Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08855

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08850 and CA264_08855 are separated by 102 nucleotidesCA264_08855 and CA264_08860 are separated by 59 nucleotidesCA264_08860 and CA264_08865 are separated by 74 nucleotides CA264_08850: CA264_08850 - gluconolaconase, at 2,067,228 to 2,068,103 _08850 CA264_08855: CA264_08855 - DUF1835 domain-containing protein, at 2,068,206 to 2,069,123 _08855 CA264_08860: CA264_08860 - hypothetical protein, at 2,069,183 to 2,069,584 _08860 CA264_08865: CA264_08865 - formimidoylglutamase, at 2,069,659 to 2,070,633 _08865 Position (kb) 2068 2069 2070Strain fitness (log2 ratio) -2 -1 0 1 2at 2067.227 kb on + strandat 2067.228 kb on - strandat 2067.269 kb on + strandat 2067.296 kb on + strandat 2067.381 kb on + strand, within CA264_08850at 2067.401 kb on + strand, within CA264_08850at 2067.401 kb on + strand, within CA264_08850at 2067.495 kb on + strand, within CA264_08850at 2067.552 kb on + strand, within CA264_08850at 2067.553 kb on - strand, within CA264_08850at 2067.553 kb on - strand, within CA264_08850at 2067.605 kb on - strand, within CA264_08850at 2067.615 kb on + strand, within CA264_08850at 2067.616 kb on - strand, within CA264_08850at 2067.616 kb on - strand, within CA264_08850at 2067.616 kb on - strand, within CA264_08850at 2067.705 kb on + strand, within CA264_08850at 2067.832 kb on + strand, within CA264_08850at 2067.945 kb on + strand, within CA264_08850at 2067.946 kb on - strand, within CA264_08850at 2067.949 kb on - strand, within CA264_08850at 2067.952 kb on + strand, within CA264_08850at 2067.952 kb on + strand, within CA264_08850at 2067.952 kb on + strand, within CA264_08850at 2067.953 kb on - strand, within CA264_08850at 2068.061 kb on + strandat 2068.084 kb on - strandat 2068.086 kb on - strandat 2068.091 kb on - strandat 2068.091 kb on - strandat 2068.121 kb on - strandat 2068.157 kb on + strandat 2068.158 kb on - strandat 2068.225 kb on + strandat 2068.231 kb on + strandat 2068.231 kb on + strandat 2068.236 kb on - strandat 2068.328 kb on - strand, within CA264_08855at 2068.328 kb on - strand, within CA264_08855at 2068.371 kb on + strand, within CA264_08855at 2068.372 kb on - strand, within CA264_08855at 2068.372 kb on - strand, within CA264_08855at 2068.372 kb on - strand, within CA264_08855at 2068.373 kb on + strand, within CA264_08855at 2068.407 kb on + strand, within CA264_08855at 2068.408 kb on - strand, within CA264_08855at 2068.408 kb on - strand, within CA264_08855at 2068.408 kb on - strand, within CA264_08855at 2068.409 kb on + strand, within CA264_08855at 2068.420 kb on + strand, within CA264_08855at 2068.423 kb on + strand, within CA264_08855at 2068.423 kb on + strand, within CA264_08855at 2068.423 kb on + strand, within CA264_08855at 2068.424 kb on - strand, within CA264_08855at 2068.516 kb on - strand, within