Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07865

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07860 and CA264_07865 are separated by 226 nucleotidesCA264_07865 and CA264_07870 are separated by 176 nucleotides CA264_07860: CA264_07860 - SAM-dependent methyltransferase, at 1,820,198 to 1,820,911 _07860 CA264_07865: CA264_07865 - hypothetical protein, at 1,821,138 to 1,821,671 _07865 CA264_07870: CA264_07870 - LysR family transcriptional regulator, at 1,821,848 to 1,822,756 _07870 Position (kb) 1821 1822Strain fitness (log2 ratio) -2 -1 0 1 2at 1820.152 kb on - strandat 1820.153 kb on + strandat 1820.161 kb on - strandat 1820.166 kb on + strandat 1820.189 kb on - strandat 1820.281 kb on - strand, within CA264_07860at 1820.343 kb on + strand, within CA264_07860at 1820.344 kb on - strand, within CA264_07860at 1820.344 kb on - strand, within CA264_07860at 1820.353 kb on + strand, within CA264_07860at 1820.354 kb on - strand, within CA264_07860at 1820.354 kb on - strand, within CA264_07860at 1820.356 kb on - strand, within CA264_07860at 1820.418 kb on + strand, within CA264_07860at 1820.419 kb on - strand, within CA264_07860at 1820.424 kb on + strand, within CA264_07860at 1820.424 kb on + strand, within CA264_07860at 1820.424 kb on + strand, within CA264_07860at 1820.424 kb on + strand, within CA264_07860at 1820.424 kb on + strand, within CA264_07860at 1820.425 kb on - strand, within CA264_07860at 1820.429 kb on + strand, within CA264_07860at 1820.429 kb on + strand, within CA264_07860at 1820.429 kb on + strand, within CA264_07860at 1820.430 kb on - strand, within CA264_07860at 1820.554 kb on + strand, within CA264_07860at 1820.714 kb on + strand, within CA264_07860at 1820.908 kb on - strandat 1820.966 kb on + strandat 1820.970 kb on + strandat 1820.970 kb on + strandat 1820.970 kb on + strandat 1820.972 kb on + strandat 1820.973 kb on - strandat 1821.004 kb on - strandat 1821.040 kb on - strandat 1821.048 kb on + strandat 1821.053 kb on + strandat 1821.053 kb on + strandat 1821.054 kb on - strandat 1821.055 kb on + strandat 1821.057 kb on + strandat 1821.078 kb on + strandat 1821.082 kb on + strandat 1821.121 kb on - strandat 1821.122 kb on + strandat 1821.122 kb on + strandat 1821.162 kb on + strandat 1821.162 kb on + strandat 1821.163 kb on - strandat 1821.261 kb on - strand, within CA264_07865at 1821.262 kb on + strand, within CA264_07865at 1821.263 kb on - strand, within CA264_07865at 1821.263 kb on - strand, within CA264_07865at 1821.313 kb on - strand, within CA264_07865at 1821.313 kb on - strand, within CA264_07865at 1821.316 kb on + strand, within CA264_07865at 1821.317 kb on - strand, within CA264_07865at 1821.317 kb on - strand, within CA264_07865at 1821.317 kb on - strand, within CA264_07865at 1821.356 kb on + strand, within CA264_07865at 1821.383 kb on + strand, within CA264_07865at 1821.417 kb on + strand, within CA264_07865at 1821.417 kb on + strand, within CA264_07865at 1821.419 kb on + strand, within CA264_07865at 1821.420 kb on - strand, within