Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_06695 and CA264_06700 are separated by 37 nucleotides CA264_06700 and CA264_06705 are separated by 51 nucleotides CA264_06705 and CA264_06710 are separated by 161 nucleotides
CA264_06695: CA264_06695 - hydrolase, at 1,546,451 to 1,547,542
_06695
CA264_06700: CA264_06700 - hypothetical protein, at 1,547,580 to 1,548,464
_06700
CA264_06705: CA264_06705 - hypothetical protein, at 1,548,516 to 1,549,766
_06705
CA264_06710: CA264_06710 - hypothetical protein, at 1,549,928 to 1,551,613
_06710
Position (kb)
1548
1549
1550 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1547.555 kb on + strand at 1547.555 kb on + strand at 1547.556 kb on - strand at 1547.597 kb on + strand at 1547.600 kb on + strand at 1547.600 kb on + strand at 1547.657 kb on - strand at 1547.724 kb on + strand, within CA264_06700 at 1547.867 kb on + strand, within CA264_06700 at 1547.880 kb on + strand, within CA264_06700 at 1547.880 kb on + strand, within CA264_06700 at 1547.904 kb on + strand, within CA264_06700 at 1548.057 kb on - strand, within CA264_06700 at 1548.060 kb on + strand, within CA264_06700 at 1548.193 kb on + strand, within CA264_06700 at 1548.287 kb on - strand, within CA264_06700 at 1548.287 kb on - strand, within CA264_06700 at 1548.296 kb on + strand, within CA264_06700 at 1548.297 kb on - strand, within CA264_06700 at 1548.517 kb on + strand at 1548.555 kb on + strand at 1548.555 kb on + strand at 1548.556 kb on - strand at 1548.635 kb on - strand at 1548.635 kb on - strand at 1548.637 kb on - strand at 1548.637 kb on - strand at 1548.637 kb on - strand at 1548.775 kb on + strand, within CA264_06705 at 1548.776 kb on - strand, within CA264_06705 at 1548.776 kb on - strand, within CA264_06705 at 1548.776 kb on - strand, within CA264_06705 at 1548.776 kb on - strand, within CA264_06705 at 1548.980 kb on + strand, within CA264_06705 at 1548.980 kb on + strand, within CA264_06705 at 1548.982 kb on + strand, within CA264_06705 at 1548.982 kb on + strand, within CA264_06705 at 1548.985 kb on + strand, within CA264_06705 at 1548.986 kb on - strand, within CA264_06705 at 1549.013 kb on + strand, within CA264_06705 at 1549.021 kb on - strand, within CA264_06705 at 1549.083 kb on + strand, within CA264_06705 at 1549.083 kb on + strand, within CA264_06705 at 1549.084 kb on - strand, within CA264_06705 at 1549.084 kb on - strand, within CA264_06705 at 1549.143 kb on + strand, within CA264_06705 at 1549.190 kb on - strand, within CA264_06705 at 1549.190 kb on - strand, within CA264_06705 at 1549.218 kb on + strand, within CA264_06705 at 1549.228 kb on + strand, within CA264_06705 at 1549.229 kb on - strand, within CA264_06705 at 1549.232 kb on + strand, within CA264_06705 at 1549.233 kb on - strand, within CA264_06705 at 1549.244 kb on + strand, within CA264_06705 at 1549.244 kb on + strand, within CA264_06705 at 1549.260 kb on - strand, within CA264_06705 at 1549.270 kb on - strand, within CA264_06705 at 1549.270 kb on - strand, within