Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19985

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19980 and CA264_19985 are separated by 113 nucleotidesCA264_19985 and CA264_19990 are separated by 96 nucleotides CA264_19980: CA264_19980 - hypothetical protein, at 4,607,413 to 4,608,261 _19980 CA264_19985: CA264_19985 - NAD(P)-dependent oxidoreductase, at 4,608,375 to 4,609,250 _19985 CA264_19990: CA264_19990 - hypothetical protein, at 4,609,347 to 4,610,702 _19990 Position (kb) 4608 4609 4610Strain fitness (log2 ratio) -1 0 1 2at 4607.375 kb on + strandat 4607.376 kb on - strandat 4607.376 kb on - strandat 4607.376 kb on - strandat 4607.420 kb on - strandat 4607.426 kb on + strandat 4607.427 kb on - strandat 4607.437 kb on + strandat 4607.512 kb on - strand, within CA264_19980at 4607.552 kb on + strand, within CA264_19980at 4607.592 kb on + strand, within CA264_19980at 4607.592 kb on + strand, within CA264_19980at 4607.592 kb on + strand, within CA264_19980at 4607.593 kb on - strand, within CA264_19980at 4607.593 kb on - strand, within CA264_19980at 4607.725 kb on + strand, within CA264_19980at 4607.726 kb on - strand, within CA264_19980at 4607.731 kb on + strand, within CA264_19980at 4607.732 kb on - strand, within CA264_19980at 4607.732 kb on - strand, within CA264_19980at 4607.825 kb on - strand, within CA264_19980at 4607.918 kb on - strand, within CA264_19980at 4607.965 kb on - strand, within CA264_19980at 4607.965 kb on - strand, within CA264_19980at 4607.965 kb on - strand, within CA264_19980at 4608.003 kb on - strand, within CA264_19980at 4608.093 kb on - strand, within CA264_19980at 4608.143 kb on - strand, within CA264_19980at 4608.155 kb on + strand, within CA264_19980at 4608.155 kb on + strand, within CA264_19980at 4608.210 kb on + strandat 4608.271 kb on + strandat 4608.271 kb on + strandat 4608.284 kb on - strandat 4608.302 kb on - strandat 4608.304 kb on + strandat 4608.351 kb on + strandat 4608.353 kb on + strandat 4608.353 kb on + strandat 4608.353 kb on + strandat 4608.353 kb on + strandat 4608.354 kb on - strandat 4608.354 kb on - strandat 4608.354 kb on - strandat 4608.354 kb on - strandat 4608.354 kb on - strandat 4608.354 kb on - strandat 4608.357 kb on + strandat 4608.357 kb on + strandat 4608.358 kb on - strandat 4608.358 kb on - strandat 4608.358 kb on - strandat 4608.381 kb on - strandat 4608.381 kb on - strandat 4608.388 kb on + strandat 4608.389 kb on - strandat 4608.391 kb on + strandat 4608.392 kb on - strandat 4608.392 kb on - strandat 4608.392 kb on - strandat 4608.460 kb on + strandat 4608.460 kb on + strandat 4608.467 kb on - strand, within CA264_19985at 4608.478 kb on + strand, within CA264_19985at 4608.523 kb on + strand, within CA264_19985at 4608.625 kb on + strand, within CA264_19985at 4608.757 kb on - strand, within CA264_19985at 4608.776 kb on + strand, within CA264_19985at 4608.780 kb on + strand, within CA264_19985at 4608.816 kb on + strand, within CA264_19985at 4608.816 kb on + strand, within CA264_19985at 4608.817 kb on - strand, within CA264_19985at 4608.825 kb on + strand, within CA264_19985at 4608.825 kb on + strand, within CA264_19985at 4608.886 kb on + strand, within CA264_19985at 4608.887 kb on - strand, within CA264_19985at 4608.887 kb on - strand, within CA264_19985at 4608.891 kb on + strand, within CA264_19985at 4608.892 kb on - strand, within CA264_19985at 4608.892 kb on - strand, within CA264_19985at 4608.892 kb on - strand, within CA264_19985at 4608.896 kb on - strand, within CA264_19985at 4608.925 kb on + strand, within CA264_19985at 4608.963 kb on + strand, within CA264_19985at 4608.992 kb on + strand, within CA264_19985at 4608.993 kb on - strand, within CA264_19985at 4608.997 kb on - strand, within CA264_19985at 4609.046 kb on + strand, within CA264_19985at 4609.131 kb on + strand, within CA264_19985at 4609.272 kb on - strandat 4609.330 kb on + strandat 4609.330 kb on + strandat 4609.330 kb on + strandat 4609.330 kb on + strandat 4609.331 kb on - strandat 4609.335 kb on + strandat 4609.384 kb on + strandat 4609.465 kb on + strandat 4609.466 kb on - strandat 4609.466 kb on - strandat 4609.469 kb on - strandat 4609.469 kb on - strandat 4609.694 kb on + strand, within CA264_19990at 4609.805 kb on + strand, within CA264_19990at 4609.808 kb on + strand, within CA264_19990at 4609.808 kb on - strand, within CA264_19990at 4610.017 kb on + strand, within CA264_19990at 4610.018 kb on - strand, within CA264_19990at 4610.041 kb on + strand, within CA264_19990at 4610.042 kb on - strand, within CA264_19990at 4610.056 kb on + strand, within CA264_19990at 4610.056 kb on + strand, within CA264_19990at 4610.057 kb on - strand, within CA264_19990at 4610.120 kb on - strand, within CA264_19990at 4610.155 kb on + strand, within CA264_19990at 4610.155 kb on + strand, within CA264_19990at 4610.156 kb on - strand, within CA264_19990at 4610.239 kb on + strand, within CA264_19990at 4610.239 kb on + strand, within CA264_19990