CA264_07865at 1821.454 kb on - strand, within CA264_07865at 1821.464 kb on - strand, within CA264_07865at 1821.567 kb on + strand, within CA264_07865at 1821.567 kb on + strand, within CA264_07865at 1821.568 kb on - strand, within CA264_07865at 1821.568 kb on - strand, within CA264_07865at 1821.669 kb on + strandat 1821.669 kb on + strandat 1821.695 kb on - strandat 1821.717 kb on + strandat 1821.724 kb on + strandat 1821.756 kb on - strandat 1821.756 kb on - strandat 1821.767 kb on + strandat 1821.835 kb on - strandat 1821.883 kb on - strandat 1821.974 kb on + strand, within CA264_07870at 1821.975 kb on - strand, within CA264_07870at 1821.975 kb on - strand, within CA264_07870at 1821.975 kb on - strand, within CA264_07870at 1821.975 kb on - strand, within CA264_07870at 1822.093 kb on + strand, within CA264_07870at 1822.101 kb on + strand, within CA264_07870at 1822.101 kb on + strand, within CA264_07870at 1822.101 kb on + strand, within CA264_07870at 1822.102 kb on - strand, within CA264_07870at 1822.102 kb on - strand, within CA264_07870at 1822.125 kb on + strand, within CA264_07870at 1822.126 kb on - strand, within CA264_07870at 1822.163 kb on + strand, within CA264_07870at 1822.163 kb on + strand, within CA264_07870at 1822.164 kb on - strand, within CA264_07870at 1822.164 kb on - strand, within CA264_07870at 1822.165 kb on + strand, within CA264_07870at 1822.166 kb on - strand, within CA264_07870at 1822.166 kb on - strand, within CA264_07870at 1822.166 kb on - strand, within CA264_07870at 1822.191 kb on - strand, within CA264_07870at 1822.263 kb on + strand, within CA264_07870at 1822.263 kb on + strand, within CA264_07870at 1822.263 kb on + strand, within CA264_07870at 1822.282 kb on - strand, within CA264_07870at 1822.282 kb on - strand, within CA264_07870at 1822.299 kb on + strand, within CA264_07870at 1822.318 kb on + strand, within CA264_07870at 1822.319 kb on - strand, within CA264_07870at 1822.319 kb on - strand, within CA264_07870at 1822.322 kb on + strand, within CA264_07870at 1822.322 kb on + strand, within CA264_07870at 1822.356 kb on + strand, within CA264_07870at 1822.409 kb on + strand, within CA264_07870at 1822.409 kb on + strand, within CA264_07870at 1822.410 kb on - strand, within CA264_07870at 1822.410 kb on - strand, within CA264_07870at 1822.410 kb on - strand, within CA264_07870at 1822.667 kb on + strandat 1822.668 kb on - strandat 1822.668 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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1,820,152 - -1.4
1,820,153 + +0.2
1,820,161 - +0.1
1,820,166 + -0.7
1,820,189 - -0.0
1,820,281 - CA264_07860 0.12 +0.3
1,820,343 + CA264_07860 0.20 +1.4
1,820,344 - CA264_07860 0.20 -0.3
1,820,344 - CA264_07860 0.20 -0.2
1,820,353 + CA264_07860 0.22 -0.5
1,820,354 - CA264_07860 0.22 +0.4
1,820,354 - CA264_07860 0.22 +0.4
1,820,356 - CA264_07860 0.22 -0.1
1,820,418 + CA264_07860 0.31 +0.2
1,820,419 - CA264_07860 0.31 -0.2
1,820,424 + CA264_07860 0.32 +0.1
1,820,424 + CA264_07860 0.32 -2.5
1,820,424 + CA264_07860 0.32 +0.2
