Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04620 and CA264_04625 are separated by 16 nucleotides CA264_04625 and CA264_04630 are separated by 241 nucleotides CA264_04630 and CA264_04635 are separated by 194 nucleotides
CA264_04620: CA264_04620 - succinyl-CoA--3-ketoacid-CoA transferase, at 1,069,253 to 1,069,909
_04620
CA264_04625: CA264_04625 - succinyl-CoA--3-ketoacid-CoA transferase, at 1,069,926 to 1,070,624
_04625
CA264_04630: CA264_04630 - TIGR00341 family protein, at 1,070,866 to 1,072,743
_04630
CA264_04635: CA264_04635 - riboflavin biosynthesis protein RibF, at 1,072,938 to 1,073,870
_04635
Position (kb)
1070
1071
1072
1073 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1069.901 kb on + strand at 1069.901 kb on + strand at 1069.996 kb on + strand, within CA264_04625 at 1070.056 kb on - strand, within CA264_04625 at 1070.201 kb on - strand, within CA264_04625 at 1070.280 kb on + strand, within CA264_04625 at 1070.283 kb on - strand, within CA264_04625 at 1070.338 kb on - strand, within CA264_04625 at 1070.392 kb on + strand, within CA264_04625 at 1070.392 kb on + strand, within CA264_04625 at 1070.392 kb on + strand at 1070.392 kb on + strand, within CA264_04625 at 1070.393 kb on - strand, within CA264_04625 at 1070.433 kb on + strand, within CA264_04625 at 1070.465 kb on + strand, within CA264_04625 at 1070.481 kb on - strand, within CA264_04625 at 1070.481 kb on - strand, within CA264_04625 at 1070.616 kb on - strand at 1070.624 kb on + strand at 1070.625 kb on - strand at 1070.646 kb on + strand at 1070.649 kb on - strand at 1070.649 kb on - strand at 1070.649 kb on - strand at 1070.690 kb on + strand at 1070.698 kb on + strand at 1070.699 kb on - strand at 1070.699 kb on - strand at 1070.707 kb on + strand at 1070.727 kb on + strand at 1070.793 kb on + strand at 1070.830 kb on + strand at 1070.831 kb on - strand at 1070.883 kb on + strand at 1070.938 kb on - strand at 1070.959 kb on + strand at 1070.992 kb on + strand at 1070.993 kb on - strand at 1071.017 kb on - strand at 1071.023 kb on - strand at 1071.023 kb on - strand at 1071.037 kb on - strand at 1071.054 kb on - strand, within CA264_04630 at 1071.231 kb on + strand, within CA264_04630 at 1071.251 kb on - strand, within CA264_04630 at 1071.289 kb on + strand, within CA264_04630 at 1071.289 kb on + strand, within CA264_04630 at 1071.290 kb on - strand, within CA264_04630 at 1071.290 kb on - strand, within CA264_04630 at 1071.291 kb on + strand, within CA264_04630 at 1071.291 kb on + strand, within CA264_04630 at 1071.292 kb on - strand, within CA264_04630 at 1071.292 kb on - strand, within CA264_04630 at 1071.296 kb on - strand, within CA264_04630 at 1071.296 kb on - strand, within CA264_04630 at 1071.296 kb on - strand, within CA264_04630 at 1071.296 kb on - strand, within CA264_04630 at 1071.383 kb on + strand, within CA264_04630 at 1071.384 kb on - strand, within CA264_04630 at 1071.439 kb on - strand, within CA264_04630 at 1071.483 kb on + strand, within CA264_04630 at 1071.484 kb on - strand, within CA264_04630 at 1071.484 kb on - strand, within CA264_04630 at 1071.513 kb on + strand, within CA264_04630 at 1071.565 kb on - strand, within CA264_04630 at 1071.637 kb on - strand, within CA264_04630 at 1071.641 kb on - strand, within CA264_04630 at 1071.806 kb on - strand, within CA264_04630 at 1071.819 kb on - strand, within CA264_04630 at 1071.977 kb on + strand, within CA264_04630 at 1072.000 kb on + strand, within CA264_04630 at 1072.001 kb on - strand, within CA264_04630 at 1072.070 kb on + strand, within CA264_04630 at 1072.376 kb on - strand, within CA264_04630 at 1072.376 kb on - strand, within CA264_04630 at 