Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08730

Experiment: m.b. benzoic 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_08725 and CA264_08730 are separated by 25 nucleotidesCA264_08730 and CA264_08735 are separated by 321 nucleotides CA264_08725: CA264_08725 - hydrophobe/amphiphile efflux-1 family RND transporter, at 2,029,688 to 2,032,855 _08725 CA264_08730: CA264_08730 - efflux transporter periplasmic adaptor subunit, at 2,032,881 to 2,033,963 _08730 CA264_08735: CA264_08735 - hypothetical protein, at 2,034,285 to 2,034,710 _08735 Position (kb) 2032 2033 2034Strain fitness (log2 ratio) -2 -1 0 1 2at 2031.948 kb on - strand, within CA264_08725at 2031.948 kb on - strand, within CA264_08725at 2032.020 kb on + strand, within CA264_08725at 2032.020 kb on + strand, within CA264_08725at 2032.020 kb on + strand, within CA264_08725at 2032.020 kb on + strand, within CA264_08725at 2032.021 kb on - strand, within CA264_08725at 2032.024 kb on + strand, within CA264_08725at 2032.024 kb on + strand, within CA264_08725at 2032.024 kb on + strand, within CA264_08725at 2032.025 kb on - strand, within CA264_08725at 2032.050 kb on - strand, within CA264_08725at 2032.073 kb on + strand, within CA264_08725at 2032.073 kb on + strand, within CA264_08725at 2032.074 kb on - strand, within CA264_08725at 2032.074 kb on - strand, within CA264_08725at 2032.074 kb on - strand, within CA264_08725at 2032.108 kb on + strand, within CA264_08725at 2032.108 kb on + strand, within CA264_08725at 2032.146 kb on + strand, within CA264_08725at 2032.147 kb on - strand, within CA264_08725at 2032.150 kb on + strand, within CA264_08725at 2032.159 kb on - strand, within CA264_08725at 2032.178 kb on + strand, within CA264_08725at 2032.296 kb on - strand, within CA264_08725at 2032.318 kb on + strand, within CA264_08725at 2032.424 kb on - strand, within CA264_08725at 2032.440 kb on + strand, within CA264_08725at 2032.450 kb on + strand, within CA264_08725at 2032.450 kb on + strand, within CA264_08725at 2032.451 kb on - strand, within CA264_08725at 2032.451 kb on - strand, within CA264_08725at 2032.625 kb on - strandat 2032.652 kb on - strandat 2032.762 kb on + strandat 2032.763 kb on - strandat 2032.790 kb on + strandat 2032.791 kb on - strandat 2032.846 kb on + strandat 2032.849 kb on + strandat 2032.882 kb on + strandat 2032.891 kb on + strandat 2032.892 kb on - strandat 2032.893 kb on + strandat 2032.893 kb on + strandat 2032.989 kb on - strandat 2033.013 kb on + strand, within CA264_08730at 2033.021 kb on - strand, within CA264_08730at 2033.063 kb on + strand, within CA264_08730at 2033.063 kb on + strand, within CA264_08730at 2033.064 kb on - strand, within CA264_08730at 2033.089 kb on + strand, within CA264_08730at 2033.089 kb on + strand, within CA264_08730at 2033.090 kb on - strand, within CA264_08730at 2033.090 kb on - strand, within CA264_08730at 2033.090 kb on - strand, within CA264_08730at 