Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17840

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17835 and CA264_17840 are separated by 113 nucleotidesCA264_17840 and CA264_17845 are separated by 32 nucleotides CA264_17835: CA264_17835 - glutamyl-tRNA reductase, at 4,146,283 to 4,147,566 _17835 CA264_17840: CA264_17840 - ATP-binding protein, at 4,147,680 to 4,148,861 _17840 CA264_17845: CA264_17845 - GNAT family N-acetyltransferase, at 4,148,894 to 4,149,826 _17845 Position (kb) 4147 4148 4149Strain fitness (log2 ratio) -2 -1 0 1at 4147.625 kb on - strandat 4147.636 kb on - strandat 4147.642 kb on - strandat 4147.642 kb on - strandat 4147.651 kb on + strandat 4147.692 kb on + strandat 4147.761 kb on - strandat 4147.761 kb on - strandat 4147.767 kb on - strandat 4147.769 kb on + strandat 4147.769 kb on + strandat 4147.774 kb on + strandat 4147.775 kb on - strandat 4147.775 kb on - strandat 4147.775 kb on - strandat 4147.775 kb on - strandat 4147.789 kb on + strandat 4147.821 kb on + strand, within CA264_17840at 4147.878 kb on - strand, within CA264_17840at 4147.943 kb on + strand, within CA264_17840at 4147.955 kb on + strand, within CA264_17840at 4147.967 kb on + strand, within CA264_17840at 4148.315 kb on + strand, within CA264_17840at 4148.496 kb on - strand, within CA264_17840at 4148.522 kb on + strand, within CA264_17840at 4148.523 kb on - strand, within CA264_17840at 4148.526 kb on - strand, within CA264_17840at 4148.536 kb on + strand, within CA264_17840at 4148.613 kb on - strand, within CA264_17840at 4148.803 kb on - strandat 4148.891 kb on + strandat 4148.904 kb on + strandat 4148.904 kb on + strandat 4148.905 kb on - strandat 4148.907 kb on + strandat 4148.927 kb on - strandat 4148.992 kb on + strand, within CA264_17845at 4149.038 kb on + strand, within CA264_17845at 4149.116 kb on + strand, within CA264_17845at 4149.116 kb on + strand, within CA264_17845at 4149.214 kb on + strand, within CA264_17845at 4149.222 kb on - strand, within CA264_17845at 4149.224 kb on - strand, within CA264_17845at 4149.272 kb on + strand, within CA264_17845at 4149.272 kb on + strand, within CA264_17845at 4149.273 kb on - strand, within CA264_17845at 4149.416 kb on + strand, within CA264_17845at 4149.496 kb on - strand, within CA264_17845at 4149.529 kb on + strand, within CA264_17845at 4149.562 kb on - strand, within CA264_17845at 4149.582 kb on - strand, within CA264_17845at 4149.611 kb on + strand, within CA264_17845at 4149.684 kb on + strand, within CA264_17845at 4149.685 kb on - strand, within CA264_17845at 4149.685 kb on - strand, within CA264_17845at 4149.685 kb on - strand, within CA264_17845at 4149.685 kb on - strand, within CA264_17845at 4149.706 kb on + strand, within CA264_17845at 4149.707 kb on - strand, within CA264_17845at 4149.740 kb on + strandat 4149.740 kb on + strandat 4149.777 kb on - strandat 4149.835 kb on + strandat 4149.835 kb on + strandat 4149.836 kb on - strandat 4149.836 kb on - strandat 4149.836 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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4,147,625 - -0.3
4,147,636 - -1.0
4,147,642 - -0.1
4,147,642 - -0.4
4,147,651 + -0.2
4,147,692 + -0.7
4,147,761 - +1.0
4,147,761 - +0.0
4,147,767 - +1.2
4,147,769 + -0.7
4,147,769 + -0.4
4,147,774 + -0.8
4,147,775 - -0.5
4,147,775 - +0.7
4,147,775 - +0.2
4,147,775 - -0.8
4,147,789 + -0.3
4,147,821 + CA264_17840 0.12 -1.3
4,147,878 - CA264_17840 0.17 -0.4
4,147,943 + CA264_17840 0.22 -0.4
4,147,955 + CA264_17840 0.23 -1.6
4,147,967 + CA264_17840 0.24 +0.9
4,148,315 + CA264_17840 0.54 -0.3
4,148,496 - CA264_17840 0.69 -0.6
4,148,522 + CA264_17840 0.71 -0.2
4,148,523 - CA264_17840 0.71 +0.9
4,148,526 - CA264_17840 0.72 -0.1
4,148,536 + CA264_17840 0.72 -1.0
4,148,613 - CA264_17840 0.79 -1.4
4,148,803 - -0.4
4,148,891 + +0.3
4,148,904 + -0.3
4,148,904 + +1.2
4,148,905 - +0.1
4,148,907 + -0.6
4,148,927 - -0.6
4,148,992 + CA264_17845 0.11 -0.3
4,149,038 + CA264_17845 0.15 +0.2
4,149,116 + CA264_17845 0.24 -2.0
4,149,116 + CA264_17845 0.24 -1.0
4,149,214 + CA264_17845 0.34 -0.2
4,149,222 - CA264_17845 0.35 -0.4
4,149,224 - CA264_17845 0.35 +0.7
4,149,272 + CA264_17845 0.41 -0.6
4,149,272 + CA264_17845 0.41 +0.1
4,149,273 - CA264_17845 0.41 -1.1
4,149,416 + CA264_17845 0.56 -1.8
4,149,496 - CA264_17845 0.65 +1.5
4,149,529 + CA264_17845 0.68 +0.0
4,149,562 - CA264_17845 0.72 -0.5
4,149,582 - CA264_17845 0.74 -0.3
4,149,611 + CA264_17845 0.77 -0.3
4,149,684 + CA264_17845 0.85 -0.2
4,149,685 - CA264_17845 0.85 -0.9
4,149,685 - CA264_17845 0.85 -0.6
4,149,685 - CA264_17845 0.85 -1.0
4,149,685 - CA264_17845 0.85 -0.4
4,149,706 + CA264_17845 0.87 -0.6
4,149,707 - CA264_17845 0.87 -0.3
4,149,740 + -0.0
4,149,740 + +0.1
4,149,777 - +1.1
4,149,835 + -0.2
4,149,835 + -0.8
4,149,836 - +0.0
4,149,836 - +0.6
4,149,836 - +0.9

Or see this region's nucleotide sequence