Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11965

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11960 and CA264_11965 are separated by 416 nucleotidesCA264_11965 and CA264_11970 are separated by 44 nucleotidesCA264_11970 and CA264_11975 are separated by 72 nucleotides CA264_11960: CA264_11960 - transketolase, at 2,779,834 to 2,780,793 _11960 CA264_11965: CA264_11965 - RNA polymerase subunit sigma, at 2,781,210 to 2,781,749 _11965 CA264_11970: CA264_11970 - hypothetical protein, at 2,781,794 to 2,782,222 _11970 CA264_11975: CA264_11975 - hypothetical protein, at 2,782,295 to 2,782,684 _11975 Position (kb) 2781 2782Strain fitness (log2 ratio) -1 0 1at 2780.825 kb on + strandat 2780.830 kb on + strandat 2780.830 kb on + strandat 2780.831 kb on - strandat 2780.877 kb on + strandat 2780.878 kb on - strandat 2780.878 kb on - strandat 2781.031 kb on + strandat 2781.081 kb on + strandat 2781.154 kb on - strandat 2781.155 kb on + strandat 2781.155 kb on + strandat 2781.288 kb on + strand, within CA264_11965at 2781.288 kb on + strand, within CA264_11965at 2781.303 kb on + strand, within CA264_11965at 2781.303 kb on + strand, within CA264_11965at 2781.304 kb on - strand, within CA264_11965at 2781.376 kb on + strand, within CA264_11965at 2781.416 kb on - strand, within CA264_11965at 2781.417 kb on + strand, within CA264_11965at 2781.417 kb on + strand, within CA264_11965at 2781.417 kb on + strand, within CA264_11965at 2781.417 kb on + strand, within CA264_11965at 2781.418 kb on - strand, within CA264_11965at 2781.418 kb on - strand, within CA264_11965at 2781.418 kb on - strand, within CA264_11965at 2781.418 kb on - strand, within CA264_11965at 2781.505 kb on + strand, within CA264_11965at 2781.563 kb on - strand, within CA264_11965at 2781.574 kb on + strand, within CA264_11965at 2781.702 kb on + strandat 2781.724 kb on + strandat 2781.748 kb on - strandat 2781.780 kb on + strandat 2781.781 kb on - strandat 2781.781 kb on - strandat 2781.781 kb on - strandat 2781.840 kb on - strand, within CA264_11970at 2781.993 kb on - strand, within CA264_11970at 2781.993 kb on - strand, within CA264_11970at 2782.030 kb on - strand, within CA264_11970at 2782.155 kb on + strand, within CA264_11970at 2782.194 kb on - strandat 2782.199 kb on - strandat 2782.218 kb on - strandat 2782.220 kb on + strandat 2782.239 kb on - strandat 2782.246 kb on + strandat 2782.257 kb on + strandat 2782.285 kb on + strandat 2782.378 kb on + strand, within CA264_11975at 2782.422 kb on - strand, within CA264_11975at 2782.523 kb on - strand, within CA264_11975at 2782.523 kb on - strand, within CA264_11975

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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2,780,825 + -0.1
2,780,830 + -0.2
2,780,830 + -0.2
2,780,831 - -1.7
2,780,877 + -0.2
2,780,878 - -1.2
2,780,878 - +0.2
2,781,031 + -0.7
2,781,081 + -0.4
2,781,154 - -0.9
2,781,155 + -0.2
2,781,155 + +0.2
2,781,288 + CA264_11965 0.14 -0.1
2,781,288 + CA264_11965 0.14 +0.1
2,781,303 + CA264_11965 0.17 -0.2
2,781,303 + CA264_11965 0.17 +0.6
2,781,304 - CA264_11965 0.17 +0.9
2,781,376 + CA264_11965 0.31 -0.6
2,781,416 - CA264_11965 0.38 +1.7
2,781,417 + CA264_11965 0.38 -0.0
2,781,417 + CA264_11965 0.38 +0.3
2,781,417 + CA264_11965 0.38 +0.1
2,781,417 + CA264_11965 0.38 +0.3
2,781,418 - CA264_11965 0.39 -0.1
2,781,418 - CA264_11965 0.39 -0.1
2,781,418 - CA264_11965 0.39 +0.8
2,781,418 - CA264_11965 0.39 +0.7
2,781,505 + CA264_11965 0.55 +0.5
2,781,563 - CA264_11965 0.65 -0.1
2,781,574 + CA264_11965 0.67 +0.5
2,781,702 + +0.7
2,781,724 + +0.1
2,781,748 - +0.8
2,781,780 + +0.0
2,781,781 - -1.2
2,781,781 - -1.0
2,781,781 - -0.1
2,781,840 - CA264_11970 0.11 -0.4
2,781,993 - CA264_11970 0.46 +0.3
2,781,993 - CA264_11970 0.46 +0.2
2,782,030 - CA264_11970 0.55 +0.0
2,782,155 + CA264_11970 0.84 +0.2
2,782,194 - -0.7
2,782,199 - +0.5
2,782,218 - -0.5
2,782,220 + +0.0
2,782,239 - -1.4
2,782,246 + -1.2
2,782,257 + -0.6
2,782,285 + -0.5
2,782,378 + CA264_11975 0.21 -1.1
2,782,422 - CA264_11975 0.33 -0.8
2,782,523 - CA264_11975 0.58 +0.7
2,782,523 - CA264_11975 0.58 -1.0

Or see this region's nucleotide sequence