Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09035

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09030 and CA264_09035 are separated by 128 nucleotidesCA264_09035 and CA264_09040 are separated by 72 nucleotides CA264_09030: CA264_09030 - glycoside hydrolase family 31, at 2,109,614 to 2,112,085 _09030 CA264_09035: CA264_09035 - hypothetical protein, at 2,112,214 to 2,113,275 _09035 CA264_09040: CA264_09040 - RagB/SusD family nutrient uptake outer membrane protein, at 2,113,348 to 2,114,940 _09040 Position (kb) 2112 2113 2114Strain fitness (log2 ratio) -2 -1 0 1 2at 2111.235 kb on - strand, within CA264_09030at 2111.253 kb on + strand, within CA264_09030at 2111.253 kb on + strand, within CA264_09030at 2111.253 kb on + strandat 2111.253 kb on + strand, within CA264_09030at 2111.325 kb on + strand, within CA264_09030at 2111.326 kb on - strand, within CA264_09030at 2111.326 kb on - strand, within CA264_09030at 2111.332 kb on + strand, within CA264_09030at 2111.333 kb on - strand, within CA264_09030at 2111.333 kb on - strand, within CA264_09030at 2111.333 kb on - strand, within CA264_09030at 2111.338 kb on + strand, within CA264_09030at 2111.358 kb on + strand, within CA264_09030at 2111.367 kb on + strand, within CA264_09030at 2111.368 kb on - strand, within CA264_09030at 2111.464 kb on + strand, within CA264_09030at 2111.497 kb on - strand, within CA264_09030at 2111.497 kb on - strand, within CA264_09030at 2111.497 kb on - strand, within CA264_09030at 2111.514 kb on + strand, within CA264_09030at 2111.514 kb on + strand, within CA264_09030at 2111.515 kb on - strand, within CA264_09030at 2111.536 kb on + strand, within CA264_09030at 2111.568 kb on + strand, within CA264_09030at 2111.644 kb on + strand, within CA264_09030at 2111.645 kb on - strand, within CA264_09030at 2111.645 kb on - strand, within CA264_09030at 2111.646 kb on + strand, within CA264_09030at 2111.647 kb on - strand, within CA264_09030at 2111.647 kb on - strand, within CA264_09030at 2111.647 kb on - strand, within CA264_09030at 2111.647 kb on - strand, within CA264_09030at 2111.666 kb on + strand, within CA264_09030at 2111.705 kb on + strand, within CA264_09030at 2111.785 kb on + strand, within CA264_09030at 2111.785 kb on + strand, within CA264_09030at 2111.785 kb on + strand, within CA264_09030at 2111.786 kb on - strand, within CA264_09030at 2111.875 kb on + strandat 2111.891 kb on + strandat 2111.892 kb on - strandat 2111.915 kb on + strandat 2111.915 kb on + strandat 2111.915 kb on + strandat 2111.916 kb on - strandat 2111.916 kb on - strandat 2111.916 kb on - strandat 2111.921 kb on + strandat 2111.921 kb on + strandat 2111.922 kb on - strandat 2111.922 kb on - strandat 2111.922 kb on - strandat 2111.945 kb on - strandat 2111.954 kb on + strandat 2111.954 kb on + strandat 2111.955 kb on - strandat 2112.034 kb on + strandat 2112.034 kb on + strandat 2112.110 kb on + strandat 2112.166 kb on + strandat 2112.167 kb on - strandat 2112.178 kb on - strandat 2112.187 kb on + strandat 