Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09460

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09455 and CA264_09460 are separated by 56 nucleotidesCA264_09460 and CA264_09465 are separated by 181 nucleotides CA264_09455: CA264_09455 - LysR family transcriptional regulator, at 2,208,722 to 2,209,615 _09455 CA264_09460: CA264_09460 - hypothetical protein, at 2,209,672 to 2,210,130 _09460 CA264_09465: CA264_09465 - tungsten formylmethanofuran dehydrogenase, at 2,210,312 to 2,211,373 _09465 Position (kb) 2209 2210 2211Strain fitness (log2 ratio) -1 0 1 2at 2208.683 kb on - strandat 2208.720 kb on - strandat 2208.803 kb on - strandat 2208.960 kb on + strand, within CA264_09455at 2208.961 kb on - strand, within CA264_09455at 2208.961 kb on - strand, within CA264_09455at 2208.976 kb on - strand, within CA264_09455at 2208.976 kb on - strand, within CA264_09455at 2208.995 kb on - strand, within CA264_09455at 2209.021 kb on + strand, within CA264_09455at 2209.028 kb on + strand, within CA264_09455at 2209.036 kb on + strand, within CA264_09455at 2209.036 kb on + strand, within CA264_09455at 2209.037 kb on - strand, within CA264_09455at 2209.054 kb on + strand, within CA264_09455at 2209.057 kb on + strand, within CA264_09455at 2209.057 kb on + strand, within CA264_09455at 2209.057 kb on + strand, within CA264_09455at 2209.057 kb on + strand, within CA264_09455at 2209.057 kb on + strand, within CA264_09455at 2209.058 kb on - strand, within CA264_09455at 2209.058 kb on - strand, within CA264_09455at 2209.058 kb on - strand, within CA264_09455at 2209.080 kb on + strand, within CA264_09455at 2209.081 kb on - strandat 2209.081 kb on - strand, within CA264_09455at 2209.192 kb on + strand, within CA264_09455at 2209.202 kb on + strand, within CA264_09455at 2209.202 kb on + strand, within CA264_09455at 2209.328 kb on - strand, within CA264_09455at 2209.503 kb on - strand, within CA264_09455at 2209.503 kb on - strand, within CA264_09455at 2209.504 kb on + strand, within CA264_09455at 2209.518 kb on - strand, within CA264_09455at 2209.591 kb on + strandat 2209.592 kb on - strandat 2209.595 kb on + strandat 2209.595 kb on + strandat 2209.596 kb on - strandat 2209.599 kb on + strandat 2209.641 kb on - strandat 2209.655 kb on + strandat 2209.659 kb on + strandat 2209.659 kb on + strandat 2209.659 kb on + strandat 2209.659 kb on + strandat 2209.714 kb on - strandat 2209.721 kb on + strand, within CA264_09460at 2209.721 kb on + strand, within CA264_09460at 2209.799 kb on - strand, within CA264_09460at 2209.799 kb on - strand, within CA264_09460at 2209.800 kb on + strand, within CA264_09460at 2209.801 kb on - strand, within CA264_09460at 2209.801 kb on - strand, within CA264_09460at 2209.942 kb on + strand, within CA264_09460at 2209.943 kb on - strand, within CA264_09460at 2209.943 kb on - strand, within CA264_09460at 2209.944 kb on + strand, within CA264_09460at 2209.944 kb on + strand, within CA264_09460at 2209.944 kb on + strand, within CA264_09460at 2209.945 kb on - strand, within CA264_09460at 2209.977 kb on + strand, within CA264_09460at 2209.993 kb on - strand, within CA264_09460at 2210.016 kb on - strand, within CA264_09460at 2210.023 kb on + strand, within CA264_09460at 2210.024 kb on - strand, within CA264_09460at 2210.024 kb on - strand, within CA264_09460at 2210.058 kb on + strand, within CA264_09460at 2210.059 kb on - strand, within CA264_09460at 2210.065 kb on + strand, within CA264_09460at 2210.094 kb on - strandat 2210.129 kb on - strandat 2210.178 kb on + strandat 2210.179 kb on - strandat 2210.179 kb on - strandat 2210.228 kb on + strandat 2210.235 kb on - strandat 2210.235 kb on - strandat 2210.283 kb on - strandat 2210.284 kb on + strandat 2210.284 kb on + strandat 2210.284 kb on + strandat 2210.285 kb on - strandat 2210.285 kb on - strandat 2210.285 kb on - strandat 2210.311 kb on + strandat 2210.421 kb on + strand, within CA264_09465at 2210.500 kb on - strand, within CA264_09465at 2210.500 kb on - strand, within CA264_09465at 2210.593 kb on + strand, within CA264_09465at 2210.596 kb on - strand, within CA264_09465at 2210.662 kb on + strand, within CA264_09465at 2210.663 kb on - strand, within CA264_09465at 2210.667 kb on - strand, within CA264_09465at 2210.679 kb on + strand, within CA264_09465at 2210.689 kb on + strand, within CA264_09465at 2210.689 kb on + strand, within CA264_09465at 2210.691 kb on + strand, within CA264_09465at 2210.774 kb on - strand, within CA264_09465at 2210.791 kb on + strand, within CA264_09465at 2210.792 kb on - strand, within CA264_09465at 2210.792 kb on - strand, within CA264_09465at 2210.792 kb on - strand, within CA264_09465at 2210.792 kb on - strand, within CA264_09465at 2210.833 kb on - strand, within CA264_09465at 2210.833 kb on - strand, within CA264_09465at 2210.839 kb on + strand, within CA264_09465at 2210.839 kb on + strand, within CA264_09465at 2210.839 kb on + strand, within CA264_09465at 2210.840 kb on - strand, within CA264_09465at 2210.935 kb on - strand, within CA264_09465at 2210.960 kb on - strand, within CA264_09465at 2211.102 kb on + strand, within CA264_09465