1072.378 kb on - strand, within CA264_04630 at 1072.533 kb on + strand, within CA264_04630 at 1072.595 kb on + strand at 1072.595 kb on + strand at 1072.596 kb on - strand at 1072.651 kb on + strand at 1072.657 kb on + strand at 1072.658 kb on - strand at 1072.682 kb on - strand at 1072.722 kb on - strand at 1072.726 kb on + strand at 1072.727 kb on - strand at 1072.727 kb on - strand at 1072.727 kb on - strand at 1072.730 kb on - strand at 1072.732 kb on + strand at 1072.732 kb on + strand at 1072.732 kb on + strand at 1072.752 kb on - strand at 1072.774 kb on - strand at 1072.777 kb on + strand at 1072.796 kb on + strand at 1072.797 kb on - strand at 1072.826 kb on - strand at 1072.826 kb on - strand at 1072.844 kb on - strand at 1072.850 kb on - strand at 1072.851 kb on + strand at 1072.852 kb on - strand at 1072.852 kb on - strand at 1072.924 kb on + strand at 1072.925 kb on - strand at 1072.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 1,069,901 + -0.9 1,069,901 + -0.5 1,069,996 + CA264_04625 0.10 -0.8 1,070,056 - CA264_04625 0.19 +0.4 1,070,201 - CA264_04625 0.39 -0.6 1,070,280 + CA264_04625 0.51 -0.9 1,070,283 - CA264_04625 0.51 -0.3 1,070,338 - CA264_04625 0.59 -0.6 1,070,392 + CA264_04625 0.67 -0.4 1,070,392 + CA264_04625 0.67 +0.0 1,070,392 + +1.3 1,070,392 + CA264_04625 0.67 -0.6 1,070,393 - CA264_04625 0.67 +0.1 1,070,433 + CA264_04625 0.73 -0.5 1,070,465 + CA264_04625 0.77 +0.2 1,070,481 - CA264_04625 0.79 -1.3 1,070,481 - CA264_04625 0.79 -1.4 1,070,616 - +0.0 1,070,624 + +0.7 1,070,625 - -0.6 1,070,646 + +1.4 1,070,649 - -0.3 1,070,649 - -0.6 1,070,649 - +0.2 1,070,690 + -0.1 1,070,698 + -0.6 1,070,699 - -0.7 1,070,699 - -1.1 1,070,707 + -0.8 1,070,727 + +1.2 1,070,793 + -0.1 1,070,830 + +0.3 1,070,831 - +1.0 1,070,883 + +1.9 1,070,938 - -0.6 1,070,959 + +0.3 1,070,992 + -0.4 1,070,993 - -0.2 1,071,017 - +0.3 1,071,023 - +0.7 1,071,023 - +0.6 1,071,037 - +0.7 1,071,054 - CA264_04630 0.10 +0.4 1,071,231 + CA264_04630 0.19 +0.1 1,071,251 - CA264_04630 0.21 +0.1 1,071,289 + CA264_04630 0.23 -0.2 1,071,289 + CA264_04630 0.23 -0.4 1,071,290 - CA264_04630 0.23 -0.1 1,071,290 - CA264_04630 0.23 -0.1 1,071,291 + CA264_04630 0.23 -0.7 1,071,291 + CA264_04630 0.23 +0.1 1,071,292 - CA264_04630 0.23 -0.3 1,071,292 - CA264_04630 0.23 +0.4 1,071,296 - CA264_04630 0.23 +0.1 1,071,296 - CA264_04630 0.23 +0.3 1,071,296 - CA264_04630 0.23 +0.1 1,071,296 - CA264_04630 0.23 -0.6 1,071,383 + CA264_04630 0.28 +0.3 1,071,384 - CA264_04630 0.28 -0.1 1,071,439 - CA264_04630 0.31 -0.5 1,071,483 + CA264_04630 0.33 -0.6 1,071,484 - CA264_04630 0.33 -0.1 1,071,484 - CA264_04630 0.33 -0.4 1,071,513 + CA264_04630 0.34 -0.3 1,071,565 - CA264_04630 0.37 -0.4 1,071,637 - CA264_04630 0.41 +0.1 1,071,641 - CA264_04630 0.41 +1.3 1,071,806 - CA264_04630 0.50 +0.0 1,071,819 - CA264_04630 0.51 -0.5 1,071,977 + CA264_04630 0.59 -0.4 1,072,000 + CA264_04630 0.60 +0.4 1,072,001 - CA264_04630 0.60 -1.2 1,072,070 + CA264_04630 0.64 +0.8 1,072,376 - CA264_04630 0.80 -0.6 1,072,376 - CA264_04630 0.80 -0.9 1,072,378 - CA264_04630 0.81 -2.8 1,072,533 + CA264_04630 0.89 +0.1 1,072,595 + +0.1 1,072,595 + +0.2 1,072,596 - -0.4 1,072,651 + -0.3 1,072,657 + -0.4 1,072,658 - -0.1 1,072,682 - +0.5 1,072,722 - +0.8 1,072,726 + +1.7 1,072,727 - -0.2 1,072,727 - -0.5 1,072,727 - +0.2 1,072,730 - -0.1 1,072,732 + -0.6 1,072,732 + -0.2 1,072,732 + -0.3 1,072,752 - -0.2 1,072,774 - -0.5 1,072,777 + -0.6 1,072,796 + -0.4 1,072,797 - -1.6 1,072,826 - -0.5 1,072,826 - -1.2 1,072,844 - -1.2 1,072,850 - +0.1 1,072,851 + -0.1 1,072,852 - -0.4 1,072,852 - -0.2 1,072,924 + +0.3 1,072,925 - +0.4 1,072,940 - +0.2
Or see this region's nucleotide sequence