2112.187 kb on + strandat 2112.187 kb on + strandat 2112.188 kb on - strandat 2112.193 kb on + strandat 2112.194 kb on - strandat 2112.194 kb on - strandat 2112.225 kb on + strandat 2112.225 kb on + strandat 2112.225 kb on + strandat 2112.226 kb on - strandat 2112.233 kb on + strandat 2112.234 kb on - strandat 2112.234 kb on - strandat 2112.237 kb on + strandat 2112.238 kb on - strandat 2112.238 kb on - strandat 2112.240 kb on - strandat 2112.240 kb on - strandat 2112.256 kb on + strandat 2112.267 kb on + strandat 2112.268 kb on - strandat 2112.268 kb on - strandat 2112.268 kb on - strandat 2112.275 kb on + strandat 2112.298 kb on + strandat 2112.298 kb on + strandat 2112.299 kb on - strandat 2112.299 kb on - strandat 2112.300 kb on + strandat 2112.303 kb on + strandat 2112.322 kb on + strand, within CA264_09035at 2112.323 kb on - strand, within CA264_09035at 2112.327 kb on - strand, within CA264_09035at 2112.443 kb on + strand, within CA264_09035at 2112.444 kb on - strand, within CA264_09035at 2112.612 kb on + strand, within CA264_09035at 2112.613 kb on - strand, within CA264_09035at 2112.616 kb on + strand, within CA264_09035at 2112.616 kb on + strand, within CA264_09035at 2112.616 kb on + strand, within CA264_09035at 2112.617 kb on - strand, within CA264_09035at 2112.617 kb on - strand, within CA264_09035at 2112.617 kb on - strand, within CA264_09035at 2112.644 kb on + strand, within CA264_09035at 2112.645 kb on - strand, within CA264_09035at 2112.707 kb on + strand, within CA264_09035at 2112.707 kb on + strand, within CA264_09035at 2112.707 kb on + strand, within CA264_09035at 2112.708 kb on - strand, within CA264_09035at 2112.708 kb on - strand, within CA264_09035at 2112.708 kb on - strand, within CA264_09035at 2112.714 kb on - strand, within CA264_09035at 2112.797 kb on + strand, within CA264_09035at 2112.808 kb on - strand, within CA264_09035at 2112.809 kb on + strand, within CA264_09035at 2112.871 kb on + strand, within CA264_09035at 2112.895 kb on + strand, within CA264_09035at 2112.909 kb on + strand, within CA264_09035at 2112.910 kb on - strand, within CA264_09035at 2112.910 kb on - strand, within CA264_09035at 2112.913 kb on - strand, within CA264_09035at 2113.039 kb on - strand, within CA264_09035at 2113.106 kb on - strand, within CA264_09035at 2113.162 kb on + strand, within CA264_09035at 2113.163 kb on - strand, within CA264_09035at 2113.223 kb on - strandat 2113.223 kb on - strandat 2113.250 kb on - strandat 2113.258 kb on - strandat 2113.349 kb on + strandat 2113.350 kb on - strandat 2113.353 kb on - strandat 2113.496 kb on + strandat 2113.533 kb on + strand, within CA264_09040at 2113.561 kb on - strand, within CA264_09040at 2113.616 kb on + strand, within CA264_09040at 2113.617 kb on - strand, within CA264_09040at 2113.639 kb on + strand, within CA264_09040at 2113.639 kb on + strand, within CA264_09040at 2113.640 kb on - strand, within CA264_09040at 2113.701 kb on - strand, within CA264_09040at 2113.701 kb on - strand, within CA264_09040at 