Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18545 and CA264_18550 are separated by 321 nucleotides CA264_18550 and CA264_18555 are separated by 81 nucleotides CA264_18555 and CA264_18560 are separated by 202 nucleotides CA264_18560 and CA264_18565 are separated by 2 nucleotides
CA264_18545: CA264_18545 - DNA mismatch repair protein MutS, at 4,314,652 to 4,317,285
_18545
CA264_18550: CA264_18550 - tRNA-Gly, at 4,317,607 to 4,317,679
_18550
CA264_18555: CA264_18555 - tRNA-Leu, at 4,317,761 to 4,317,844
_18555
CA264_18560: CA264_18560 - hypothetical protein, at 4,318,047 to 4,319,141
_18560
CA264_18565: CA264_18565 - hypothetical protein, at 4,319,144 to 4,320,349
_18565
Position (kb)
4318
4319
4320 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4317.415 kb on - strand at 4317.415 kb on - strand at 4317.872 kb on + strand at 4317.984 kb on - strand at 4318.117 kb on + strand at 4318.118 kb on - strand at 4318.123 kb on + strand at 4318.124 kb on - strand at 4318.126 kb on - strand at 4318.130 kb on - strand at 4318.137 kb on + strand at 4318.138 kb on - strand at 4318.141 kb on - strand at 4318.168 kb on + strand, within CA264_18560 at 4318.217 kb on + strand, within CA264_18560 at 4318.217 kb on + strand, within CA264_18560 at 4318.218 kb on - strand, within CA264_18560 at 4318.218 kb on - strand, within CA264_18560 at 4318.318 kb on + strand, within CA264_18560 at 4318.319 kb on - strand, within CA264_18560 at 4318.332 kb on + strand, within CA264_18560 at 4318.332 kb on + strand, within CA264_18560 at 4318.335 kb on + strand, within CA264_18560 at 4318.336 kb on - strand at 4318.378 kb on + strand, within CA264_18560 at 4318.379 kb on - strand, within CA264_18560 at 4318.393 kb on + strand, within CA264_18560 at 4318.431 kb on - strand, within CA264_18560 at 4318.457 kb on + strand, within CA264_18560 at 4318.474 kb on + strand, within CA264_18560 at 4318.500 kb on - strand, within CA264_18560 at 4318.500 kb on - strand, within CA264_18560 at 4318.542 kb on - strand, within CA264_18560 at 4318.563 kb on - strand, within CA264_18560 at 4318.576 kb on + strand, within CA264_18560 at 4318.642 kb on + strand, within CA264_18560 at 4318.649 kb on - strand, within CA264_18560 at 4318.748 kb on + strand, within CA264_18560 at 4318.749 kb on - strand, within CA264_18560 at 4318.769 kb on + strand, within CA264_18560 at 4318.769 kb on + strand, within CA264_18560 at 4318.771 kb on + strand, within CA264_18560 at 4318.771 kb on + strand, within CA264_18560 at 4318.827 kb on - strand, within CA264_18560 at 4318.877 kb on + strand, within CA264_18560 at 4318.951 kb on + strand, within CA264_18560 at 4318.961 kb on + strand, within CA264_18560 at 4318.962 kb on - strand, within CA264_18560 at 4318.964 kb on + strand, within CA264_18560 at 4318.965 kb on - strand, within CA264_18560 at 4318.994 kb on + strand, within CA264_18560 at 4319.002 kb on + strand, within CA264_18560 at 4319.003 kb on - strand, within CA264_18560 at 4319.011 kb on + strand, within CA264_18560 at 4319.012 kb on - strand, within CA264_18560 at 4319.016 kb on + strand, within CA264_18560 at 4319.024 kb on + strand, within CA264_18560 at 4319.025 kb on - strand, within CA264_18560 at 4319.076 kb on + strand