2033.095 kb on + strand, within CA264_08730at 2033.095 kb on + strand, within CA264_08730at 2033.095 kb on + strand, within CA264_08730at 2033.095 kb on + strand, within CA264_08730at 2033.095 kb on + strand, within CA264_08730at 2033.095 kb on + strand, within CA264_08730at 2033.096 kb on - strand, within CA264_08730at 2033.096 kb on - strand, within CA264_08730at 2033.096 kb on - strand, within CA264_08730at 2033.096 kb on - strand, within CA264_08730at 2033.389 kb on + strand, within CA264_08730at 2033.390 kb on - strand, within CA264_08730at 2033.390 kb on - strand, within CA264_08730at 2033.392 kb on + strand, within CA264_08730at 2033.463 kb on + strand, within CA264_08730at 2033.464 kb on - strand, within CA264_08730at 2033.686 kb on + strand, within CA264_08730at 2033.764 kb on + strand, within CA264_08730at 2033.793 kb on - strand, within CA264_08730at 2033.799 kb on + strand, within CA264_08730at 2033.801 kb on + strand, within CA264_08730at 2033.802 kb on - strand, within CA264_08730at 2033.818 kb on - strand, within CA264_08730at 2033.858 kb on + strandat 2033.868 kb on - strandat 2033.915 kb on + strandat 2033.993 kb on + strandat 2034.263 kb on + strandat 2034.263 kb on + strandat 2034.264 kb on - strandat 2034.265 kb on + strandat 2034.284 kb on - strandat 2034.284 kb on - strandat 2034.284 kb on - strandat 2034.286 kb on + strandat 2034.287 kb on - strandat 2034.358 kb on - strand, within CA264_08735at 2034.385 kb on + strand, within CA264_08735at 2034.421 kb on + strand, within CA264_08735at 2034.517 kb on + strand, within CA264_08735at 2034.517 kb on + strand, within CA264_08735at 2034.517 kb on + strand, within CA264_08735at 2034.527 kb on - strand, within CA264_08735at 2034.633 kb on - strand, within CA264_08735at 2034.640 kb on + strand, within CA264_08735at 2034.641 kb on - strand, within CA264_08735at 2034.641 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.652 kb on + strand, within CA264_08735at 2034.674 kb on + strandat 2034.675 kb on - strandat 2034.689 kb on - strandat 2034.725 kb on - strandat 2034.828 kb on + strandat 2034.840 kb on + strandat 2034.840 kb on + strandat 2034.904 kb on - strandat 2034.904 kb on - strandat 2034.915 kb on + strandat 2034.916 kb on - strandat 2034.921 kb on + strandat 2034.937 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
remove
2,031,948 - CA264_08725 0.71 +0.1
2,031,948 - CA264_08725 0.71 -0.3
2,032,020 + CA264_08725 0.74 +0.3
2,032,020 + CA264_08725 0.74 +0.1
2,032,020 + CA264_08725 0.74 +0.2
2,032,020 + CA264_08725 0.74 -0.4
2,032,021 - CA264_08725 0.74 -0.2
2,032,024 + CA264_08725 0.74 -0.1
2,032,024 + CA264_08725 0.74 -0.2
2,032,024 + CA264_08725 0.74 -0.9
2,032,025 - CA264_08725 0.74 -0.0
2,032,050 - CA264_08725 0.75 -0.0
2,032,073 + CA264_08725 0.75 -0.5
2,032,073 + CA264_08725 0.75 -0.1
2,032,074 - CA264_08725 0.75 -0.2
2,032,074 - CA264_08725 0.75 -0.5
2,032,074 - CA264_08725 0.75 -0.3
