Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11240 and CA264_11245 are separated by 379 nucleotides CA264_11245 and CA264_11250 are separated by 39 nucleotides CA264_11250 and CA264_11255 are separated by 204 nucleotides
CA264_11240: CA264_11240 - class D beta-lactamase, at 2,602,620 to 2,603,417
_11240
CA264_11245: CA264_11245 - hypothetical protein, at 2,603,797 to 2,604,012
_11245
CA264_11250: CA264_11250 - hypothetical protein, at 2,604,052 to 2,604,663
_11250
CA264_11255: CA264_11255 - peptidase M13, at 2,604,868 to 2,606,928
_11255
Position (kb)
2604
2605 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2603.062 kb on + strand, within CA264_11240 at 2603.062 kb on + strand, within CA264_11240 at 2603.062 kb on + strand, within CA264_11240 at 2603.063 kb on - strand, within CA264_11240 at 2603.105 kb on + strand, within CA264_11240 at 2603.106 kb on - strand, within CA264_11240 at 2603.106 kb on - strand, within CA264_11240 at 2603.106 kb on - strand, within CA264_11240 at 2603.106 kb on - strand, within CA264_11240 at 2603.114 kb on - strand, within CA264_11240 at 2603.114 kb on - strand, within CA264_11240 at 2603.190 kb on + strand, within CA264_11240 at 2603.190 kb on + strand, within CA264_11240 at 2603.190 kb on + strand, within CA264_11240 at 2603.190 kb on + strand, within CA264_11240 at 2603.191 kb on - strand, within CA264_11240 at 2603.217 kb on - strand, within CA264_11240 at 2603.261 kb on + strand, within CA264_11240 at 2603.261 kb on + strand, within CA264_11240 at 2603.281 kb on - strand, within CA264_11240 at 2603.305 kb on + strand, within CA264_11240 at 2603.306 kb on - strand, within CA264_11240 at 2603.306 kb on - strand, within CA264_11240 at 2603.306 kb on - strand, within CA264_11240 at 2603.306 kb on - strand, within CA264_11240 at 2603.306 kb on - strand, within CA264_11240 at 2603.306 kb on - strand, within CA264_11240 at 2603.315 kb on + strand, within CA264_11240 at 2603.316 kb on - strand, within CA264_11240 at 2603.325 kb on + strand, within CA264_11240 at 2603.326 kb on - strand, within CA264_11240 at 2603.330 kb on + strand, within CA264_11240 at 2603.376 kb on + strand at 2603.377 kb on - strand at 2603.409 kb on + strand at 2603.410 kb on - strand at 2603.438 kb on - strand at 2603.454 kb on + strand at 2603.463 kb on + strand at 2603.464 kb on - strand at 2603.491 kb on + strand at 2603.511 kb on + strand at 2603.519 kb on + strand at 2603.536 kb on + strand at 2603.569 kb on - strand at 2603.605 kb on + strand at 2603.643 kb on + strand at 2603.643 kb on + strand at 2603.643 kb on + strand at 2603.643 kb on + strand at 2603.644 kb on - strand at 2603.644 kb on - strand at 2603.678 kb on - strand at 2603.678 kb on - strand at 2603.690 kb on - strand at 2603.693 kb on + strand at 2603.703 kb on + strand at 2603.725 kb on + strand at 2603.726 kb on - strand at 2603.747 kb on + strand at 2603.750 kb on + strand at 2603.751 kb on - strand at 2603.784 kb on + strand at 2603.810 kb on + strand at 2603.840 kb on - strand, within CA264_11245 at 2603.959 kb on + strand, within CA264_11245 at 2603.961 kb on + strand, within CA264_11245 at 2603.965 kb on - strand, within CA264_11245 at 