Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09360

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09355 and CA264_09360 are separated by 109 nucleotidesCA264_09360 and CA264_09365 are separated by 55 nucleotides CA264_09355: CA264_09355 - nitroreductase, at 2,187,052 to 2,187,639 _09355 CA264_09360: CA264_09360 - phosphoglycerate kinase, at 2,187,749 to 2,188,948 _09360 CA264_09365: CA264_09365 - 4-hydroxybutyrate CoA-transferase, at 2,189,004 to 2,190,293 _09365 Position (kb) 2187 2188 2189Strain fitness (log2 ratio) -3 -2 -1 0 1at 2186.838 kb on + strandat 2186.995 kb on - strandat 2186.995 kb on - strandat 2187.000 kb on + strandat 2187.072 kb on + strandat 2187.074 kb on + strandat 2187.086 kb on + strandat 2187.086 kb on + strandat 2187.213 kb on + strand, within CA264_09355at 2187.218 kb on + strand, within CA264_09355at 2187.221 kb on - strand, within CA264_09355at 2187.266 kb on + strand, within CA264_09355at 2187.291 kb on + strand, within CA264_09355at 2187.472 kb on + strand, within CA264_09355at 2187.473 kb on - strand, within CA264_09355at 2187.528 kb on - strand, within CA264_09355at 2187.604 kb on - strandat 2187.657 kb on + strandat 2187.658 kb on - strandat 2187.658 kb on - strandat 2187.658 kb on - strandat 2187.658 kb on - strandat 2187.660 kb on + strandat 2187.663 kb on - strandat 2187.677 kb on - strandat 2187.957 kb on - strand, within CA264_09360at 2188.418 kb on + strand, within CA264_09360at 2188.584 kb on + strand, within CA264_09360at 2188.952 kb on - strandat 2188.990 kb on - strandat 2188.998 kb on + strandat 2188.998 kb on + strandat 2189.002 kb on + strandat 2189.003 kb on - strandat 2189.003 kb on - strandat 2189.015 kb on + strandat 2189.081 kb on - strandat 2189.153 kb on - strand, within CA264_09365at 2189.176 kb on - strand, within CA264_09365at 2189.176 kb on - strand, within CA264_09365at 2189.206 kb on - strand, within CA264_09365at 2189.226 kb on - strand, within CA264_09365at 2189.330 kb on + strand, within CA264_09365at 2189.598 kb on + strand, within CA264_09365at 2189.599 kb on - strand, within CA264_09365at 2189.600 kb on + strand, within CA264_09365at 2189.687 kb on + strand, within CA264_09365at 2189.699 kb on + strand, within CA264_09365at 2189.768 kb on + strand, within CA264_09365at 2189.769 kb on - strand, within CA264_09365at 2189.769 kb on - strand, within CA264_09365at 2189.773 kb on - strand, within CA264_09365at 2189.773 kb on - strand, within CA264_09365at 2189.874 kb on + strand, within CA264_09365at 2189.875 kb on - strand, within CA264_09365at 2189.914 kb on + strand, within CA264_09365

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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2,186,838 + +0.2
2,186,995 - -0.5
2,186,995 - +0.0
2,187,000 + +1.5
2,187,072 + +1.4
2,187,074 + +0.1
2,187,086 + -0.4
2,187,086 + -0.7
2,187,213 + CA264_09355 0.27 +0.2
2,187,218 + CA264_09355 0.28 +0.1
2,187,221 - CA264_09355 0.29 -0.4
2,187,266 + CA264_09355 0.36 -2.1
2,187,291 + CA264_09355 0.41 -0.0
2,187,472 + CA264_09355 0.71 +0.8
2,187,473 - CA264_09355 0.72 +1.0
2,187,528 - CA264_09355 0.81 -0.3
2,187,604 - -0.7
2,187,657 + -0.0
2,187,658 - +0.0
2,187,658 - +0.1
2,187,658 - +0.8
2,187,658 - -0.2
2,187,660 + +0.4
2,187,663 - +0.2
2,187,677 - -0.1
2,187,957 - CA264_09360 0.17 -1.9
2,188,418 + CA264_09360 0.56 -2.8
2,188,584 + CA264_09360 0.70 -0.6
2,188,952 - +0.2
2,188,990 - +0.4
2,188,998 + -0.3
2,188,998 + +0.2
2,189,002 + -0.6
2,189,003 - -0.4
2,189,003 - -0.3
2,189,015 + +0.2
2,189,081 - +1.4
2,189,153 - CA264_09365 0.12 +0.9
2,189,176 - CA264_09365 0.13 -0.3
2,189,176 - CA264_09365 0.13 -0.9
2,189,206 - CA264_09365 0.16 +0.1
2,189,226 - CA264_09365 0.17 -1.6
2,189,330 + CA264_09365 0.25 +1.1
2,189,598 + CA264_09365 0.46 -0.4
2,189,599 - CA264_09365 0.46 +0.1
2,189,600 + CA264_09365 0.46 -0.5
2,189,687 + CA264_09365 0.53 -0.4
2,189,699 + CA264_09365 0.54 +0.8
2,189,768 + CA264_09365 0.59 +0.2
2,189,769 - CA264_09365 0.59 -0.8
2,189,769 - CA264_09365 0.59 -0.3
2,189,773 - CA264_09365 0.60 -1.1
2,189,773 - CA264_09365 0.60 -0.0
2,189,874 + CA264_09365 0.67 -0.1
2,189,875 - CA264_09365 0.68 -0.1
2,189,914 + CA264_09365 0.71 +0.5

Or see this region's nucleotide sequence