at 4319.076 kb on + strand at 4319.077 kb on - strand at 4319.080 kb on + strand at 4319.080 kb on + strand at 4319.081 kb on - strand at 4319.081 kb on - strand at 4319.081 kb on - strand at 4319.150 kb on - strand at 4319.161 kb on + strand at 4319.161 kb on + strand at 4319.226 kb on + strand at 4319.227 kb on - strand at 4319.256 kb on + strand at 4319.273 kb on + strand, within CA264_18565 at 4319.273 kb on + strand, within CA264_18565 at 4319.280 kb on + strand, within CA264_18565 at 4319.281 kb on - strand, within CA264_18565 at 4319.287 kb on + strand, within CA264_18565 at 4319.288 kb on - strand, within CA264_18565 at 4319.297 kb on + strand, within CA264_18565 at 4319.300 kb on - strand, within CA264_18565 at 4319.310 kb on + strand, within CA264_18565 at 4319.310 kb on + strand, within CA264_18565 at 4319.311 kb on - strand, within CA264_18565 at 4319.334 kb on + strand, within CA264_18565 at 4319.335 kb on - strand, within CA264_18565 at 4319.337 kb on - strand, within CA264_18565 at 4319.337 kb on - strand, within CA264_18565 at 4319.352 kb on + strand, within CA264_18565 at 4319.366 kb on + strand, within CA264_18565 at 4319.367 kb on - strand, within CA264_18565 at 4319.367 kb on - strand, within CA264_18565 at 4319.367 kb on - strand, within CA264_18565 at 4319.368 kb on + strand, within CA264_18565 at 4319.368 kb on + strand, within CA264_18565 at 4319.368 kb on + strand, within CA264_18565 at 4319.369 kb on - strand, within CA264_18565 at 4319.371 kb on - strand, within CA264_18565 at 4319.400 kb on - strand, within CA264_18565 at 4319.405 kb on - strand, within CA264_18565 at 4319.424 kb on + strand, within CA264_18565 at 4319.425 kb on - strand, within CA264_18565 at 4319.453 kb on - strand, within CA264_18565 at 4319.550 kb on + strand, within CA264_18565 at 4319.551 kb on - strand, within CA264_18565 at 4319.552 kb on + strand, within CA264_18565 at 4319.553 kb on - strand, within CA264_18565 at 4319.557 kb on + strand, within CA264_18565 at 4319.557 kb on + strand, within CA264_18565 at 4319.575 kb on - strand, within CA264_18565 at 4319.594 kb on - strand, within CA264_18565 at 4319.600 kb on - strand, within CA264_18565 at 4319.610 kb on + strand, within CA264_18565 at 4319.614 kb on + strand, within CA264_18565 at 4319.614 kb on + strand, within CA264_18565 at 4319.620 kb on + strand, within CA264_18565 at 4319.620 kb on + strand, within CA264_18565 at 4319.634 kb on - strand, within CA264_18565 at 4319.636 kb on + strand, within CA264_18565 at 4319.639 kb on + strand, within CA264_18565 at 4319.639 kb on + strand, within CA264_18565 at 4319.640 kb on - strand, within CA264_18565 at 4319.648 kb on - strand, within CA264_18565 at 4319.650 kb on + strand, within CA264_18565 at 4319.650 kb on + strand, within CA264_18565 at 4319.650 kb on + strand, within CA264_18565 at 4319.651 kb on - strand, within CA264_18565 at 4319.653 kb on + strand, within CA264_18565 at 4319.707 kb on + strand, within CA264_18565 at 4319.746 kb on + strand, within CA264_18565 at 4319.748 kb on + strand, within CA264_18565 at 4319.767 kb on + strand, within CA264_18565 at 4319.781 kb on + strand, within CA264_18565 at 4319.782 kb on - strand, within CA264_18565 at 4319.785 kb