2603.982 kb on + strand, within CA264_11245 at 2603.989 kb on + strand, within CA264_11245 at 2603.989 kb on + strand, within CA264_11245 at 2603.989 kb on + strand, within CA264_11245 at 2603.990 kb on - strand, within CA264_11245 at 2603.992 kb on + strand at 2603.992 kb on + strand at 2603.992 kb on + strand at 2604.012 kb on + strand at 2604.072 kb on + strand at 2604.072 kb on + strand at 2604.078 kb on + strand at 2604.079 kb on - strand at 2604.173 kb on - strand, within CA264_11250 at 2604.197 kb on + strand, within CA264_11250 at 2604.197 kb on + strand, within CA264_11250 at 2604.201 kb on + strand, within CA264_11250 at 2604.202 kb on - strand, within CA264_11250 at 2604.202 kb on - strand, within CA264_11250 at 2604.212 kb on + strand, within CA264_11250 at 2604.212 kb on - strand, within CA264_11250 at 2604.213 kb on - strand, within CA264_11250 at 2604.213 kb on - strand, within CA264_11250 at 2604.213 kb on - strand, within CA264_11250 at 2604.216 kb on + strand, within CA264_11250 at 2604.216 kb on + strand, within CA264_11250 at 2604.216 kb on + strand, within CA264_11250 at 2604.216 kb on + strand, within CA264_11250 at 2604.216 kb on + strand, within CA264_11250 at 2604.216 kb on + strand, within CA264_11250 at 2604.216 kb on + strand, within CA264_11250 at 2604.217 kb on - strand, within CA264_11250 at 2604.217 kb on - strand, within CA264_11250 at 2604.217 kb on - strand, within CA264_11250 at 2604.217 kb on - strand, within CA264_11250 at 2604.218 kb on + strand, within CA264_11250 at 2604.218 kb on + strand, within CA264_11250 at 2604.218 kb on + strand, within CA264_11250 at 2604.218 kb on + strand, within CA264_11250 at 2604.218 kb on + strand, within CA264_11250 at 2604.219 kb on - strand, within CA264_11250 at 2604.219 kb on - strand, within CA264_11250 at 2604.219 kb on - strand, within CA264_11250 at 2604.219 kb on - strand, within CA264_11250 at 2604.222 kb on + strand, within CA264_11250 at 2604.222 kb on + strand, within CA264_11250 at 2604.223 kb on - strand, within CA264_11250 at 2604.383 kb on - strand, within CA264_11250 at 2604.385 kb on - strand, within CA264_11250 at 2604.388 kb on + strand, within CA264_11250 at 2604.388 kb on + strand, within CA264_11250 at 2604.388 kb on + strand, within CA264_11250 at 2604.388 kb on + strand, within CA264_11250 at 2604.388 kb on + strand, within CA264_11250 at 2604.388 kb on + strand, within CA264_11250 at 2604.388 kb on + strand, within CA264_11250 at 2604.389 kb on - strand, within CA264_11250 at 2604.389 kb on - strand, within CA264_11250 at 2604.389 kb on - strand, within CA264_11250 at 2604.390 kb on + strand, within CA264_11250 at 2604.426 kb on + strand, within CA264_11250 at 2604.426 kb on + strand, within CA264_11250 at 2604.466 kb on - strand, within CA264_11250 at 2604.507 kb on - strand, within CA264_11250 at 2604.540 kb on + strand, within CA264_11250 at 2604.540 kb on + strand, within CA264_11250 at 2604.541 kb on - strand, within CA264_11250 at 2604.541 kb on - strand, within CA264_11250 at 2604.541 kb on - strand, within CA264_11250 at 2604.542 kb on + strand, within CA264_11250 at 2604.543 kb on - strand, within CA264_11250 at 2604.553 kb on + strand, within CA264_11250 at 2604.557 kb on + strand, within CA264_11250 at 2604.558 kb on - strand, within CA264_11250 at 2604.558 kb on - strand, within CA264_11250 at 2604.610 kb on + strand at 2604.697 kb on + strand at 2604.839 kb on + strand at 2604.854 kb on + strand at 2604.854 kb on + strand at 2604.909 kb on + strand at 2604.910 kb on - strand at 2604.951 kb on + strand at 2604.951 kb on + strand at 2605.107 kb on + strand, within CA264_11255 at 2605.142 kb on + strand, within CA264_11255 at 2605.152 kb on + strand, within CA264_11255 at 2605.152 kb on + strand, within CA264_11255 at 2605.153 kb on - strand, within CA264_11255 at 2605.163 kb on - strand, within CA264_11255 at 2605.189 kb on - strand, within CA264_11255 at 2605.226 kb on + strand, within CA264_11255 at 2605.236 kb on - strand, within CA264_11255 at 2605.475 kb on + strand, within CA264_11255 at 2605.475 kb on + strand, within CA264_11255 at 2605.479 kb on - strand, within CA264_11255 at 2605.543 kb on + strand, within CA264_11255 at 2605.543 kb on + strand, within CA264_11255 at 2605.543 kb on + strand, within CA264_11255 at 2605.554 kb on + strand, within CA264_11255 at 2605.555 kb on - strand, within CA264_11255 at 2605.555 kb on - strand, within CA264_11255 at 2605.557 kb on - strand, within CA264_11255
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 2,603,062 + CA264_11240 0.55 +0.3 2,603,062 + CA264_11240 0.55 +0.2 2,603,062 + CA264_11240 0.55 +0.5 2,603,063 - CA264_11240 0.56 +0.1 2,603,105 + CA264_11240 0.61 -0.1 2,603,106 - CA264_11240 0.61 -0.1 2,603,106 - CA264_11240 0.61 -0.5 2,603,106 - CA264_11240 0.61 +0.5 2,603,106 - CA264_11240 0.61 -0.5 2,603,114 - CA264_11240 0.62 -0.1 2,603,114 - CA264_11240 0.62 +0.8 2,603,190 + CA264_11240 0.71 +0.3 2,603,190 + CA264_11240 0.71 -0.8 2,603,190 + CA264_11240 0.71 +0.2 2,603,190 + CA264_11240 0.71 +0.1 2,603,191 - CA264_11240 0.72 +1.3 2,603,217 - CA264_11240 0.75 +0.2 2,603,261 + CA264_11240 0.80 +0.9 2,603,261 + CA264_11240 0.80 -0.2 2,603,281 - CA264_11240 0.83 +0.0 2,603,305 + CA264_11240 0.86 +0.2 2,603,306 - CA264_11240 0.86 +0.9 2,603,306 - CA264_11240 0.86 -0.1 2,603,306 - CA264_11240 0.86 -0.7 2,603,306 - CA264_11240 0.86 -0.1 2,603,306 - CA264_11240 0.86 -0.1 2,603,306 - CA264_11240 0.86 -0.6 2,603,315 + CA264_11240 0.87 -0.7 2,603,316 - CA264_11240 0.87 -0.2 2,603,325 + CA264_11240 0.88 +0.3 2,603,326 - CA264_11240 0.88 +0.5 2,603,330 + CA264_11240 0.89 -0.1 2,603,376 + -1.0 2,603,377 - -0.0 2,603,409 + -0.2 2,603,410 - +0.9 2,603,438 - +0.0 2,603,454 + -0.0 2,603,463 + +1.3 2,603,464 - -0.4 2,603,491 + +0.1 2,603,511 + -0.7 2,603,519 + +0.7 2,603,536 + +0.4 2,603,569 - -0.7 2,603,605 + -0.1 2,603,643 + +0.2 2,603,643 + +0.3 2,603,643 + -0.5 2,603,643 + -0.1 2,603,644 - -0.3 2,603,644 - -0.8 2,603,678 - +0.4 2,603,678 - +0.3 2,603,690 - -0.4 2,603,693 + -0.6 2,603,703 + +0.1 2,603,725 + -0.1 2,603,726 - +0.4 2,603,747 + +0.1 2,603,750 + -0.2 2,603,751 - -0.1 2,603,784 + +0.4 2,603,810 + -0.7 2,603,840 - CA264_11245 0.20 -1.4 2,603,959 + CA264_11245 0.75 -0.1 2,603,961 + CA264_11245 0.76 +0.8 2,603,965 - CA264_11245 0.78 +0.0 2,603,982 + CA264_11245 0.86 -0.8 2,603,989 + CA264_11245 0.89 +0.3 2,603,989 + CA264_11245 0.89 -0.9 2,603,989 + CA264_11245 0.89 -0.3 2,603,990 - CA264_11245 0.89 -0.0 2,603,992 + -0.6 2,603,992 + -0.1 2,603,992 + +0.0 2,604,012 + -0.1 2,604,072 + +0.0 2,604,072 + +0.4 2,604,078 + +0.4 2,604,079 - +0.3 2,604,173 - CA264_11250 0.20 -0.0 2,604,197 + CA264_11250 0.24 -0.3 2,604,197 + CA264_11250 0.24 -0.6 2,604,201 + CA264_11250 0.24 +2.3 2,604,202 - CA264_11250 0.25 +1.0 2,604,202 - CA264_11250 0.25 +0.0 2,604,212 + CA264_11250 0.26 -0.5 2,604,212 - CA264_11250 0.26 -0.0 2,604,213 - CA264_11250 0.26 -0.3 2,604,213 - CA264_11250 0.26 -0.3 2,604,213 - CA264_11250 0.26 +0.4 2,604,216 + CA264_11250 0.27 +0.4 2,604,216 + CA264_11250 0.27 -1.1 2,604,216 + CA264_11250 0.27 +0.1 2,604,216 + CA264_11250 0.27 -0.2 2,604,216 + CA264_11250 0.27 +0.2 2,604,216 + CA264_11250 0.27 +0.2 2,604,216 + CA264_11250 0.27 -0.7 2,604,217 - CA264_11250 0.27 +1.3 2,604,217 - CA264_11250 0.27 +0.0 2,604,217 - CA264_11250 0.27 -0.1 2,604,217 - CA264_11250 0.27 -0.1 2,604,218 + CA264_11250 0.27 -0.1 2,604,218 + CA264_11250 0.27 -0.7 2,604,218 + CA264_11250 0.27 +1.1 2,604,218 + CA264_11250 0.27 +1.1 2,604,218 + CA264_11250 0.27 +2.0 2,604,219 - CA264_11250 0.27 +0.7 2,604,219 - CA264_11250 0.27 -0.4 2,604,219 - CA264_11250 0.27 -2.2 2,604,219 - CA264_11250 0.27 -2.0 2,604,222 + CA264_11250 0.28 +0.3 2,604,222 + CA264_11250 0.28 -0.5 2,604,223 - CA264_11250 0.28 +0.6 2,604,383 - CA264_11250 0.54 -0.3 2,604,385 - CA264_11250 0.54 -0.4 2,604,388 + CA264_11250 0.55 +0.3 2,604,388 + CA264_11250 0.55 +0.1 2,604,388 + CA264_11250 0.55 -0.4 2,604,388 + CA264_11250 0.55 -1.8 2,604,388 + CA264_11250 0.55 -0.3 2,604,388 + CA264_11250 0.55 -0.0 2,604,388 + CA264_11250 0.55 -0.5 2,604,389 - CA264_11250 0.55 -0.3 2,604,389 - CA264_11250 0.55 +1.3 2,604,389 - CA264_11250 0.55 +0.8 2,604,390 + CA264_11250 0.55 -0.6 2,604,426 + CA264_11250 0.61 -0.2 2,604,426 + CA264_11250 0.61 +1.2 2,604,466 - CA264_11250 0.68 +0.1 2,604,507 - CA264_11250 0.74 -0.6 2,604,540 + CA264_11250 0.80 -0.3 2,604,540 + CA264_11250 0.80 -1.7 2,604,541 - CA264_11250 0.80 +0.2 2,604,541 - CA264_11250 0.80 +0.2 2,604,541 - CA264_11250 0.80 -0.2 2,604,542 + CA264_11250 0.80 -0.3 2,604,543 - CA264_11250 0.80 -0.7 2,604,553 + CA264_11250 0.82 +0.2 2,604,557 + CA264_11250 0.83 -1.0 2,604,558 - CA264_11250 0.83 -0.8 2,604,558 - CA264_11250 0.83 -0.4 2,604,610 + -0.6 2,604,697 + -0.1 2,604,839 + -0.3 2,604,854 + +1.8 2,604,854 + +1.3 2,604,909 + -1.4 2,604,910 - -1.4 2,604,951 + -0.7 2,604,951 + -0.5 2,605,107 + CA264_11255 0.12 -0.0 2,605,142 + CA264_11255 0.13 +0.0 2,605,152 + CA264_11255 0.14 +0.0 2,605,152 + CA264_11255 0.14 +0.1 2,605,153 - CA264_11255 0.14 -0.7 2,605,163 - CA264_11255 0.14 +0.2 2,605,189 - CA264_11255 0.16 -0.5 2,605,226 + CA264_11255 0.17 +0.9 2,605,236 - CA264_11255 0.18 +0.4 2,605,475 + CA264_11255 0.29 -0.3 2,605,475 + CA264_11255 0.29 -0.6 2,605,479 - CA264_11255 0.30 -0.4 2,605,543 + CA264_11255 0.33 +0.5 2,605,543 + CA264_11255 0.33 -0.5 2,605,543 + CA264_11255 0.33 +0.1 2,605,554 + CA264_11255 0.33 +0.4 2,605,555 - CA264_11255 0.33 +0.3 2,605,555 - CA264_11255 0.33 -1.1 2,605,557 - CA264_11255 0.33 +0.1
Or see this region's nucleotide sequence