Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19215 and CA264_19220 are separated by 27 nucleotides CA264_19220 and CA264_19225 are separated by 6 nucleotides CA264_19225 and CA264_19230 overlap by 4 nucleotides CA264_19230 and CA264_19235 are separated by 141 nucleotides CA264_19235 and CA264_19240 are separated by 52 nucleotides
CA264_19215: CA264_19215 - RNA polymerase subunit sigma, at 4,464,406 to 4,464,999
_19215
CA264_19220: CA264_19220 - hypothetical protein, at 4,465,027 to 4,465,308
_19220
CA264_19225: CA264_19225 - guanylate kinase, at 4,465,315 to 4,465,899
_19225
CA264_19230: CA264_19230 - nicotinate-nicotinamide nucleotide adenylyltransferase, at 4,465,896 to 4,466,468
_19230
CA264_19235: CA264_19235 - ribosome-recycling factor, at 4,466,610 to 4,467,173
_19235
CA264_19240: CA264_19240 - UMP kinase, at 4,467,226 to 4,468,002
_19240
Position (kb) 4465
4466
4467 Strain fitness (log2 ratio) -1
0
1 at 4464.908 kb on + strand, within CA264_19215 at 4464.918 kb on - strand, within CA264_19215 at 4464.975 kb on + strand at 4464.976 kb on - strand at 4464.991 kb on - strand at 4465.023 kb on + strand at 4465.049 kb on + strand at 4465.097 kb on + strand, within CA264_19220 at 4465.109 kb on + strand, within CA264_19220 at 4465.110 kb on - strand, within CA264_19220 at 4465.167 kb on + strand, within CA264_19220 at 4465.264 kb on - strand, within CA264_19220 at 4465.305 kb on - strand at 4466.493 kb on + strand at 4466.515 kb on + strand at 4466.516 kb on - strand at 4466.516 kb on - strand at 4466.521 kb on - strand at 4466.579 kb on + strand at 4466.579 kb on + strand at 4466.603 kb on + strand at 4466.611 kb on + strand at 4467.185 kb on + strand at 4467.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 4,464,908 + CA264_19215 0.85 -0.3 4,464,918 - CA264_19215 0.86 +1.3 4,464,975 + -1.3 4,464,976 - +1.7 4,464,991 - +0.8 4,465,023 + +0.6 4,465,049 + -1.1 4,465,097 + CA264_19220 0.25 -0.1 4,465,109 + CA264_19220 0.29 +0.5 4,465,110 - CA264_19220 0.29 +0.0 4,465,167 + CA264_19220 0.50 +0.3 4,465,264 - CA264_19220 0.84 +0.4 4,465,305 - -0.0 4,466,493 + -0.3 4,466,515 + +0.9 4,466,516 - +1.3 4,466,516 - -0.2 4,466,521 - -0.8 4,466,579 + +0.2 4,466,579 + +0.4 4,466,603 + -1.5 4,466,611 + +1.0 4,467,185 + +0.4 4,467,186 - +0.5
Or see this region's nucleotide sequence