Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10135

Experiment: m.b. benzoic 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_10130 and CA264_10135 are separated by 329 nucleotidesCA264_10135 and CA264_10140 are separated by 1 nucleotides CA264_10130: CA264_10130 - TonB-dependent receptor, at 2,349,500 to 2,351,926 _10130 CA264_10135: CA264_10135 - hypothetical protein, at 2,352,256 to 2,353,290 _10135 CA264_10140: CA264_10140 - DNA-binding response regulator, at 2,353,292 to 2,354,038 _10140 Position (kb) 2352 2353 2354Strain fitness (log2 ratio) -2 -1 0 1 2at 2351.320 kb on + strand, within CA264_10130at 2351.339 kb on - strand, within CA264_10130at 2351.376 kb on + strand, within CA264_10130at 2351.377 kb on - strand, within CA264_10130at 2351.430 kb on - strand, within CA264_10130at 2351.431 kb on + strand, within CA264_10130at 2351.431 kb on + strand, within CA264_10130at 2351.468 kb on - strand, within CA264_10130at 2351.534 kb on - strand, within CA264_10130at 2351.571 kb on - strand, within CA264_10130at 2351.574 kb on - strand, within CA264_10130at 2351.574 kb on - strand, within CA264_10130at 2351.611 kb on + strand, within CA264_10130at 2351.669 kb on + strand, within CA264_10130at 2351.694 kb on - strandat 2351.884 kb on + strandat 2351.885 kb on - strandat 2351.885 kb on - strandat 2351.927 kb on - strandat 2352.007 kb on - strandat 2352.055 kb on + strandat 2352.057 kb on + strandat 2352.106 kb on + strandat 2352.142 kb on + strandat 2352.172 kb on - strandat 2352.172 kb on - strandat 2352.175 kb on - strandat 2352.203 kb on + strandat 2352.207 kb on + strandat 2352.237 kb on - strandat 2352.282 kb on + strandat 2352.282 kb on + strandat 2352.285 kb on + strandat 2352.286 kb on - strandat 2352.306 kb on - strandat 2352.323 kb on - strandat 2352.325 kb on + strandat 2352.477 kb on - strand, within CA264_10135at 2352.490 kb on + strand, within CA264_10135at 2352.491 kb on - strand, within CA264_10135at 2352.491 kb on - strand, within CA264_10135at 2352.491 kb on - strand, within CA264_10135at 2352.500 kb on + strand, within CA264_10135at 2352.553 kb on + strand, within CA264_10135at 2352.554 kb on - strand, within CA264_10135at 2352.633 kb on + strand, within CA264_10135at 2352.634 kb on - strand, within CA264_10135at 2352.634 kb on - strand, within CA264_10135at 2352.650 kb on - strand, within CA264_10135at 2352.653 kb on - strand, within CA264_10135at 2352.653 kb on - strand, within CA264_10135at 2352.677 kb on + strand, within CA264_10135at 2352.814 kb on + strand, within CA264_10135at 2352.815 kb on - strand, within CA264_10135at 2352.854 kb on + strand, within CA264_10135at 2352.938 kb on - strand, within CA264_10135at 2353.073 kb on - strand, within CA264_10135at 2353.074 kb on + strand, within CA264_10135at 2353.101 kb on + strand, within CA264_10135at 2353.103 kb on + strand, within CA264_10135at 2353.104 kb on - strand, within CA264_10135at 2353.104 kb on - strand, within CA264_10135at 2353.137 kb on + strand, within CA264_10135at 2353.210 kb on + strandat 2353.210 kb on + strandat 2353.211 kb on - strandat 2353.278 kb on + strandat 2353.278 kb on + strandat 2353.279 kb on - strandat 2353.304 kb on - strandat 2353.304 kb on - strandat 2353.398 kb on + strand, within CA264_10140at 2353.492 kb on + strand, within CA264_10140at 2353.506 kb on + strand, within CA264_10140at 2353.535 kb on + strand, within CA264_10140at 2353.536 kb on - strand, within CA264_10140at 2353.536 kb on - strand, within CA264_10140at 2353.545 kb on - strand, within CA264_10140at 2353.551 kb on + strand, within CA264_10140at 2353.587 kb on + strand, within