CA264_08855at 2068.516 kb on - strand, within CA264_08855at 2068.588 kb on + strand, within CA264_08855at 2068.589 kb on - strand, within CA264_08855at 2068.621 kb on + strand, within CA264_08855at 2068.622 kb on - strand, within CA264_08855at 2068.686 kb on + strand, within CA264_08855at 2068.687 kb on - strand, within CA264_08855at 2068.719 kb on + strand, within CA264_08855at 2068.877 kb on + strand, within CA264_08855at 2068.878 kb on - strand, within CA264_08855at 2068.909 kb on - strand, within CA264_08855at 2068.925 kb on - strand, within CA264_08855at 2068.925 kb on - strand, within CA264_08855at 2068.925 kb on - strand, within CA264_08855at 2068.925 kb on - strand, within CA264_08855at 2068.985 kb on + strand, within CA264_08855at 2068.985 kb on + strand, within CA264_08855at 2069.028 kb on - strand, within CA264_08855at 2069.034 kb on - strandat 2069.149 kb on - strandat 2069.159 kb on + strandat 2069.160 kb on - strandat 2069.160 kb on - strandat 2069.160 kb on - strandat 2069.165 kb on + strandat 2069.170 kb on + strandat 2069.204 kb on + strandat 2069.204 kb on + strandat 2069.205 kb on - strandat 2069.211 kb on + strandat 2069.212 kb on - strandat 2069.290 kb on + strand, within CA264_08860at 2069.291 kb on - strand, within CA264_08860at 2069.324 kb on - strand, within CA264_08860at 2069.372 kb on + strand, within CA264_08860at 2069.372 kb on + strand, within CA264_08860at 2069.372 kb on + strand, within CA264_08860at 2069.372 kb on + strand, within CA264_08860at 2069.373 kb on - strand, within CA264_08860at 2069.556 kb on - strandat 2069.592 kb on + strandat 2069.595 kb on - strandat 2069.640 kb on - strandat 2069.657 kb on - strandat 2069.662 kb on + strandat 2069.662 kb on + strandat 2069.691 kb on - strandat 2069.883 kb on + strand, within CA264_08865at 2069.897 kb on + strand, within CA264_08865at 2069.897 kb on + strand, within CA264_08865at 2069.897 kb on + strand, within CA264_08865at 2069.898 kb on - strand, within CA264_08865at 2069.898 kb on - strand, within CA264_08865at 2069.900 kb on - strand, within CA264_08865at 2069.900 kb on - strand, within CA264_08865at 2069.900 kb on - strand, within CA264_08865at 2069.941 kb on + strand, within CA264_08865at 2069.941 kb on + strand, within CA264_08865at 2069.942 kb on - strand, within CA264_08865at 2069.984 kb on + strand, within CA264_08865

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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2,067,227 + -0.2
2,067,228 - -0.5
2,067,269 + -0.6
2,067,296 + +0.2
2,067,381 + CA264_08850 0.17 -0.7
2,067,401 + CA264_08850 0.20 +0.6
2,067,401 + CA264_08850 0.20 -1.2
2,067,495 + CA264_08850 0.30 +0.2
2,067,552 + CA264_08850 0.37 +0.1
2,067,553 - CA264_08850 0.37 -0.2
2,067,553 - CA264_08850 0.37 -0.5
2,067,605 - CA264_08850 0.43 +0.1
2,067,615 + CA264_08850 0.44 +1.9
2,067,616 - CA264_08850 0.44 -1.1
2,067,616 - CA264_08850 0.44 +0.2