CA264_06705 at 1549.270 kb on - strand, within CA264_06705 at 1549.276 kb on + strand, within CA264_06705 at 1549.276 kb on + strand, within CA264_06705 at 1549.277 kb on - strand, within CA264_06705 at 1549.277 kb on - strand, within CA264_06705 at 1549.277 kb on - strand, within CA264_06705 at 1549.277 kb on - strand, within CA264_06705 at 1549.287 kb on + strand, within CA264_06705 at 1549.287 kb on + strand, within CA264_06705 at 1549.287 kb on + strand, within CA264_06705 at 1549.351 kb on + strand, within CA264_06705 at 1549.351 kb on + strand, within CA264_06705 at 1549.351 kb on + strand, within CA264_06705 at 1549.352 kb on - strand, within CA264_06705 at 1549.352 kb on - strand, within CA264_06705 at 1549.358 kb on + strand, within CA264_06705 at 1549.404 kb on - strand, within CA264_06705 at 1549.411 kb on + strand, within CA264_06705 at 1549.412 kb on - strand, within CA264_06705 at 1549.418 kb on - strand, within CA264_06705 at 1549.458 kb on - strand, within CA264_06705 at 1549.489 kb on - strand, within CA264_06705 at 1549.558 kb on + strand, within CA264_06705 at 1549.559 kb on - strand, within CA264_06705 at 1549.559 kb on - strand, within CA264_06705 at 1549.583 kb on - strand, within CA264_06705 at 1549.611 kb on + strand, within CA264_06705 at 1549.638 kb on + strand, within CA264_06705 at 1549.767 kb on - strand at 1549.767 kb on - strand at 1549.770 kb on + strand at 1549.771 kb on - strand at 1549.775 kb on + strand at 1549.784 kb on + strand at 1549.785 kb on - strand at 1549.797 kb on + strand at 1549.800 kb on - strand at 1549.846 kb on + strand at 1549.846 kb on + strand at 1549.847 kb on - strand at 1549.847 kb on - strand at 1549.848 kb on + strand at 1549.849 kb on - strand at 1549.852 kb on + strand at 1549.853 kb on - strand at 1549.853 kb on - strand at 1549.853 kb on - strand at 1549.853 kb on - strand at 1549.853 kb on - strand at 1549.855 kb on - strand at 1549.888 kb on - strand at 1549.918 kb on - strand at 1549.923 kb on - strand at 1549.929 kb on + strand at 1549.929 kb on + strand at 1549.930 kb on - strand at 1549.937 kb on - strand at 1549.937 kb on - strand at 1549.940 kb on + strand at 1549.940 kb on + strand at 1549.941 kb on - strand at 1549.941 kb on - strand at 1549.978 kb on + strand at 1549.979 kb on - strand at 1549.997 kb on + strand at 1550.075 kb on - strand at 1550.138 kb on - strand, within CA264_06710 at 1550.138 kb on - strand, within CA264_06710 at 1550.208 kb on - strand, within CA264_06710 at 1550.227 kb on - strand, within CA264_06710 at 1550.283 kb on + strand, within CA264_06710 at 1550.283 kb on + strand, within CA264_06710 at 1550.283 kb on + strand, within CA264_06710 at 1550.283 kb on + strand, within CA264_06710 at 1550.283 kb on + strand, within CA264_06710 at 1550.284 kb on - strand, within CA264_06710 at 1550.284 kb on - strand, within CA264_06710 at 1550.284 kb on - strand, within CA264_06710 at 1550.284 kb on - strand, within CA264_06710 at 1550.341 kb on + strand, within CA264_06710 at 1550.341 