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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4,607,375 + +0.3
4,607,376 - +0.1
4,607,376 - -0.5
4,607,376 - -0.9
4,607,420 - +0.8
4,607,426 + +0.1
4,607,427 - +0.1
4,607,437 + +0.1
4,607,512 - CA264_19980 0.12 -0.2
4,607,552 + CA264_19980 0.16 +0.4
4,607,592 + CA264_19980 0.21 +0.2
4,607,592 + CA264_19980 0.21 +0.6
4,607,592 + CA264_19980 0.21 -0.0
4,607,593 - CA264_19980 0.21 -0.9
4,607,593 - CA264_19980 0.21 -1.2
4,607,725 + CA264_19980 0.37 -0.1
4,607,726 - CA264_19980 0.37 -1.0
4,607,731 + CA264_19980 0.37 +0.5
4,607,732 - CA264_19980 0.38 -1.3
4,607,732 - CA264_19980 0.38 -0.7
4,607,825 - CA264_19980 0.49 +0.9
4,607,918 - CA264_19980 0.59 -0.4
4,607,965 - CA264_19980 0.65 -0.4
4,607,965 - CA264_19980 0.65 -0.4
4,607,965 - CA264_19980 0.65 +1.3
4,608,003 - CA264_19980 0.69 +0.3
4,608,093 - CA264_19980 0.80 +0.8
4,608,143 - CA264_19980 0.86 -0.2
4,608,155 + CA264_19980 0.87 -1.3
4,608,155 + CA264_19980 0.87 +0.0
4,608,210 + -0.2
4,608,271 + +1.1
4,608,271 + +0.8
4,608,284 - +0.3
4,608,302 - -1.0
4,608,304 + +0.4
4,608,351 + -0.7
4,608,353 + +0.6
4,608,353 + +0.3
4,608,353 + -1.2
4,608,353 + -0.0
4,608,354 - -0.4
4,608,354 - +0.6
4,608,354 - +0.4
4,608,354 - +0.4
4,608,354 - -0.2
4,608,354 - +0.2
4,608,357 + -0.8
4,608,357 + -0.3
4,608,358 - +0.2
4,608,358 - +0.1
4,608,358 - +0.4
4,608,381 - -1.0
4,608,381 - +0.1
4,608,388 + -0.6
4,608,389 - -0.3
4,608,391 + -1.0
4,608,392 - -0.7
4,608,392 - -1.0
4,608,392 - -0.6
4,608,460 + -0.9
4,608,460 + +0.4
4,608,467 - CA264_19985 0.11 +0.6
4,608,478 + CA264_19985 0.12 -0.2
4,608,523 + CA264_19985 0.17 +0.1
4,608,625 + CA264_19985 0.29 -0.2
4,608,757 - CA264_19985 0.44 +1.1
4,608,776 + CA264_19985 0.46 +0.2
4,608,780 + CA264_19985 0.46 +0.3
4,608,816 + CA264_19985 0.50 -0.8
4,608,816 + CA264_19985 0.50 +2.2
4,608,817 - CA264_19985 0.50 +0.2
4,608,825 + CA264_19985 0.51 +0.6
4,608,825 + CA264_19985 0.51 -0.2
4,608,886 + CA264_19985 0.58 +1.0
4,608,887 - CA264_19985 0.58 +0.5
4,608,887 - CA264_19985 0.58 +0.4
4,608,891 + CA264_19985 0.59 -1.4
4,608,892 - CA264_19985 0.59 +0.4
4,608,892 - CA264_19985 0.59 -0.1
4,608,892 - CA264_19985 0.59 -0.2
4,608,896 - CA264_19985 0.59 -0.4
4,608,925 + CA264_19985 0.63 +1.5
4,608,963 + CA264_19985 0.67 -0.7
4,608,992 + CA264_19985 0.70 -0.1
4,608,993 - CA264_19985 0.71 +1.9
4,608,997 - CA264_19985 0.71 +0.0
4,609,046 + CA264_19985 0.77 +0.1
4,609,131 + CA264_19985 0.86 -0.1
4,609,272 - -0.2
4,609,330 + -0.2
4,609,330 + -1.0
4,609,330 + -0.0
4,609,330 + +0.2
4,609,331 - -0.4
4,609,335 + +0.7
4,609,384 + -0.3
4,609,465 + -0.2
4,609,466 - -0.4
4,609,466 - +0.4
4,609,469 - -0.0
4,609,469 - -0.0
4,609,694 + CA264_19990 0.26 -0.3
4,609,805 + CA264_19990 0.34 -0.6
4,609,808 + CA264_19990 0.34 -0.6
4,609,808 - CA264_19990 0.34 -0.2
4,610,017 + CA264_19990 0.49 -0.8
4,610,018 - CA264_19990 0.49 -0.1
4,610,041 + CA264_19990 0.51 +0.0
4,610,042 - CA264_19990 0.51 -0.1
4,610,056 + CA264_19990 0.52 +1.3
4,610,056 + CA264_19990 0.52 -0.7
4,610,057 - CA264_19990 0.52 +0.1
4,610,120 - CA264_19990 0.57 -0.1
4,610,155 + CA264_19990 0.60 -0.1
4,610,155 + CA264_19990 0.60 -0.3
4,610,156 - CA264_19990 0.60 -0.9
4,610,239 + CA264_19990 0.66 +0.9
4,610,239 + CA264_19990 0.66 -0.2

Or see this region's nucleotide sequence