CA264_10140at 2353.632 kb on - strand, within CA264_10140at 2353.657 kb on + strand, within CA264_10140at 2353.657 kb on + strand, within CA264_10140at 2353.657 kb on + strand, within CA264_10140at 2353.658 kb on - strand, within CA264_10140at 2353.660 kb on - strand, within CA264_10140at 2353.660 kb on - strand, within CA264_10140at 2353.660 kb on - strand, within CA264_10140at 2353.959 kb on + strand, within CA264_10140at 2353.978 kb on + strandat 2354.036 kb on + strandat 2354.036 kb on + strandat 2354.039 kb on + strandat 2354.039 kb on + strandat 2354.039 kb on + strandat 2354.039 kb on + strandat 2354.093 kb on + strandat 2354.144 kb on + strandat 2354.177 kb on - strandat 2354.180 kb on + strandat 2354.249 kb on - strandat 2354.271 kb on + strandat 2354.278 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
remove
2,351,320 + CA264_10130 0.75 +1.4
2,351,339 - CA264_10130 0.76 +0.1
2,351,376 + CA264_10130 0.77 +0.2
2,351,377 - CA264_10130 0.77 +0.2
2,351,430 - CA264_10130 0.80 -0.3
2,351,431 + CA264_10130 0.80 -0.1
2,351,431 + CA264_10130 0.80 +0.4
2,351,468 - CA264_10130 0.81 -1.7
2,351,534 - CA264_10130 0.84 +1.3
2,351,571 - CA264_10130 0.85 -2.1
2,351,574 - CA264_10130 0.85 -0.5
2,351,574 - CA264_10130 0.85 -0.4
2,351,611 + CA264_10130 0.87 +1.5
2,351,669 + CA264_10130 0.89 -0.5
2,351,694 - -0.0
2,351,884 + +0.9
2,351,885 - -0.2
2,351,885 - -0.4
2,351,927 - -0.4
2,352,007 - +0.2
2,352,055 + -0.2
2,352,057 + +0.7
2,352,106 + +0.9
2,352,142 + -0.4
2,352,172 - +0.0
2,352,172 - -0.9
2,352,175 - -0.5
2,352,203 + +1.7
2,352,207 + -1.3
2,352,237 - -0.1
2,352,282 + +2.6
2,352,282 + -0.2
2,352,285 + -0.8
2,352,286 - +0.5
2,352,306 - -0.2
2,352,323 - -0.0
2,352,325 + +0.1
2,352,477 - CA264_10135 0.21 -0.3
2,352,490 + CA264_10135 0.23 +0.6
2,352,491 - CA264_10135 0.23 +0.1
2,352,491 - CA264_10135 0.23 +0.1
2,352,491 - CA264_10135 0.23 +0.6
2,352,500 + CA264_10135 0.24 +0.6
2,352,553 + CA264_10135 0.29 +1.4
2,352,554 - CA264_10135 0.29 -0.1
2,352,633 + CA264_10135 0.36 +0.3
2,352,634 - CA264_10135 0.37 +0.1
2,352,634 - CA264_10135 0.37 -1.1
2,352,650 - CA264_10135 0.38 -0.2
2,352,653 - CA264_10135 0.38 -0.3
2,352,653 - CA264_10135 0.38 +0.3
2,352,677 + CA264_10135 0.41 -0.6
2,352,814 + CA264_10135 0.54 +1.0
2,352,815 - CA264_10135 0.54 -0.3
2,352,854 + CA264_10135 0.58 -0.0
2,352,938 - CA264_10135 0.66 -0.4
2,353,073 - CA264_10135 0.79 +0.7
2,353,074 + CA264_10135 0.79 +0.1
2,353,101 + CA264_10135 0.82 +0.2
2,353,103 + CA264_10135 0.82 +0.2
2,353,104 - CA264_10135 0.82 -0.1
2,353,104 - CA264_10135 0.82 +1.1
2,353,137 + CA264_10135 0.85 -0.7
2,353,210 + +0.1
2,353,210 + -0.3
2,353,211 - +0.1
2,353,278 + +0.3
2,353,278 + +0.1
2,353,279 - -0.1
2,353,304 - +0.2
2,353,304 - +0.2
2,353,398 + CA264_10140 0.14 +0.0
2,353,492 + CA264_10140 0.27 +0.4
2,353,506 + CA264_10140 0.29 -0.1
2,353,535 + CA264_10140 0.33 -0.4
2,353,536 - CA264_10140 0.33 +1.7
2,353,536 - CA264_10140 0.33 +0.3
2,353,545 - CA264_10140 0.34 -0.2
2,353,551 + CA264_10140 0.35 +0.2
2,353,587 + CA264_10140 0.39 +0.1
2,353,632 - CA264_10140 0.46 -0.1
2,353,657 + CA264_10140 0.49 +0.9
2,353,657 + CA264_10140 0.49 +0.7
2,353,657 + CA264_10140 0.49 -0.7
2,353,658 - CA264_10140 0.49 -0.6
2,353,660 - CA264_10140 0.49 +0.8
2,353,660 - CA264_10140 0.49 -0.1
2,353,660 - CA264_10140 0.49 +0.1
2,353,959 + CA264_10140 0.89 -0.7
2,353,978 + +0.1
2,354,036 + +0.2
2,354,036 + -0.0
2,354,039 + -0.4
2,354,039 + -0.3
2,354,039 + -1.1
2,354,039 + +0.7
2,354,093 + +0.0
2,354,144 + +0.1
2,354,177 - -0.5
2,354,180 + -0.3
2,354,249 - +0.2
2,354,271 + +1.1
2,354,278 + -0.1

Or see this region's nucleotide sequence