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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2,208,683 - -0.7
2,208,720 - -0.6
2,208,803 - -0.8
2,208,960 + CA264_09455 0.27 -0.3
2,208,961 - CA264_09455 0.27 +0.4
2,208,961 - CA264_09455 0.27 +0.1
2,208,976 - CA264_09455 0.28 -0.5
2,208,976 - CA264_09455 0.28 -0.2
2,208,995 - CA264_09455 0.31 -0.5
2,209,021 + CA264_09455 0.33 -0.6
2,209,028 + CA264_09455 0.34 +0.4
2,209,036 + CA264_09455 0.35 +0.1
2,209,036 + CA264_09455 0.35 +0.8
2,209,037 - CA264_09455 0.35 -0.6
2,209,054 + CA264_09455 0.37 +0.4
2,209,057 + CA264_09455 0.37 +0.9
2,209,057 + CA264_09455 0.37 +0.5
2,209,057 + CA264_09455 0.37 +0.5
2,209,057 + CA264_09455 0.37 +0.0
2,209,057 + CA264_09455 0.37 +0.3
2,209,058 - CA264_09455 0.38 +0.5
2,209,058 - CA264_09455 0.38 -0.2
2,209,058 - CA264_09455 0.38 +0.5
2,209,080 + CA264_09455 0.40 -0.8
2,209,081 - +1.3
2,209,081 - CA264_09455 0.40 -1.2
2,209,192 + CA264_09455 0.53 +0.2
2,209,202 + CA264_09455 0.54 +0.1
2,209,202 + CA264_09455 0.54 +0.1
2,209,328 - CA264_09455 0.68 +0.3
2,209,503 - CA264_09455 0.87 +0.6
2,209,503 - CA264_09455 0.87 +0.0
2,209,504 + CA264_09455 0.87 -0.1
2,209,518 - CA264_09455 0.89 -1.1
2,209,591 + +1.6
2,209,592 - -0.6
2,209,595 + -1.5
2,209,595 + +0.4
2,209,596 - +0.8
2,209,599 + -0.1
2,209,641 - +1.1
2,209,655 + -0.3
2,209,659 + +1.1
2,209,659 + +0.3
2,209,659 + -0.7
2,209,659 + -0.2
2,209,714 - +1.8
2,209,721 + CA264_09460 0.11 -0.8
2,209,721 + CA264_09460 0.11 +0.0
2,209,799 - CA264_09460 0.28 +0.1
2,209,799 - CA264_09460 0.28 -0.1
2,209,800 + CA264_09460 0.28 -0.8
2,209,801 - CA264_09460 0.28 -0.6
2,209,801 - CA264_09460 0.28 +0.2
2,209,942 + CA264_09460 0.59 -0.7
2,209,943 - CA264_09460 0.59 -1.3
2,209,943 - CA264_09460 0.59 -0.2
2,209,944 + CA264_09460 0.59 -0.5
2,209,944 + CA264_09460 0.59 +1.1
2,209,944 + CA264_09460 0.59 -0.5
2,209,945 - CA264_09460 0.59 -1.0
2,209,977 + CA264_09460 0.66 -0.1
2,209,993 - CA264_09460 0.70 -0.7
2,210,016 - CA264_09460 0.75 -1.3
2,210,023 + CA264_09460 0.76 -1.1
2,210,024 - CA264_09460 0.77 -0.1
2,210,024 - CA264_09460 0.77 +1.5
2,210,058 + CA264_09460 0.84 -0.9
2,210,059 - CA264_09460 0.84 -0.6
2,210,065 + CA264_09460 0.86 -0.3
2,210,094 - -1.4
2,210,129 - -0.7
2,210,178 + +0.6
2,210,179 - +0.8
2,210,179 - -1.6
2,210,228 + -0.9
2,210,235 - +0.5
2,210,235 - -0.3
2,210,283 - -0.4
2,210,284 + +0.8
2,210,284 + -0.5
2,210,284 + -0.3
2,210,285 - -1.1
2,210,285 - -0.2
2,210,285 - -0.1
2,210,311 + +0.7
2,210,421 + CA264_09465 0.10 -0.2
2,210,500 - CA264_09465 0.18 -0.2
2,210,500 - CA264_09465 0.18 -0.1
2,210,593 + CA264_09465 0.26 +0.3
2,210,596 - CA264_09465 0.27 +0.1
2,210,662 + CA264_09465 0.33 +0.3
2,210,663 - CA264_09465 0.33 -1.0
2,210,667 - CA264_09465 0.33 +0.1
2,210,679 + CA264_09465 0.35 +0.8
2,210,689 + CA264_09465 0.35 -0.7
2,210,689 + CA264_09465 0.35 -0.4
2,210,691 + CA264_09465 0.36 -0.3
2,210,774 - CA264_09465 0.44 +0.6
2,210,791 + CA264_09465 0.45 -0.0
2,210,792 - CA264_09465 0.45 -0.2
2,210,792 - CA264_09465 0.45 -1.3
2,210,792 - CA264_09465 0.45 +1.0
2,210,792 - CA264_09465 0.45 +0.4
2,210,833 - CA264_09465 0.49 +0.2
2,210,833 - CA264_09465 0.49 -0.5
2,210,839 + CA264_09465 0.50 +0.2
2,210,839 + CA264_09465 0.50 +0.0
2,210,839 + CA264_09465 0.50 -0.2
2,210,840 - CA264_09465 0.50 +0.9
2,210,935 - CA264_09465 0.59 -1.3
2,210,960 - CA264_09465 0.61 -0.0
2,211,102 + CA264_09465 0.74 +0.2

Or see this region's nucleotide sequence