1,820,424 + CA264_07860 0.32 -0.1
1,820,424 + CA264_07860 0.32 +0.9
1,820,425 - CA264_07860 0.32 -2.4
1,820,429 + CA264_07860 0.32 -0.5
1,820,429 + CA264_07860 0.32 +1.9
1,820,429 + CA264_07860 0.32 +0.6
1,820,430 - CA264_07860 0.32 -0.4
1,820,554 + CA264_07860 0.50 +0.1
1,820,714 + CA264_07860 0.72 -0.1
1,820,908 - -0.2
1,820,966 + -0.2
1,820,970 + +1.4
1,820,970 + +0.4
1,820,970 + -0.3
1,820,972 + -0.2
1,820,973 - -2.3
1,821,004 - +0.1
1,821,040 - -0.8
1,821,048 + +0.0
1,821,053 + -0.4
1,821,053 + +0.6
1,821,054 - -0.5
1,821,055 + -2.0
1,821,057 + +0.6
1,821,078 + -0.2
1,821,082 + -0.6
1,821,121 - -0.0
1,821,122 + -0.7
1,821,122 + -0.0
1,821,162 + +0.1
1,821,162 + -0.6
1,821,163 - -0.2
1,821,261 - CA264_07865 0.23 +1.4
1,821,262 + CA264_07865 0.23 +0.5
1,821,263 - CA264_07865 0.23 -0.1
1,821,263 - CA264_07865 0.23 -0.6
1,821,313 - CA264_07865 0.33 +0.5
1,821,313 - CA264_07865 0.33 -1.0
1,821,316 + CA264_07865 0.33 +0.5
1,821,317 - CA264_07865 0.34 +0.7
1,821,317 - CA264_07865 0.34 -0.5
1,821,317 - CA264_07865 0.34 -0.5
1,821,356 + CA264_07865 0.41 +0.7
1,821,383 + CA264_07865 0.46 +0.7
1,821,417 + CA264_07865 0.52 +0.5
1,821,417 + CA264_07865 0.52 -1.0
1,821,419 + CA264_07865 0.53 +0.7
1,821,420 - CA264_07865 0.53 +0.4
1,821,454 - CA264_07865 0.59 +0.7
1,821,464 - CA264_07865 0.61 -0.2
1,821,567 + CA264_07865 0.80 -0.7
1,821,567 + CA264_07865 0.80 -0.1
1,821,568 - CA264_07865 0.81 -1.2
1,821,568 - CA264_07865 0.81 -0.1
1,821,669 + +0.5
1,821,669 + +0.5
1,821,695 - +1.4
1,821,717 + -0.1
1,821,724 + +0.1
1,821,756 - -0.7
1,821,756 - -0.6
1,821,767 + +0.9
1,821,835 - +0.6
1,821,883 - -0.3
1,821,974 + CA264_07870 0.14 +0.3
1,821,975 - CA264_07870 0.14 +0.0
1,821,975 - CA264_07870 0.14 -0.3
1,821,975 - CA264_07870 0.14 -0.3
1,821,975 - CA264_07870 0.14 -0.7
1,822,093 + CA264_07870 0.27 +0.3
1,822,101 + CA264_07870 0.28 +1.2
1,822,101 + CA264_07870 0.28 +0.5
1,822,101 + CA264_07870 0.28 +0.2
1,822,102 - CA264_07870 0.28 +0.6
1,822,102 - CA264_07870 0.28 +0.5
1,822,125 + CA264_07870 0.30 -1.0
1,822,126 - CA264_07870 0.31 +0.1
1,822,163 + CA264_07870 0.35 +0.2
1,822,163 + CA264_07870 0.35 +0.2
1,822,164 - CA264_07870 0.35 +1.0
1,822,164 - CA264_07870 0.35 -0.2
1,822,165 + CA264_07870 0.35 +0.1
1,822,166 - CA264_07870 0.35 +0.8
1,822,166 - CA264_07870 0.35 -0.5
1,822,166 - CA264_07870 0.35 -0.1
1,822,191 - CA264_07870 0.38 +1.2
1,822,263 + CA264_07870 0.46 +0.1
1,822,263 + CA264_07870 0.46 +0.1
1,822,263 + CA264_07870 0.46 -0.3
1,822,282 - CA264_07870 0.48 +0.6
1,822,282 - CA264_07870 0.48 +1.8
1,822,299 + CA264_07870 0.50 -0.2
1,822,318 + CA264_07870 0.52 -0.6
1,822,319 - CA264_07870 0.52 -0.1
1,822,319 - CA264_07870 0.52 +0.4
1,822,322 + CA264_07870 0.52 +0.4
1,822,322 + CA264_07870 0.52 -0.4
1,822,356 + CA264_07870 0.56 -0.2
1,822,409 + CA264_07870 0.62 -0.1
1,822,409 + CA264_07870 0.62 +0.2
1,822,410 - CA264_07870 0.62 -0.8
1,822,410 - CA264_07870 0.62 +0.0
1,822,410 - CA264_07870 0.62 +0.6
1,822,667 + +0.4
1,822,668 - -0.6
1,822,668 - +0.0

Or see this region's nucleotide sequence