2,067,616 - CA264_08850 0.44 -0.8
2,067,705 + CA264_08850 0.54 +0.1
2,067,832 + CA264_08850 0.69 -0.0
2,067,945 + CA264_08850 0.82 -0.0
2,067,946 - CA264_08850 0.82 -0.1
2,067,949 - CA264_08850 0.82 -0.8
2,067,952 + CA264_08850 0.83 -0.7
2,067,952 + CA264_08850 0.83 -0.3
2,067,952 + CA264_08850 0.83 -0.1
2,067,953 - CA264_08850 0.83 +0.3
2,068,061 + -0.9
2,068,084 - -1.8
2,068,086 - +0.1
2,068,091 - +0.4
2,068,091 - +0.3
2,068,121 - -0.1
2,068,157 + -2.4
2,068,158 - +0.0
2,068,225 + -1.2
2,068,231 + +0.2
2,068,231 + +0.1
2,068,236 - -1.4
2,068,328 - CA264_08855 0.13 +0.3
2,068,328 - CA264_08855 0.13 +0.6
2,068,371 + CA264_08855 0.18 -0.7
2,068,372 - CA264_08855 0.18 -0.1
2,068,372 - CA264_08855 0.18 +0.8
2,068,372 - CA264_08855 0.18 -0.1
2,068,373 + CA264_08855 0.18 +2.2
2,068,407 + CA264_08855 0.22 +0.7
2,068,408 - CA264_08855 0.22 +0.0
2,068,408 - CA264_08855 0.22 -0.3
2,068,408 - CA264_08855 0.22 +1.6
2,068,409 + CA264_08855 0.22 -0.5
2,068,420 + CA264_08855 0.23 -2.4
2,068,423 + CA264_08855 0.24 +0.9
2,068,423 + CA264_08855 0.24 -0.4
2,068,423 + CA264_08855 0.24 -0.1
2,068,424 - CA264_08855 0.24 -0.5
2,068,516 - CA264_08855 0.34 +0.2
2,068,516 - CA264_08855 0.34 +1.8
2,068,588 + CA264_08855 0.42 -0.4
2,068,589 - CA264_08855 0.42 +0.2
2,068,621 + CA264_08855 0.45 -0.4
2,068,622 - CA264_08855 0.45 +0.6
2,068,686 + CA264_08855 0.52 -0.5
2,068,687 - CA264_08855 0.52 +0.7
2,068,719 + CA264_08855 0.56 +0.6
2,068,877 + CA264_08855 0.73 -0.3
2,068,878 - CA264_08855 0.73 -0.4
2,068,909 - CA264_08855 0.77 +0.7
2,068,925 - CA264_08855 0.78 +0.5
2,068,925 - CA264_08855 0.78 +0.4
2,068,925 - CA264_08855 0.78 -0.1
2,068,925 - CA264_08855 0.78 -0.4
2,068,985 + CA264_08855 0.85 +0.0
2,068,985 + CA264_08855 0.85 -0.4
2,069,028 - CA264_08855 0.90 -0.9
2,069,034 - -0.8
2,069,149 - -0.2
2,069,159 + -0.5
2,069,160 - +0.3
2,069,160 - -0.3
2,069,160 - -0.0
2,069,165 + -0.0
2,069,170 + +0.2
2,069,204 + -0.7
2,069,204 + +0.1
2,069,205 - +0.5
2,069,211 + +0.1
2,069,212 - +0.5
2,069,290 + CA264_08860 0.27 +0.6
2,069,291 - CA264_08860 0.27 -0.2
2,069,324 - CA264_08860 0.35 -0.3
2,069,372 + CA264_08860 0.47 -0.6
2,069,372 + CA264_08860 0.47 -0.1
2,069,372 + CA264_08860 0.47 -2.2
2,069,372 + CA264_08860 0.47 +0.6
2,069,373 - CA264_08860 0.47 -0.2
2,069,556 - -0.1
2,069,592 + -0.4
2,069,595 - +0.2
2,069,640 - +0.0
2,069,657 - -0.4
2,069,662 + -0.6
2,069,662 + +0.5
2,069,691 - +0.2
2,069,883 + CA264_08865 0.23 +1.2
2,069,897 + CA264_08865 0.24 +0.2
2,069,897 + CA264_08865 0.24 -0.2
2,069,897 + CA264_08865 0.24 +0.1
2,069,898 - CA264_08865 0.25 +0.1
2,069,898 - CA264_08865 0.25 +0.1
2,069,900 - CA264_08865 0.25 -0.3
2,069,900 - CA264_08865 0.25 -0.8
2,069,900 - CA264_08865 0.25 -0.4
2,069,941 + CA264_08865 0.29 -1.4
2,069,941 + CA264_08865 0.29 +0.5
2,069,942 - CA264_08865 0.29 -1.1
2,069,984 + CA264_08865 0.33 +1.2

Or see this region's nucleotide sequence