Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18400 and CA264_18405 are separated by 62 nucleotides CA264_18405 and CA264_18410 are separated by 137 nucleotides CA264_18410 and CA264_18415 are separated by 246 nucleotides
CA264_18400: CA264_18400 - hypothetical protein, at 4,279,349 to 4,280,101
_18400
CA264_18405: CA264_18405 - hypothetical protein, at 4,280,164 to 4,280,796
_18405
CA264_18410: CA264_18410 - glycine dehydrogenase (aminomethyl-transferring), at 4,280,934 to 4,283,852
_18410
CA264_18415: CA264_18415 - alanine dehydrogenase, at 4,284,099 to 4,285,343
_18415
Position (kb)
4280
4281
4282
4283
4284 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4279.934 kb on - strand, within CA264_18400 at 4279.934 kb on - strand, within CA264_18400 at 4279.935 kb on + strand, within CA264_18400 at 4279.946 kb on + strand, within CA264_18400 at 4279.957 kb on + strand, within CA264_18400 at 4279.977 kb on + strand, within CA264_18400 at 4279.985 kb on + strand, within CA264_18400 at 4279.987 kb on + strand, within CA264_18400 at 4279.987 kb on + strand, within CA264_18400 at 4279.987 kb on + strand, within CA264_18400 at 4279.988 kb on - strand, within CA264_18400 at 4279.988 kb on - strand, within CA264_18400 at 4279.999 kb on - strand, within CA264_18400 at 4279.999 kb on - strand, within CA264_18400 at 4280.026 kb on + strand at 4280.064 kb on - strand at 4280.076 kb on + strand at 4280.077 kb on - strand at 4280.077 kb on - strand at 4280.153 kb on + strand at 4280.154 kb on - strand at 4280.154 kb on - strand at 4280.156 kb on + strand at 4280.157 kb on - strand at 4280.341 kb on + strand, within CA264_18405 at 4280.378 kb on + strand, within CA264_18405 at 4280.378 kb on + strand, within CA264_18405 at 4280.378 kb on + strand, within CA264_18405 at 4280.378 kb on + strand, within CA264_18405 at 4280.384 kb on + strand, within CA264_18405 at 4280.402 kb on + strand, within CA264_18405 at 4280.438 kb on + strand, within CA264_18405 at 4280.438 kb on + strand, within CA264_18405 at 4280.438 kb on + strand, within CA264_18405 at 4280.439 kb on - strand, within CA264_18405 at 4280.481 kb on - strand, within CA264_18405 at 4280.561 kb on + strand, within CA264_18405 at 4280.740 kb on + strand at 4280.742 kb on + strand at 4280.742 kb on + strand at 4280.742 kb on + strand at 4280.743 kb on - strand at 4280.743 kb on - strand at 4280.743 kb on - strand at 4280.743 kb on - strand at 4280.798 kb on + strand at 4280.799 kb on - strand at 4280.799 kb on - strand at 4280.800 kb on + strand at 4280.800 kb on + strand at 4280.800 kb on + strand at 4280.800 kb on + strand at 4280.800 kb on + strand at 4280.800 kb on + strand at 4280.800 kb on + strand at 4280.801 kb on - strand at 4280.801 kb on - strand at 4280.801 kb on - strand at 4280.806 kb on + strand at 4280.806 kb on + strand at 4280.806 kb on + strand at 4280.807 kb on - strand at 4280.807 kb on - strand at 4280.807 kb on - strand at 4280.807 kb on - strand at 4280.857 kb on - strand at 4280.915 kb on + strand at 4280.916 kb on - strand at 4280.940 kb on + strand at 4280.940 kb on + strand at 4280.941 kb on - strand at 4280.971 kb on + strand