 0.53 -1.2
99,576 - Echvi_0100 0.53 +1.9
99,586 + Echvi_0100 0.54 +0.3
99,586 + Echvi_0100 0.54 +1.2
99,586 + Echvi_0100 0.54 -0.3
99,587 - Echvi_0100 0.54 +1.8
99,635 - Echvi_0100 0.61 +0.7
99,652 + Echvi_0100 0.63 +0.1
99,674 + Echvi_0100 0.66 +0.7
99,706 + Echvi_0100 0.71 +0.1
99,707 - Echvi_0100 0.71 +1.6
99,707 - Echvi_0100 0.71 +0.2
99,707 - Echvi_0100 0.71 -1.7
99,708 + Echvi_0100 0.71 -0.2
99,793 - Echvi_0100 0.83 -1.5
99,833 + Echvi_0100 0.88 -0.1
99,834 - Echvi_0100 0.89 +1.1
99,834 - Echvi_0100 0.89 +0.5
99,874 + -0.3
99,875 - +1.1
99,916 - +0.3
99,947 + +0.9
99,948 - +0.2
99,948 - -0.8
99,974 + -0.8
99,975 - +1.4
99,986 - -2.0
100,128 + Echvi_0101 0.33 +1.2
100,129 - Echvi_0101 0.33 -0.4
100,194 + Echvi_0101 0.44 +0.5
100,200 - Echvi_0101 0.45 -1.5
100,212 + Echvi_0101 0.47 +0.1
100,245 - Echvi_0101 0.52 +0.7
100,247 - Echvi_0101 0.52 -0.9
100,247 - Echvi_0101 0.52 -0.6
100,254 - Echvi_0101 0.53 +0.1
100,399 + Echvi_0101 0.77 +0.7
100,399 + Echvi_0101 0.77 -0.4
100,400 - Echvi_0101 0.77 -0.3
100,400 - Echvi_0101 0.77 +0.1
100,474 + Echvi_0101 0.89 -0.5
100,540 + +0.1
100,540 + +0.4
100,582 + +0.5
100,730 + Echvi_0102 0.36 -2.5
100,739 + Echvi_0102 0.38 -0.5
100,753 + Echvi_0102 0.41 -2.2
100,883 + Echvi_0102 0.72 +1.4
100,892 + Echvi_0102 0.74 -0.4
100,935 + Echvi_0102 0.84 -0.2
100,951 + Echvi_0102 0.87 -1.6
100,955 + Echvi_0102 0.88 -1.3
101,021 + +0.8
101,021 + +0.6
101,060 + -1.9
101,122 + Echvi_0103 0.21 -1.2
101,218 - Echvi_0103 0.39 +4.0
101,237 - Echvi_0103 0.43 +3.0
101,237 - Echvi_0103 0.43 +3.5
101,295 + Echvi_0103 0.54 -1.8
101,295 + Echvi_0103 0.54 -1.4
101,306 - Echvi_0103 0.56 +4.0
101,306 - Echvi_0103 0.56 +2.6
101,309 + Echvi_0103 0.57 +2.2
101,321 + Echvi_0103 0.59 -2.4
101,321 + Echvi_0103 0.59 -1.3
101,326 + Echvi_0103 0.60 -1.0
101,336 - Echvi_0103 0.62 +3.2
101,469 + Echvi_0103 0.88 +0.7
101,469 + Echvi_0103 0.88 +0.2
101,469 + Echvi_0103 0.88 -0.7
101,470 - Echvi_0103 0.88 +2.2
101,470 - Echvi_0103 0.88 +2.7
101,470 - Echvi_0103 0.88 +2.6
101,478 + Echvi_0103 0.89 -0.3
101,536 - +2.8
101,538 + -0.7

Or see this region's nucleotide sequence