kb on + strand, within CA264_06710 at 1550.341 kb on + strand, within CA264_06710 at 1550.342 kb on - strand, within CA264_06710 at 1550.375 kb on - strand, within CA264_06710 at 1550.426 kb on - strand, within CA264_06710 at 1550.426 kb on - strand, within CA264_06710 at 1550.444 kb on - strand, within CA264_06710 at 1550.453 kb on + strand, within CA264_06710 at 1550.485 kb on - strand, within CA264_06710 at 1550.535 kb on + strand, within CA264_06710 at 1550.535 kb on + strand, within CA264_06710 at 1550.535 kb on + strand, within CA264_06710 at 1550.536 kb on - strand, within CA264_06710 at 1550.536 kb on - strand, within CA264_06710 at 1550.536 kb on - strand, within CA264_06710 at 1550.536 kb on - strand, within CA264_06710 at 1550.613 kb on + strand, within CA264_06710 at 1550.613 kb on + strand, within CA264_06710 at 1550.614 kb on - strand, within CA264_06710 at 1550.617 kb on + strand, within CA264_06710 at 1550.617 kb on + strand, within CA264_06710 at 1550.617 kb on + strand, within CA264_06710 at 1550.618 kb on - strand, within CA264_06710 at 1550.668 kb on + strand, within CA264_06710 at 1550.721 kb on + strand, within CA264_06710 at 1550.750 kb on - strand, within CA264_06710 at 1550.756 kb on + strand, within CA264_06710
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 1,547,555 + +0.7 1,547,555 + -0.3 1,547,556 - -0.2 1,547,597 + -0.3 1,547,600 + +0.0 1,547,600 + -0.5 1,547,657 - -0.9 1,547,724 + CA264_06700 0.16 +0.8 1,547,867 + CA264_06700 0.32 -1.4 1,547,880 + CA264_06700 0.34 +1.1 1,547,880 + CA264_06700 0.34 -0.0 1,547,904 + CA264_06700 0.37 +1.7 1,548,057 - CA264_06700 0.54 +1.1 1,548,060 + CA264_06700 0.54 +0.1 1,548,193 + CA264_06700 0.69 +0.3 1,548,287 - CA264_06700 0.80 +0.4 1,548,287 - CA264_06700 0.80 +0.2 1,548,296 + CA264_06700 0.81 -0.2 1,548,297 - CA264_06700 0.81 -1.1 1,548,517 + +1.0 1,548,555 + +0.4 1,548,555 + -1.1 1,548,556 - -0.1 1,548,635 - -0.4 1,548,635 - -0.1 1,548,637 - +0.1 1,548,637 - +1.6 1,548,637 - -0.6 1,548,775 + CA264_06705 0.21 +1.0 1,548,776 - CA264_06705 0.21 +0.6 1,548,776 - CA264_06705 0.21 -0.3 1,548,776 - CA264_06705 0.21 +0.4 1,548,776 - CA264_06705 0.21 -0.2 1,548,980 + CA264_06705 0.37 +0.2 1,548,980 + CA264_06705 0.37 +0.3 1,548,982 + CA264_06705 0.37 +0.8 1,548,982 + CA264_06705 0.37 -0.3 1,548,985 + CA264_06705 0.37 +0.3 1,548,986 - CA264_06705 0.38 +0.3 1,549,013 + CA264_06705 0.40 -0.1 1,549,021 - CA264_06705 0.40 +0.5 1,549,083 + CA264_06705 0.45 -0.2 1,549,083 + CA264_06705 0.45 +0.8 1,549,084 - CA264_06705 0.45 +0.1 1,549,084 - CA264_06705 0.45 +0.3 1,549,143 + CA264_06705 0.50 -0.3 1,549,190 - CA264_06705 0.54 +0.6 1,549,190 - CA264_06705 0.54 +0.1 1,549,218 + CA264_06705 0.56 -0.9 1,549,228 + CA264_06705 0.57 -0.9 1,549,229 - CA264_06705 0.57 -1.2 1,549,232 + CA264_06705 0.57 +1.0 1,549,233 - CA264_06705 0.57 -0.7 1,549,244 + CA264_06705 0.58 -0.2 1,549,244 + CA264_06705 0.58 +0.0 1,549,260 - CA264_06705 0.59 +0.1 1,549,270 - CA264_06705 0.60 +0.2 1,549,270 - CA264_06705 0.60 +0.6 1,549,270 - CA264_06705 0.60 +0.3 1,549,276 + CA264_06705 0.61 -0.0 1,549,276 + CA264_06705 0.61 +0.3 1,549,277 - CA264_06705 0.61 +0.2 1,549,277 - CA264_06705 0.61 -0.8 1,549,277 - CA264_06705 0.61 -0.0 1,549,277 - CA264_06705 0.61 +1.0 1,549,287 + CA264_06705 0.62 -1.8 1,549,287 + CA264_06705 0.62 -0.3 1,549,287 + CA264_06705 0.62 +0.0 1,549,351 + CA264_06705 0.67 -0.6 1,549,351 + CA264_06705 0.67 -0.3 1,549,351 + CA264_06705 0.67 +0.3 1,549,352 - CA264_06705 0.67 +0.6 1,549,352 - CA264_06705 0.67 -0.1 1,549,358 + CA264_06705 0.67 -0.5 1,549,404 - CA264_06705 0.71 +0.7 1,549,411 + CA264_06705 0.72 +2.2 1,549,412 - CA264_06705 0.72 -0.1 1,549,418 - CA264_06705 0.72 +0.2 1,549,458 - CA264_06705 0.75 -1.4 1,549,489 - CA264_06705 0.78 -0.3 1,549,558 + CA264_06705 0.83 -1.3 1,549,559 - CA264_06705 0.83 -1.9 1,549,559 - CA264_06705 0.83 -0.3 1,549,583 - CA264_06705 0.85 -0.5 1,549,611 + CA264_06705 0.88 +2.6 1,549,638 + CA264_06705 0.90 +0.7 1,549,767 - +0.3 1,549,767 - -1.1 1,549,770 + +0.1 1,549,771 - -1.4 1,549,775 + +0.2 1,549,784 + -0.4 1,549,785 - +0.6 1,549,797 + +0.2 1,549,800 - +0.1 1,549,846 + -0.8 1,549,846 + +0.2 1,549,847 - -0.1 1,549,847 - +0.9 1,549,848 + +1.0 1,549,849 - +0.2 1,549,852 + -0.3 1,549,853 - +0.1 1,549,853 - +0.5 1,549,853 - +0.4 1,549,853 - -0.8 1,549,853 - +0.1 1,549,855 - -1.8 1,549,888 - -0.5 1,549,918 - +0.4 1,549,923 - +0.9 1,549,929 + -0.6 1,549,929 + -0.2 1,549,930 - +0.4 1,549,937 - +0.0 1,549,937 - -0.1 1,549,940 + -0.4 1,549,940 + -0.4 1,549,941 - -1.5 1,549,941 - -0.4 1,549,978 + -0.0 1,549,979 - +0.6 1,549,997 + +0.4 1,550,075 - +0.3 1,550,138 - CA264_06710 0.12 -0.7 1,550,138 - CA264_06710 0.12 -0.2 1,550,208 - CA264_06710 0.17 +0.5 1,550,227 - CA264_06710 0.18 -0.2 1,550,283 + CA264_06710 0.21 +0.1 1,550,283 + CA264_06710 0.21 -0.4 1,550,283 + CA264_06710 0.21 -0.2 1,550,283 + CA264_06710 0.21 -0.9 1,550,283 + CA264_06710 0.21 +0.6 1,550,284 - CA264_06710 0.21 -0.6 1,550,284 - CA264_06710 0.21 -0.7 1,550,284 - CA264_06710 0.21 -2.1 1,550,284 - CA264_06710 0.21 -0.5 1,550,341 + CA264_06710 0.24 +0.6 1,550,341 + CA264_06710 0.24 -0.6 1,550,341 + CA264_06710 0.24 -0.8 1,550,342 - CA264_06710 0.25 -0.2 1,550,375 - CA264_06710 0.27 +0.2 1,550,426 - CA264_06710 0.30 +0.2 1,550,426 - CA264_06710 0.30 +1.1 1,550,444 - CA264_06710 0.31 +0.4 1,550,453 + CA264_06710 0.31 -0.2 1,550,485 - CA264_06710 0.33 -0.1 1,550,535 + CA264_06710 0.36 +0.0 1,550,535 + CA264_06710 0.36 -0.5 1,550,535 + CA264_06710 0.36 -0.6 1,550,536 - CA264_06710 0.36 -0.1 1,550,536 - CA264_06710 0.36 -0.6 1,550,536 - CA264_06710 0.36 -1.8 1,550,536 - CA264_06710 0.36 -0.8 1,550,613 + CA264_06710 0.41 +0.6 1,550,613 + CA264_06710 0.41 +0.2 1,550,614 - CA264_06710 0.41 -0.7 1,550,617 + CA264_06710 0.41 +0.3 1,550,617 + CA264_06710 0.41 -1.5 1,550,617 + CA264_06710 0.41 -1.9 1,550,618 - CA264_06710 0.41 -0.3 1,550,668 + CA264_06710 0.44 -0.9 1,550,721 + CA264_06710 0.47 +1.3 1,550,750 - CA264_06710 0.49 -0.1 1,550,756 + CA264_06710 0.49 +0.1
Or see this region's nucleotide sequence