at 4280.972 kb on - strand at 4281.328 kb on + strand, within CA264_18410 at 4281.884 kb on - strand, within CA264_18410 at 4282.343 kb on + strand, within CA264_18410 at 4282.538 kb on + strand, within CA264_18410 at 4283.053 kb on - strand, within CA264_18410 at 4283.165 kb on + strand, within CA264_18410 at 4283.569 kb on - strand at 4283.619 kb on - strand at 4283.862 kb on - strand at 4283.862 kb on - strand at 4283.864 kb on - strand at 4283.864 kb on - strand at 4283.866 kb on + strand at 4283.866 kb on + strand at 4283.866 kb on + strand at 4283.866 kb on + strand at 4283.866 kb on + strand at 4283.867 kb on - strand at 4283.867 kb on - strand at 4283.867 kb on - strand at 4283.915 kb on + strand at 4283.939 kb on + strand at 4283.942 kb on + strand at 4283.945 kb on + strand at 4283.950 kb on + strand at 4283.951 kb on - strand at 4283.953 kb on + strand at 4283.953 kb on + strand at 4283.955 kb on + strand at 4283.955 kb on + strand at 4283.997 kb on + strand at 4284.060 kb on - strand at 4284.092 kb on + strand at 4284.109 kb on + strand at 4284.110 kb on - strand at 4284.124 kb on + strand at 4284.124 kb on + strand at 4284.149 kb on + strand at 4284.450 kb on + strand, within CA264_18415 at 4284.450 kb on + strand, within CA264_18415 at 4284.509 kb on + strand, within CA264_18415 at 4284.510 kb on - strand, within CA264_18415 at 4284.510 kb on - strand, within CA264_18415 at 4284.522 kb on + strand, within CA264_18415 at 4284.523 kb on - strand, within CA264_18415 at 4284.541 kb on - strand, within CA264_18415 at 4284.563 kb on + strand, within CA264_18415 at 4284.564 kb on - strand, within CA264_18415 at 4284.579 kb on + strand, within CA264_18415 at 4284.580 kb on - strand, within CA264_18415 at 4284.615 kb on + strand, within CA264_18415 at 4284.738 kb on + strand, within CA264_18415 at 4284.763 kb on + strand, within CA264_18415 at 4284.763 kb on - strand, within CA264_18415 at 4284.812 kb on - strand, within CA264_18415 at 4284.847 kb on + strand, within CA264_18415 at 4284.847 kb on + strand, within CA264_18415 at 4284.847 kb on + strand, within CA264_18415 at 4284.847 kb on + strand, within CA264_18415 at 4284.847 kb on + strand, within CA264_18415 at 4284.848 kb on - strand, within CA264_18415 at 4284.848 kb on - strand, within CA264_18415 at 4284.849 kb on + strand, within CA264_18415 at 4284.850 kb on - strand, within CA264_18415 at 4284.851 kb on + strand, within CA264_18415 at 4284.851 kb on + strand, within CA264_18415 at 4284.851 kb on + strand, within CA264_18415 at 4284.852 kb on - strand, within CA264_18415 at 4284.852 kb on - strand, within CA264_18415 at 4284.852 kb on - strand, within CA264_18415
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 4,279,934 - CA264_18400 0.78 -1.0 4,279,934 - CA264_18400 0.78 +0.2 4,279,935 + CA264_18400 0.78 +0.1 4,279,946 + CA264_18400 0.79 -0.2 4,279,957 + CA264_18400 0.81 -0.7 4,279,977 + CA264_18400 0.83 -0.3 4,279,985 + CA264_18400 0.84 +0.8 4,279,987 + CA264_18400 0.85 +1.7 4,279,987 + CA264_18400 0.85 -0.3 4,279,987 + CA264_18400 0.85 -0.5 4,279,988 - CA264_18400 0.85 -0.9 4,279,988 - CA264_18400 0.85 -1.8 4,279,999 - CA264_18400 0.86 -0.1 4,279,999 - CA264_18400 0.86 +0.3 4,280,026 + -0.0 4,280,064 - -1.3 4,280,076 + -0.1 4,280,077 - +0.7 4,280,077 - -1.4 4,280,153 + -0.1 4,280,154 - +0.9 4,280,154 - -0.2 4,280,156 + -0.5 4,280,157 - -0.5 4,280,341 + CA264_18405 0.28 -0.9 4,280,378 + CA264_18405 0.34 -1.1 4,280,378 + CA264_18405 0.34 -0.3 4,280,378 + CA264_18405 0.34 -0.7 4,280,378 + CA264_18405 0.34 -0.2 4,280,384 + CA264_18405 0.35 -0.5 4,280,402 + CA264_18405 0.38 +0.4 4,280,438 + CA264_18405 0.43 -1.7 4,280,438 + CA264_18405 0.43 -0.8 4,280,438 + CA264_18405 0.43 -0.9 4,280,439 - CA264_18405 0.43 -0.7 4,280,481 - CA264_18405 0.50 -0.5 4,280,561 + CA264_18405 0.63 +0.6 4,280,740 + -0.5 4,280,742 + +0.1 4,280,742 + -0.4 4,280,742 + -0.5 4,280,743 - -0.1 4,280,743 - -2.6 4,280,743 - +0.1 4,280,743 - -0.9 4,280,798 + -0.2 4,280,799 - -0.7 4,280,799 - +1.0 4,280,800 + +0.8 4,280,800 + -0.7 4,280,800 + -0.1 4,280,800 + -0.3 4,280,800 + -0.6 4,280,800 + -0.2 4,280,800 + +0.1 4,280,801 - -0.5 4,280,801 - +0.2 4,280,801 - +0.2 4,280,806 + +0.5 4,280,806 + -0.8 4,280,806 + -0.1 4,280,807 - -0.3 4,280,807 - +1.1 4,280,807 - +0.4 4,280,807 - +1.7 4,280,857 - -0.7 4,280,915 + +0.4 4,280,916 - +0.1 4,280,940 + +0.1 4,280,940 + -0.5 4,280,941 - -1.7 4,280,971 + -0.2 4,280,972 - -1.8 4,281,328 + CA264_18410 0.13 +0.7 4,281,884 - CA264_18410 0.33 +0.4 4,282,343 + CA264_18410 0.48 -0.1 4,282,538 + CA264_18410 0.55 -1.3 4,283,053 - CA264_18410 0.73 -1.7 4,283,165 + CA264_18410 0.76 -1.4 4,283,569 - +0.5 4,283,619 - +0.8 4,283,862 - -0.4 4,283,862 - -0.4 4,283,864 - +0.0 4,283,864 - -1.2 4,283,866 + +0.4 4,283,866 + +0.6 4,283,866 + -0.4 4,283,866 + -0.2 4,283,866 + +0.6 4,283,867 - -0.5 4,283,867 - -0.8 4,283,867 - +0.3 4,283,915 + -0.3 4,283,939 + -0.7 4,283,942 + -0.3 4,283,945 + +0.5 4,283,950 + -0.5 4,283,951 - -1.1 4,283,953 + +0.9 4,283,953 + -0.3 4,283,955 + +0.1 4,283,955 + -0.5 4,283,997 + -0.4 4,284,060 - -0.5 4,284,092 + +0.1 4,284,109 + -0.4 4,284,110 - +0.5 4,284,124 + +2.7 4,284,124 + -0.0 4,284,149 + +1.1 4,284,450 + CA264_18415 0.28 -0.5 4,284,450 + CA264_18415 0.28 +0.2 4,284,509 + CA264_18415 0.33 -0.2 4,284,510 - CA264_18415 0.33 -1.7 4,284,510 - CA264_18415 0.33 -0.7 4,284,522 + CA264_18415 0.34 -1.8 4,284,523 - CA264_18415 0.34 +1.2 4,284,541 - CA264_18415 0.36 +0.2 4,284,563 + CA264_18415 0.37 -0.0 4,284,564 - CA264_18415 0.37 -0.0 4,284,579 + CA264_18415 0.39 +0.3 4,284,580 - CA264_18415 0.39 +0.4 4,284,615 + CA264_18415 0.41 +1.1 4,284,738 + CA264_18415 0.51 -0.0 4,284,763 + CA264_18415 0.53 -0.2 4,284,763 - CA264_18415 0.53 +0.4 4,284,812 - CA264_18415 0.57 -0.4 4,284,847 + CA264_18415 0.60 +0.1 4,284,847 + CA264_18415 0.60 +0.5 4,284,847 + CA264_18415 0.60 +1.2 4,284,847 + CA264_18415 0.60 -0.5 4,284,847 + CA264_18415 0.60 -0.5 4,284,848 - CA264_18415 0.60 +0.6 4,284,848 - CA264_18415 0.60 -0.6 4,284,849 + CA264_18415 0.60 +0.5 4,284,850 - CA264_18415 0.60 -2.7 4,284,851 + CA264_18415 0.60 +0.6 4,284,851 + CA264_18415 0.60 +1.8 4,284,851 + CA264_18415 0.60 +1.4 4,284,852 - CA264_18415 0.60 -0.4 4,284,852 - CA264_18415 0.60 -0.3 4,284,852 - CA264_18415 0.60 +1.0
Or see this region's nucleotide sequence