Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18890

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18885 and CA264_18890 are separated by 197 nucleotidesCA264_18890 and CA264_18895 are separated by 327 nucleotides CA264_18885: CA264_18885 - hypothetical protein, at 4,381,924 to 4,382,838 _18885 CA264_18890: CA264_18890 - aspartate-semialdehyde dehydrogenase, at 4,383,036 to 4,384,025 _18890 CA264_18895: CA264_18895 - hypothetical protein, at 4,384,353 to 4,386,938 _18895 Position (kb) 4383 4384 4385Strain fitness (log2 ratio) -1 0 1 2at 4382.149 kb on - strand, within CA264_18885at 4382.149 kb on - strand, within CA264_18885at 4382.158 kb on - strand, within CA264_18885at 4382.160 kb on - strand, within CA264_18885at 4382.176 kb on + strand, within CA264_18885at 4382.292 kb on + strand, within CA264_18885at 4382.370 kb on - strand, within CA264_18885at 4382.373 kb on + strand, within CA264_18885at 4382.373 kb on + strand, within CA264_18885at 4382.374 kb on - strand, within CA264_18885at 4382.374 kb on - strand, within CA264_18885at 4382.408 kb on - strand, within CA264_18885at 4382.408 kb on - strand, within CA264_18885at 4382.451 kb on - strand, within CA264_18885at 4382.451 kb on - strand, within CA264_18885at 4382.521 kb on - strand, within CA264_18885at 4382.548 kb on + strand, within CA264_18885at 4382.563 kb on - strand, within CA264_18885at 4382.585 kb on + strand, within CA264_18885at 4382.585 kb on + strand, within CA264_18885at 4382.585 kb on + strand, within CA264_18885at 4382.585 kb on + strand, within CA264_18885at 4382.585 kb on + strand, within CA264_18885at 4382.585 kb on + strand, within CA264_18885at 4382.586 kb on - strand, within CA264_18885at 4382.605 kb on + strand, within CA264_18885at 4382.606 kb on - strand, within CA264_18885at 4382.695 kb on + strand, within CA264_18885at 4382.734 kb on - strand, within CA264_18885at 4382.821 kb on - strandat 4382.827 kb on - strandat 4382.865 kb on + strandat 4382.871 kb on + strandat 4382.875 kb on - strandat 4382.875 kb on - strandat 4382.899 kb on - strandat 4382.903 kb on + strandat 4382.904 kb on - strandat 4382.904 kb on - strandat 4382.906 kb on - strandat 4382.907 kb on + strandat 4382.907 kb on + strandat 4382.908 kb on - strandat 4382.934 kb on - strandat 4382.947 kb on + strandat 4382.949 kb on + strandat 4383.037 kb on + strandat 4383.037 kb on + strandat 4384.039 kb on + strandat 4384.043 kb on + strandat 4384.043 kb on + strandat 4384.048 kb on - strandat 4384.048 kb on - strandat 4384.048 kb on - strandat 4384.050 kb on + strandat 4384.051 kb on - strandat 4384.348 kb on + strandat 4384.366 kb on + strandat 4384.366 kb on + strandat 4384.378 kb on + strandat 4384.378 kb on + strandat 4384.378 kb on + strandat 4384.567 kb on + strandat 4384.568 kb on - strandat 4384.568 kb on - strandat 4384.631 kb on + strand, within CA264_18895at 4384.635 kb on + strand, within CA264_18895at 4384.636 kb on - strand, within CA264_18895at 4384.717 kb on + strand, within CA264_18895at 4384.718 kb on - strand, within CA264_18895at 4384.718 kb on - strand, within CA264_18895at 4384.776 kb on - strand, within CA264_18895at 4384.793 kb on + strand, within CA264_18895at 4384.793 kb on + strand, within CA264_18895at 4384.793 kb on + strand, within CA264_18895at 4384.796 kb on + strand, within CA264_18895at 4384.797 kb on - strand, within CA264_18895at 4384.846 kb on + strand, within CA264_18895at 4384.847 kb on - strand, within CA264_18895at 4384.847 kb on - strand, within CA264_18895at 4384.850 kb on + strand, within CA264_18895at 4384.850 kb on + strand, within CA264_18895at 4384.850 kb on + strand, within CA264_18895at 4384.852 kb on + strand, within CA264_18895at 4384.852 kb on + strand, within CA264_18895at 4384.852 kb on + strand, within CA264_18895at 4384.852 kb on + strand, within CA264_18895at 4384.853 kb on - strand, within CA264_18895at 4384.853 kb on - strand, within CA264_18895at 4384.853 kb on - strand, within CA264_18895at 4384.856 kb on + strand, within CA264_18895at 4384.857 kb on - strand, within CA264_18895at 4384.857 kb on - strand, within CA264_18895at 4384.860 kb on - strand, within CA264_18895at 4384.860 kb on - strand, within CA264_18895at 4384.911 kb on + strand, within CA264_18895at 4384.937 kb on - strand, within CA264_18895at 4384.948 kb on - strand, within CA264_18895