2,032,108 + CA264_08725 0.76 -0.2
2,032,108 + CA264_08725 0.76 -1.2
2,032,146 + CA264_08725 0.78 -0.7
2,032,147 - CA264_08725 0.78 -0.6
2,032,150 + CA264_08725 0.78 +0.1
2,032,159 - CA264_08725 0.78 +0.2
2,032,178 + CA264_08725 0.79 +0.2
2,032,296 - CA264_08725 0.82 -1.5
2,032,318 + CA264_08725 0.83 +1.2
2,032,424 - CA264_08725 0.86 +0.2
2,032,440 + CA264_08725 0.87 -0.4
2,032,450 + CA264_08725 0.87 +0.4
2,032,450 + CA264_08725 0.87 -0.3
2,032,451 - CA264_08725 0.87 -0.3
2,032,451 - CA264_08725 0.87 -1.7
2,032,625 - +0.2
2,032,652 - +0.4
2,032,762 + -0.6
2,032,763 - -0.2
2,032,790 + -0.7
2,032,791 - +0.3
2,032,846 + -0.3
2,032,849 + -0.1
2,032,882 + -0.1
2,032,891 + -0.3
2,032,892 - -2.7
2,032,893 + -0.6
2,032,893 + -0.5
2,032,989 - -0.9
2,033,013 + CA264_08730 0.12 -0.0
2,033,021 - CA264_08730 0.13 -0.7
2,033,063 + CA264_08730 0.17 -0.1
2,033,063 + CA264_08730 0.17 +0.6
2,033,064 - CA264_08730 0.17 +0.3
2,033,089 + CA264_08730 0.19 -0.0
2,033,089 + CA264_08730 0.19 -1.3
2,033,090 - CA264_08730 0.19 -0.4
2,033,090 - CA264_08730 0.19 -0.2
2,033,090 - CA264_08730 0.19 -0.5
2,033,095 + CA264_08730 0.20 +1.9
2,033,095 + CA264_08730 0.20 +0.4
2,033,095 + CA264_08730 0.20 +0.6
2,033,095 + CA264_08730 0.20 +0.1
2,033,095 + CA264_08730 0.20 +0.1
2,033,095 + CA264_08730 0.20 +0.8
2,033,096 - CA264_08730 0.20 +1.0
2,033,096 - CA264_08730 0.20 -0.8
2,033,096 - CA264_08730 0.20 +0.7
2,033,096 - CA264_08730 0.20 +0.1
2,033,389 + CA264_08730 0.47 -1.8
2,033,390 - CA264_08730 0.47 -0.5
2,033,390 - CA264_08730 0.47 -1.9
2,033,392 + CA264_08730 0.47 -0.1
2,033,463 + CA264_08730 0.54 -0.9
2,033,464 - CA264_08730 0.54 +0.1
2,033,686 + CA264_08730 0.74 -0.4
2,033,764 + CA264_08730 0.82 +0.4
2,033,793 - CA264_08730 0.84 +0.1
2,033,799 + CA264_08730 0.85 -0.3
2,033,801 + CA264_08730 0.85 -0.5
2,033,802 - CA264_08730 0.85 -0.4
2,033,818 - CA264_08730 0.87 -0.5
2,033,858 + +0.3
2,033,868 - +0.1
2,033,915 + -0.2
2,033,993 + -0.4
2,034,263 + +0.2
2,034,263 + +0.4
2,034,264 - -0.1
2,034,265 + +0.4
2,034,284 - +0.6
2,034,284 - -0.4
2,034,284 - +0.3
2,034,286 + -0.4
2,034,287 - +0.3
2,034,358 - CA264_08735 0.17 +0.1
2,034,385 + CA264_08735 0.23 +0.6
2,034,421 + CA264_08735 0.32 -0.6
2,034,517 + CA264_08735 0.54 -0.3
2,034,517 + CA264_08735 0.54 -0.6
2,034,517 + CA264_08735 0.54 -0.0
2,034,527 - CA264_08735 0.57 -0.8
2,034,633 - CA264_08735 0.82 -0.4
2,034,640 + CA264_08735 0.83 +0.2
2,034,641 - CA264_08735 0.84 +0.2
2,034,641 - CA264_08735 0.84 -1.7
2,034,643 - CA264_08735 0.84 -1.5
2,034,643 - CA264_08735 0.84 +0.3
2,034,643 - CA264_08735 0.84 +0.1
2,034,643 - CA264_08735 0.84 -0.5
2,034,643 - CA264_08735 0.84 -0.1
2,034,652 + CA264_08735 0.86 +0.0
2,034,674 + -0.6
2,034,675 - +0.2
2,034,689 - -1.0
2,034,725 - -0.4
2,034,828 + -0.4
2,034,840 + -0.3
2,034,840 + -0.9
2,034,904 - +0.1
2,034,904 - -0.2
2,034,915 + -1.9
2,034,916 - -0.8
2,034,921 + -0.7
2,034,937 - +2.1

Or see this region's nucleotide sequence