Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08660

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08655 and CA264_08660 are separated by 101 nucleotidesCA264_08660 and CA264_08665 are separated by 515 nucleotides CA264_08655: CA264_08655 - DUF58 domain-containing protein, at 2,007,073 to 2,008,404 _08655 CA264_08660: CA264_08660 - sodium:proton antiporter, at 2,008,506 to 2,009,846 _08660 CA264_08665: CA264_08665 - N-acetylmuramoyl-L-alanine amidase, at 2,010,362 to 2,011,282 _08665 Position (kb) 2008 2009 2010Strain fitness (log2 ratio) -1 0 1 2at 2007.569 kb on - strand, within CA264_08655at 2007.639 kb on - strand, within CA264_08655at 2007.684 kb on - strand, within CA264_08655at 2007.684 kb on - strand, within CA264_08655at 2007.684 kb on - strand, within CA264_08655at 2007.691 kb on + strand, within CA264_08655at 2007.692 kb on - strand, within CA264_08655at 2007.753 kb on - strand, within CA264_08655at 2007.753 kb on - strand, within CA264_08655at 2007.792 kb on - strand, within CA264_08655at 2007.793 kb on + strand, within CA264_08655at 2007.794 kb on - strand, within CA264_08655at 2007.794 kb on - strand, within CA264_08655at 2007.857 kb on - strand, within CA264_08655at 2007.857 kb on - strand, within CA264_08655at 2007.857 kb on - strand, within CA264_08655at 2007.950 kb on + strand, within CA264_08655at 2007.950 kb on + strand, within CA264_08655at 2007.951 kb on - strand, within CA264_08655at 2007.951 kb on - strand, within CA264_08655at 2007.951 kb on - strand, within CA264_08655at 2007.951 kb on - strand, within CA264_08655at 2007.951 kb on - strand, within CA264_08655at 2008.004 kb on - strand, within CA264_08655at 2008.036 kb on + strand, within CA264_08655at 2008.142 kb on - strand, within CA264_08655at 2008.245 kb on - strand, within CA264_08655at 2008.245 kb on - strand, within CA264_08655at 2008.245 kb on - strand, within CA264_08655at 2008.276 kb on + strandat 2008.276 kb on + strandat 2008.277 kb on - strandat 2008.277 kb on - strandat 2008.448 kb on + strandat 2008.475 kb on - strandat 2008.478 kb on + strandat 2008.479 kb on - strandat 2008.571 kb on - strandat 2008.610 kb on - strandat 2008.803 kb on - strand, within CA264_08660at 2008.854 kb on + strand, within CA264_08660at 2008.855 kb on - strand, within CA264_08660at 2009.271 kb on + strand, within CA264_08660at 2009.611 kb on + strand, within CA264_08660at 2009.761 kb on - strandat 2009.786 kb on + strandat 2009.848 kb on + strandat 2009.849 kb on - strandat 2009.850 kb on + strandat 2009.850 kb on + strandat 2009.850 kb on + strandat 2009.850 kb on + strandat 2009.851 kb on - strandat 2009.851 kb on - strandat 2009.922 kb on - strandat 2009.922 kb on - strandat 2009.927 kb on + strandat 2009.927 kb on + strandat 2009.985 kb on + strandat 2010.000 kb on + strandat 2010.069 kb on - strandat 2010.185 kb on - strandat 2010.255 kb on + strandat 2010.330 kb on - strandat 2010.361 kb on + strandat 2010.362 kb on - strandat 2010.368 kb on + strandat 2010.368 kb on + strandat 2010.368 kb on + strandat 2010.369 kb on - strandat 2010.371 kb on - strandat 2010.674 kb on + strand, within CA264_08665at 2010.675 kb on - strand, within CA264_08665at 2010.701 kb on + strand, within CA264_08665

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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2,007,569 - CA264_08655 0.37 +0.1
2,007,639 - CA264_08655 0.42 +0.2
2,007,684 - CA264_08655 0.46 -0.5
2,007,684 - CA264_08655 0.46 -0.2
2,007,684 - CA264_08655 0.46 -1.6
2,007,691 + CA264_08655 0.46 +0.6
2,007,692 - CA264_08655 0.46 +0.0
2,007,753 - CA264_08655 0.51 +0.4
2,007,753 - CA264_08655 0.51 -0.1
2,007,792 - CA264_08655 0.54 -0.9
2,007,793 + CA264_08655 0.54 +0.1
2,007,794 - CA264_08655 0.54 -1.0
2,007,794 - CA264_08655 0.54 -0.8
2,007,857 - CA264_08655 0.59 -0.1
2,007,857 - CA264_08655 0.59 -0.1
2,007,857 - CA264_08655 0.59 +0.1
2,007,950 + CA264_08655 0.66 +0.4
2,007,950 + CA264_08655 0.66 -1.0
2,007,951 - CA264_08655 0.66 +0.1
2,007,951 - CA264_08655 0.66 +0.8
2,007,951 - CA264_08655 0.66 +0.2
2,007,951 - CA264_08655 0.66 -0.7
2,007,951 - CA264_08655 0.66 +0.0
2,008,004 - CA264_08655 0.70 -0.4
2,008,036 + CA264_08655 0.72 -0.2
2,008,142 - CA264_08655 0.80 +0.1
2,008,245 - CA264_08655 0.88 -0.5
2,008,245 - CA264_08655 0.88 -0.2
2,008,245 - CA264_08655 0.88 +0.2
2,008,276 + -0.5
2,008,276 + -0.3
2,008,277 - -0.4
2,008,277 - +0.3
2,008,448 + +0.7
2,008,475 - -0.6
2,008,478 + +0.2
2,008,479 - -0.3
2,008,571 - -1.5
2,008,610 - +0.5
2,008,803 - CA264_08660 0.22 -0.0
2,008,854 + CA264_08660 0.26 +0.1
2,008,855 - CA264_08660 0.26 -0.2
2,009,271 + CA264_08660 0.57 -1.4
2,009,611 + CA264_08660 0.82 +0.4
2,009,761 - +1.0
2,009,786 + -0.4
2,009,848 + +0.4
2,009,849 - -0.4
2,009,850 + +1.6
2,009,850 + -1.4
2,009,850 + -0.2
2,009,850 + +0.0
2,009,851 - -0.3
2,009,851 - -0.2
2,009,922 - -1.0
2,009,922 - +0.2
2,009,927 + -0.4
2,009,927 + -0.2
2,009,985 + -0.9
2,010,000 + +1.9
2,010,069 - +1.2
2,010,185 - +0.2
2,010,255 + -0.0
2,010,330 - -0.1
2,010,361 + -0.4
2,010,362 - -1.2
2,010,368 + +1.0
2,010,368 + +0.5
2,010,368 + +0.3
2,010,369 - +0.1
2,010,371 - +1.6
2,010,674 + CA264_08665 0.34 +0.4
2,010,675 - CA264_08665 0.34 -0.2
2,010,701 + CA264_08665 0.37 +0.1

Or see this region's nucleotide sequence