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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4,382,149 - CA264_18885 0.25 +0.3
4,382,149 - CA264_18885 0.25 +1.5
4,382,158 - CA264_18885 0.26 -0.3
4,382,160 - CA264_18885 0.26 +0.4
4,382,176 + CA264_18885 0.28 +0.1
4,382,292 + CA264_18885 0.40 +0.1
4,382,370 - CA264_18885 0.49 +0.3
4,382,373 + CA264_18885 0.49 +0.6
4,382,373 + CA264_18885 0.49 +0.3
4,382,374 - CA264_18885 0.49 +1.1
4,382,374 - CA264_18885 0.49 +0.3
4,382,408 - CA264_18885 0.53 +1.1
4,382,408 - CA264_18885 0.53 -0.7
4,382,451 - CA264_18885 0.58 -0.6
4,382,451 - CA264_18885 0.58 -1.2
4,382,521 - CA264_18885 0.65 +0.1
4,382,548 + CA264_18885 0.68 -0.4
4,382,563 - CA264_18885 0.70 +2.2
4,382,585 + CA264_18885 0.72 +0.0
4,382,585 + CA264_18885 0.72 +0.9
4,382,585 + CA264_18885 0.72 +1.1
4,382,585 + CA264_18885 0.72 -0.8
4,382,585 + CA264_18885 0.72 -0.1
4,382,585 + CA264_18885 0.72 -0.4
4,382,586 - CA264_18885 0.72 +0.1
4,382,605 + CA264_18885 0.74 -1.3
4,382,606 - CA264_18885 0.75 -0.3
4,382,695 + CA264_18885 0.84 +0.5
4,382,734 - CA264_18885 0.89 -0.5
4,382,821 - +0.3
4,382,827 - -0.8
4,382,865 + +1.2
4,382,871 + +1.0
4,382,875 - -0.0
4,382,875 - +2.1
4,382,899 - -0.8
4,382,903 + -0.4
4,382,904 - -0.5
4,382,904 - +0.9
4,382,906 - -0.5
4,382,907 + -0.0
4,382,907 + +0.1
4,382,908 - -0.2
4,382,934 - +0.1
4,382,947 + -0.1
4,382,949 + +0.2
4,383,037 + -0.6
4,383,037 + -0.9
4,384,039 + +0.8
4,384,043 + -0.1
4,384,043 + -0.0
4,384,048 - +0.3
4,384,048 - +0.2
4,384,048 - -0.2
4,384,050 + -0.3
4,384,051 - -0.1
4,384,348 + +0.3
4,384,366 + +0.7
4,384,366 + -0.4
4,384,378 + -0.3
4,384,378 + -0.4
4,384,378 + -0.0
4,384,567 + +0.7
4,384,568 - -0.2
4,384,568 - +1.1
4,384,631 + CA264_18895 0.11 -0.2
4,384,635 + CA264_18895 0.11 -0.2
4,384,636 - CA264_18895 0.11 -0.9
4,384,717 + CA264_18895 0.14 -0.6
4,384,718 - CA264_18895 0.14 +0.1
4,384,718 - CA264_18895 0.14 -0.3
4,384,776 - CA264_18895 0.16 -1.3
4,384,793 + CA264_18895 0.17 -0.5
4,384,793 + CA264_18895 0.17 +1.0
4,384,793 + CA264_18895 0.17 -0.1
4,384,796 + CA264_18895 0.17 +0.1
4,384,797 - CA264_18895 0.17 +0.2
4,384,846 + CA264_18895 0.19 +0.7
4,384,847 - CA264_18895 0.19 -0.1
4,384,847 - CA264_18895 0.19 -1.1
4,384,850 + CA264_18895 0.19 +1.2
4,384,850 + CA264_18895 0.19 +1.2
4,384,850 + CA264_18895 0.19 +0.3
4,384,852 + CA264_18895 0.19 -0.3
4,384,852 + CA264_18895 0.19 -0.6
4,384,852 + CA264_18895 0.19 +0.0
4,384,852 + CA264_18895 0.19 -0.1
4,384,853 - CA264_18895 0.19 -0.1
4,384,853 - CA264_18895 0.19 -0.0
4,384,853 - CA264_18895 0.19 +0.2
4,384,856 + CA264_18895 0.19 +0.3
4,384,857 - CA264_18895 0.19 +0.1
4,384,857 - CA264_18895 0.19 +0.1
4,384,860 - CA264_18895 0.20 -0.8
4,384,860 - CA264_18895 0.20 -0.2
4,384,911 + CA264_18895 0.22 -1.4
4,384,937 - CA264_18895 0.23 +0.0
4,384,948 - CA264_18895 0.23 -0.5

Or see this region's nucleotide sequence