on + strand, within CA264_18565 at 4319.785 kb on + strand, within CA264_18565 at 4319.786 kb on - strand, within CA264_18565 at 4319.786 kb on - strand, within CA264_18565 at 4319.786 kb on - strand, within CA264_18565 at 4319.788 kb on + strand, within CA264_18565 at 4319.807 kb on + strand, within CA264_18565 at 4319.860 kb on + strand, within CA264_18565 at 4319.861 kb on - strand, within CA264_18565 at 4319.865 kb on + strand, within CA264_18565 at 4319.865 kb on + strand, within CA264_18565 at 4319.878 kb on + strand, within CA264_18565 at 4319.902 kb on + strand, within CA264_18565 at 4319.906 kb on - strand, within CA264_18565 at 4319.908 kb on + strand, within CA264_18565 at 4319.908 kb on + strand, within CA264_18565 at 4319.908 kb on + strand, within CA264_18565 at 4319.926 kb on - strand, within CA264_18565 at 4319.930 kb on - strand, within CA264_18565 at 4319.938 kb on + strand, within CA264_18565 at 4319.945 kb on + strand, within CA264_18565 at 4319.982 kb on + strand, within CA264_18565 at 4319.983 kb on - strand, within CA264_18565 at 4319.998 kb on - strand, within CA264_18565 at 4320.001 kb on + strand, within CA264_18565 at 4320.016 kb on + strand, within CA264_18565 at 4320.030 kb on + strand, within CA264_18565 at 4320.031 kb on - strand, within CA264_18565 at 4320.131 kb on - strand, within CA264_18565
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 4,317,415 - +0.0 4,317,415 - +0.2 4,317,872 + +0.1 4,317,984 - +0.7 4,318,117 + -0.0 4,318,118 - +0.2 4,318,123 + -0.1 4,318,124 - +1.9 4,318,126 - +1.2 4,318,130 - +0.3 4,318,137 + -0.6 4,318,138 - -0.1 4,318,141 - +0.4 4,318,168 + CA264_18560 0.11 +0.6 4,318,217 + CA264_18560 0.16 +1.5 4,318,217 + CA264_18560 0.16 -0.2 4,318,218 - CA264_18560 0.16 +0.6 4,318,218 - CA264_18560 0.16 -1.0 4,318,318 + CA264_18560 0.25 +0.3 4,318,319 - CA264_18560 0.25 +0.2 4,318,332 + CA264_18560 0.26 -0.3 4,318,332 + CA264_18560 0.26 -0.6 4,318,335 + CA264_18560 0.26 -0.3 4,318,336 - +1.1 4,318,378 + CA264_18560 0.30 +0.8 4,318,379 - CA264_18560 0.30 -1.3 4,318,393 + CA264_18560 0.32 +1.2 4,318,431 - CA264_18560 0.35 +0.2 4,318,457 + CA264_18560 0.37 +0.3 4,318,474 + CA264_18560 0.39 +0.7 4,318,500 - CA264_18560 0.41 +0.1 4,318,500 - CA264_18560 0.41 +0.2 4,318,542 - CA264_18560 0.45 +0.1 4,318,563 - CA264_18560 0.47 -0.3 4,318,576 + CA264_18560 0.48 +0.0 4,318,642 + CA264_18560 0.54 +0.9 4,318,649 - CA264_18560 0.55 -0.5 4,318,748 + CA264_18560 0.64 -0.3 4,318,749 - CA264_18560 0.64 +0.6 4,318,769 + CA264_18560 0.66 +0.3 4,318,769 + CA264_18560 0.66 +0.0 4,318,771 + CA264_18560 0.66 -0.3 4,318,771 + CA264_18560 0.66 -0.3 4,318,827 - CA264_18560 0.71 +0.4 4,318,877 + CA264_18560 0.76 +0.4 4,318,951 + CA264_18560 0.83 -0.5 4,318,961 + CA264_18560 0.83 +1.4 4,318,962 - CA264_18560 0.84 +0.2 4,318,964 + CA264_18560 0.84 +0.5 4,318,965 - CA264_18560 0.84 -0.5 4,318,994 + CA264_18560 0.86 +1.5 4,319,002 + CA264_18560 0.87 +1.1 4,319,003 - CA264_18560 0.87 +0.2 4,319,011 + CA264_18560 0.88 -0.4 4,319,012 - CA264_18560 0.88 +0.1 4,319,016 + CA264_18560 0.88 +0.4 4,319,024 + CA264_18560 0.89 -0.4 4,319,025 - CA264_18560 0.89 -0.5 4,319,076 + -1.0 4,319,076 + -0.3 4,319,077 - +0.2 4,319,080 + -0.4 4,319,080 + -0.7 4,319,081 - +0.2 