2113.709 kb on + strand, within CA264_09040at 2113.712 kb on - strand, within CA264_09040at 2113.712 kb on - strand, within CA264_09040at 2113.712 kb on - strand, within CA264_09040at 2113.788 kb on + strand, within CA264_09040at 2113.789 kb on - strand, within CA264_09040at 2113.806 kb on + strand, within CA264_09040at 2113.864 kb on - strand, within CA264_09040at 2113.914 kb on + strand, within CA264_09040at 2113.915 kb on - strand, within CA264_09040at 2113.916 kb on + strand, within CA264_09040at 2113.917 kb on - strand, within CA264_09040at 2114.025 kb on - strand, within CA264_09040at 2114.170 kb on - strand, within CA264_09040at 2114.170 kb on - strand, within CA264_09040at 2114.170 kb on - strand, within CA264_09040at 2114.171 kb on + strand, within CA264_09040at 2114.172 kb on - strand, within CA264_09040at 2114.172 kb on - strand, within CA264_09040at 2114.175 kb on + strand, within CA264_09040at 2114.175 kb on + strand, within CA264_09040at 2114.189 kb on + strand, within CA264_09040at 2114.190 kb on - strand, within CA264_09040at 2114.208 kb on - strand, within CA264_09040at 2114.208 kb on - strand, within CA264_09040

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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2,111,235 - CA264_09030 0.66 -0.1
2,111,253 + CA264_09030 0.66 -0.4
2,111,253 + CA264_09030 0.66 +1.4
2,111,253 + -0.1
2,111,253 + CA264_09030 0.66 -1.1
2,111,325 + CA264_09030 0.69 -0.2
2,111,326 - CA264_09030 0.69 -0.2
2,111,326 - CA264_09030 0.69 -0.7
2,111,332 + CA264_09030 0.69 -0.3
2,111,333 - CA264_09030 0.70 -0.6
2,111,333 - CA264_09030 0.70 +0.1
2,111,333 - CA264_09030 0.70 -1.0
2,111,338 + CA264_09030 0.70 -0.2
2,111,358 + CA264_09030 0.71 +0.1
2,111,367 + CA264_09030 0.71 -0.6
2,111,368 - CA264_09030 0.71 -0.6
2,111,464 + CA264_09030 0.75 -0.2
2,111,497 - CA264_09030 0.76 -0.1
2,111,497 - CA264_09030 0.76 -1.7
2,111,497 - CA264_09030 0.76 -0.4
2,111,514 + CA264_09030 0.77 -2.0
2,111,514 + CA264_09030 0.77 -0.3
2,111,515 - CA264_09030 0.77 -0.7
2,111,536 + CA264_09030 0.78 +0.2
2,111,568 + CA264_09030 0.79 +0.9
2,111,644 + CA264_09030 0.82 -1.0
2,111,645 - CA264_09030 0.82 -0.0
2,111,645 - CA264_09030 0.82 -1.1
2,111,646 + CA264_09030 0.82 +0.6
2,111,647 - CA264_09030 0.82 +0.1
2,111,647 - CA264_09030 0.82 +0.0
2,111,647 - CA264_09030 0.82 -1.0
2,111,647 - CA264_09030 0.82 +0.4
2,111,666 + CA264_09030 0.83 +0.4
2,111,705 + CA264_09030 0.85 +0.0
2,111,785 + CA264_09030 0.88 -1.5
2,111,785 + CA264_09030 0.88 -0.5
2,111,785 + CA264_09030 0.88 -0.0
2,111,786 - CA264_09030 0.88 +0.2
2,111,875 + -0.4
2,111,891 + -1.1
2,111,892 - -0.2
2,111,915 + +0.8
2,111,915 + +0.6
2,111,915 + -0.4
2,111,916 - -0.0
2,111,916 - -0.2
2,111,916 - +0.2
2,111,921 + -0.2
2,111,921 + +0.3
2,111,922 - +0.3
2,111,922 - -0.1
2,111,922 - -2.1
2,111,945 - +1.2
2,111,954 + -1.7
2,111,954 + -0.3
2,111,955 - +0.1
2,112,034 + -0.8
2,112,034 + +0.4
2,112,110 + +0.4
2,112,166 + -0.1
2,112,167 - -0.4
2,112,178 - -0.2
2,112,187 + -0.9
2,112,187 + +0.0