4,319,081 - +0.8 4,319,081 - +0.3 4,319,150 - +0.8 4,319,161 + +0.3 4,319,161 + -0.1 4,319,226 + +0.5 4,319,227 - +0.6 4,319,256 + +0.7 4,319,273 + CA264_18565 0.11 -0.2 4,319,273 + CA264_18565 0.11 -0.1 4,319,280 + CA264_18565 0.11 +0.0 4,319,281 - CA264_18565 0.11 -0.2 4,319,287 + CA264_18565 0.12 +0.7 4,319,288 - CA264_18565 0.12 -0.3 4,319,297 + CA264_18565 0.13 -0.7 4,319,300 - CA264_18565 0.13 +0.4 4,319,310 + CA264_18565 0.14 +0.1 4,319,310 + CA264_18565 0.14 -1.6 4,319,311 - CA264_18565 0.14 +0.9 4,319,334 + CA264_18565 0.16 +0.2 4,319,335 - CA264_18565 0.16 +0.3 4,319,337 - CA264_18565 0.16 +0.4 4,319,337 - CA264_18565 0.16 -0.5 4,319,352 + CA264_18565 0.17 +0.5 4,319,366 + CA264_18565 0.18 -0.2 4,319,367 - CA264_18565 0.18 +0.7 4,319,367 - CA264_18565 0.18 -0.6 4,319,367 - CA264_18565 0.18 +0.2 4,319,368 + CA264_18565 0.19 -0.9 4,319,368 + CA264_18565 0.19 +0.4 4,319,368 + CA264_18565 0.19 +1.7 4,319,369 - CA264_18565 0.19 +0.3 4,319,371 - CA264_18565 0.19 +0.4 4,319,400 - CA264_18565 0.21 +0.3 4,319,405 - CA264_18565 0.22 +0.6 4,319,424 + CA264_18565 0.23 -0.1 4,319,425 - CA264_18565 0.23 +1.0 4,319,453 - CA264_18565 0.26 -1.0 4,319,550 + CA264_18565 0.34 -0.1 4,319,551 - CA264_18565 0.34 +0.8 4,319,552 + CA264_18565 0.34 +0.2 4,319,553 - CA264_18565 0.34 -0.7 4,319,557 + CA264_18565 0.34 +0.6 4,319,557 + CA264_18565 0.34 +0.4 4,319,575 - CA264_18565 0.36 +0.0 4,319,594 - CA264_18565 0.37 -0.3 4,319,600 - CA264_18565 0.38 -1.8 4,319,610 + CA264_18565 0.39 +0.7 4,319,614 + CA264_18565 0.39 -1.1 4,319,614 + CA264_18565 0.39 +0.2 4,319,620 + CA264_18565 0.39 -0.9 4,319,620 + CA264_18565 0.39 -0.0 4,319,634 - CA264_18565 0.41 -0.4 4,319,636 + CA264_18565 0.41 -0.3 4,319,639 + CA264_18565 0.41 +0.9 4,319,639 + CA264_18565 0.41 -0.3 4,319,640 - CA264_18565 0.41 +0.2 4,319,648 - CA264_18565 0.42 -0.9 4,319,650 + CA264_18565 0.42 +0.7 4,319,650 + CA264_18565 0.42 -0.9 4,319,650 + CA264_18565 0.42 -0.1 4,319,651 - CA264_18565 0.42 +0.1 4,319,653 + CA264_18565 0.42 +0.6 4,319,707 + CA264_18565 0.47 +0.4 4,319,746 + CA264_18565 0.50 +0.3 4,319,748 + CA264_18565 0.50 +0.3 4,319,767 + CA264_18565 0.52 -2.2 4,319,781 + CA264_18565 0.53 +0.1 4,319,782 - CA264_18565 0.53 -0.3 4,319,785 + CA264_18565 0.53 +0.3 4,319,785 + CA264_18565 0.53 +0.4 4,319,786 - CA264_18565 0.53 +2.0 4,319,786 - CA264_18565 0.53 +0.2 4,319,786 - CA264_18565 0.53 +0.4 4,319,788 + CA264_18565 0.53 +0.2 4,319,807 + CA264_18565 0.55 +0.2 4,319,860 + CA264_18565 0.59 -0.6 4,319,861 - CA264_18565 0.59 -0.6 4,319,865 + CA264_18565 0.60 +0.6 4,319,865 + CA264_18565 0.60 -0.4 4,319,878 + CA264_18565 0.61 -1.0 4,319,902 + CA264_18565 0.63 -0.5 4,319,906 - CA264_18565 0.63 +0.4 4,319,908 + CA264_18565 0.63 +0.3 4,319,908 + CA264_18565 0.63 +1.0 4,319,908 + CA264_18565 0.63 -0.4 4,319,926 - CA264_18565 0.65 +0.2 4,319,930 - CA264_18565 0.65 +0.4 4,319,938 + CA264_18565 0.66 +1.3 4,319,945 + CA264_18565 0.66 -0.3 4,319,982 + CA264_18565 0.69 -0.2 4,319,983 - CA264_18565 0.70 -1.6 4,319,998 - CA264_18565 0.71 -0.0 4,320,001 + CA264_18565 0.71 -0.7 4,320,016 + CA264_18565 0.72 +0.5 4,320,030 + CA264_18565 0.73 -0.1 4,320,031 - CA264_18565 0.74 +0.2 4,320,131 - CA264_18565 0.82 +0.7
Or see this region's nucleotide sequence