2,112,187 + +0.8
2,112,188 - +0.4
2,112,193 + -0.5
2,112,194 - -0.3
2,112,194 - -0.2
2,112,225 + -0.2
2,112,225 + -0.0
2,112,225 + +0.3
2,112,226 - +0.2
2,112,233 + -0.3
2,112,234 - +0.6
2,112,234 - -0.0
2,112,237 + -0.4
2,112,238 - -0.5
2,112,238 - -0.7
2,112,240 - +0.0
2,112,240 - +1.3
2,112,256 + +0.1
2,112,267 + -0.1
2,112,268 - +0.5
2,112,268 - -0.9
2,112,268 - +0.6
2,112,275 + +0.0
2,112,298 + +0.2
2,112,298 + -0.1
2,112,299 - -0.5
2,112,299 - -0.2
2,112,300 + +1.6
2,112,303 + +0.4
2,112,322 + CA264_09035 0.10 -0.4
2,112,323 - CA264_09035 0.10 -0.5
2,112,327 - CA264_09035 0.11 -0.4
2,112,443 + CA264_09035 0.22 -0.2
2,112,444 - CA264_09035 0.22 -0.8
2,112,612 + CA264_09035 0.37 +0.1
2,112,613 - CA264_09035 0.38 -1.2
2,112,616 + CA264_09035 0.38 -1.5
2,112,616 + CA264_09035 0.38 +0.6
2,112,616 + CA264_09035 0.38 -0.1
2,112,617 - CA264_09035 0.38 -0.3
2,112,617 - CA264_09035 0.38 -0.0
2,112,617 - CA264_09035 0.38 -1.5
2,112,644 + CA264_09035 0.40 +0.2
2,112,645 - CA264_09035 0.41 -0.5
2,112,707 + CA264_09035 0.46 +0.0
2,112,707 + CA264_09035 0.46 +1.5
2,112,707 + CA264_09035 0.46 -0.2
2,112,708 - CA264_09035 0.47 +0.4
2,112,708 - CA264_09035 0.47 -1.3
2,112,708 - CA264_09035 0.47 -0.2
2,112,714 - CA264_09035 0.47 -0.2
2,112,797 + CA264_09035 0.55 -1.5
2,112,808 - CA264_09035 0.56 +0.1
2,112,809 + CA264_09035 0.56 +0.9
2,112,871 + CA264_09035 0.62 -1.0
2,112,895 + CA264_09035 0.64 -1.3
2,112,909 + CA264_09035 0.65 +0.6
2,112,910 - CA264_09035 0.66 +0.0
2,112,910 - CA264_09035 0.66 -0.7
2,112,913 - CA264_09035 0.66 -1.2
2,113,039 - CA264_09035 0.78 -0.2
2,113,106 - CA264_09035 0.84 -1.5
2,113,162 + CA264_09035 0.89 -1.8
2,113,163 - CA264_09035 0.89 -0.2
2,113,223 - -0.6
2,113,223 - -0.2
2,113,250 - -0.4
2,113,258 - -0.6
2,113,349 + -0.4
2,113,350 - -0.8
2,113,353 - +0.4
2,113,496 + +1.2
2,113,533 + CA264_09040 0.12 -0.2
2,113,561 - CA264_09040 0.13 -0.7
2,113,616 + CA264_09040 0.17 -0.4
2,113,617 - CA264_09040 0.17 +0.1
2,113,639 + CA264_09040 0.18 +0.7
2,113,639 + CA264_09040 0.18 +0.1
2,113,640 - CA264_09040 0.18 -0.6
2,113,701 - CA264_09040 0.22 -0.5
2,113,701 - CA264_09040 0.22 -2.2
2,113,709 + CA264_09040 0.23 -0.2
2,113,712 - CA264_09040 0.23 -0.4
2,113,712 - CA264_09040 0.23 -1.2
2,113,712 - CA264_09040 0.23 -0.4
2,113,788 + CA264_09040 0.28 -0.2
2,113,789 - CA264_09040 0.28 +1.4
2,113,806 + CA264_09040 0.29 +0.5
2,113,864 - CA264_09040 0.32 -0.4
2,113,914 + CA264_09040 0.36 +0.5
2,113,915 - CA264_09040 0.36 +0.1
2,113,916 + CA264_09040 0.36 +1.4
2,113,917 - CA264_09040 0.36 +0.2
2,114,025 - CA264_09040 0.42 +0.1
2,114,170 - CA264_09040 0.52 +0.5
2,114,170 - CA264_09040 0.52 +2.7
2,114,170 - CA264_09040 0.52 -0.4
2,114,171 + CA264_09040 0.52 +0.6
2,114,172 - CA264_09040 0.52 +0.1
2,114,172 - CA264_09040 0.52 +1.0
2,114,175 + CA264_09040 0.52 -0.2
2,114,175 + CA264_09040 0.52 -1.4
2,114,189 + CA264_09040 0.53 +0.1
2,114,190 - CA264_09040 0.53 -0.8
2,114,208 - CA264_09040 0.54 +0.5
2,114,208 - CA264_09040 0.54 +1.5

Or see this region's nucleotide sequence