Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04070 and CA264_04075 are separated by 352 nucleotides CA264_04075 and CA264_04080 are separated by 37 nucleotides CA264_04080 and CA264_04085 are separated by 385 nucleotides
CA264_04070: CA264_04070 - 5S ribosomal RNA, at 943,988 to 944,099
_04070
CA264_04075: CA264_04075 - hypothetical protein, at 944,452 to 944,952
_04075
CA264_04080: CA264_04080 - PAS domain-containing sensor histidine kinase, at 944,990 to 947,020
_04080
CA264_04085: CA264_04085 - short-chain dehydrogenase, at 947,406 to 948,422
_04085
Position (kb) 944
945
946
947
948 Strain fitness (log2 ratio) -2
-1
0
1
2 at 944.336 kb on + strand at 944.376 kb on - strand at 944.392 kb on - strand at 944.399 kb on - strand at 944.413 kb on - strand at 944.444 kb on + strand at 944.445 kb on - strand at 944.445 kb on - strand at 944.445 kb on - strand at 944.451 kb on + strand at 944.451 kb on + strand at 944.451 kb on + strand at 944.452 kb on - strand at 944.452 kb on - strand at 944.576 kb on - strand, within CA264_04075 at 944.578 kb on - strand, within CA264_04075 at 944.599 kb on + strand, within CA264_04075 at 944.600 kb on - strand, within CA264_04075 at 944.633 kb on + strand, within CA264_04075 at 944.633 kb on + strand, within CA264_04075 at 944.633 kb on + strand, within CA264_04075 at 944.717 kb on + strand, within CA264_04075 at 944.718 kb on - strand, within CA264_04075 at 944.718 kb on - strand, within CA264_04075 at 944.732 kb on + strand, within CA264_04075 at 944.784 kb on + strand, within CA264_04075 at 944.863 kb on - strand, within CA264_04075 at 944.893 kb on + strand, within CA264_04075 at 944.958 kb on + strand at 944.959 kb on - strand at 945.004 kb on - strand at 945.029 kb on + strand at 945.029 kb on + strand at 945.081 kb on - strand at 945.087 kb on + strand at 945.088 kb on - strand at 945.088 kb on - strand at 945.088 kb on - strand at 945.088 kb on - strand at 945.095 kb on + strand at 945.096 kb on - strand at 945.151 kb on + strand at 945.151 kb on + strand at 945.182 kb on - strand at 945.182 kb on - strand at 945.182 kb on - strand at 945.232 kb on + strand, within CA264_04080 at 945.265 kb on + strand, within CA264_04080 at 945.266 kb on - strand, within CA264_04080 at 945.274 kb on + strand, within CA264_04080 at 945.288 kb on + strand, within CA264_04080 at 945.289 kb on - strand, within CA264_04080 at 945.290 kb on + strand, within CA264_04080 at 945.291 kb on - strand, within CA264_04080 at 945.302 kb on + strand, within CA264_04080 at 945.302 kb on + strand, within CA264_04080 at 945.302 kb on + strand, within CA264_04080 at 945.302 kb on + strand, within CA264_04080 at 945.302 kb on + strand, within CA264_04080 at 945.303 kb on - strand, within CA264_04080 at 945.328 kb on + strand, within CA264_04080 at 945.431 kb on + strand, within CA264_04080 at 945.515 kb on + strand, within CA264_04080 at 945.515 kb on + strand, within CA264_04080 at 945.606 kb on + strand, within CA264_04080 at 945.606 kb on + strand, within CA264_04080 at 945.606 kb on + strand, within CA264_04080 at 945.607 kb on - strand, within CA264_04080 at 945.607 kb on - strand, within CA264_04080 at 945.610 kb on + strand, within CA264_04080 at 945.610 kb on + strand, within CA264_04080 at 945.610 kb on + strand, within CA264_04080 at 945.745 kb on + strand, within CA264_04080 at 945.746 kb on - strand, within CA264_04080 at 945.758 kb on - strand, within CA264_04080 at 945.786 kb on + strand, within CA264_04080 at 945.787 kb on - strand, within CA264_04080 at 945.787 kb on - strand, within CA264_04080 at 945.787 kb on - strand, within CA264_04080 at 945.802 kb on - strand, within CA264_04080 at 945.891 kb on - strand, within CA264_04080 at 945.891 kb on - strand, within CA264_04080 at 945.924 kb on - strand, within CA264_04080 at 945.947 kb on + strand, within CA264_04080 at 945.950 kb on + strand, within CA264_04080 at 945.950 kb on + strand, within CA264_04080 at 945.950 kb on + strand, within CA264_04080 at 945.967 kb on + strand, within CA264_04080 at 945.968 kb on - strand, within CA264_04080 at 945.984 kb on - strand, within CA264_04080 at 945.984 kb on - strand, within CA264_04080 at 946.001 kb on - strand, within CA264_04080 at 946.004 kb on + strand, within CA264_04080 at 946.004 kb on + strand, within CA264_04080 at 946.004 kb on + strand, within CA264_04080 at 946.004 kb on + strand, within CA264_04080 at 946.004 kb on + strand, within CA264_04080 at 946.004 kb on + strand, within CA264_04080 at 946.005 kb on - strand, within CA264_04080 at 946.005 kb on - strand, within CA264_04080 at 946.007 kb on + strand, within CA264_04080 at 946.007 kb on + strand, within CA264_04080 at 946.007 kb on + strand, within CA264_04080 at 946.011 kb on + strand, within CA264_04080 at 946.011 kb on + strand, within CA264_04080 at 946.089 kb on - strand, within CA264_04080 at 946.123 kb on + strand, within CA264_04080 at 946.123 kb on + strand, within CA264_04080 at 946.128 kb on - strand, within CA264_04080 at 946.128 kb on - strand, within CA264_04080 at 946.128 kb on - strand, within CA264_04080 at 946.128 kb on - strand, within CA264_04080 at 946.161 kb on + strand, within CA264_04080 at 946.161 kb on + strand, within CA264_04080 at 946.162 kb on - strand, within CA264_04080 at 946.162 kb on - strand, within CA264_04080 at 946.171 kb on + strand, within CA264_04080 at 946.171 kb on + strand, within CA264_04080 at 946.172 kb on - strand, within CA264_04080 at 946.173 kb on + strand, within CA264_04080 at 946.235 kb on + strand, within CA264_04080 at 946.235 kb on + strand, within CA264_04080 at 946.236 kb on - strand, within CA264_04080 at 946.236 kb on - strand, within CA264_04080 at 946.238 kb on + strand, within CA264_04080 at 946.241 kb on - strand, within CA264_04080 at 946.241 kb on - strand, within CA264_04080 at 946.247 kb on + strand, within CA264_04080 at 946.248 kb on - strand, within CA264_04080 at 946.462 kb on + strand, within CA264_04080 at 946.539 kb on - strand, within CA264_04080 at 946.589 kb on + strand, within CA264_04080 at 946.625 kb on - strand, within CA264_04080 at 946.678 kb on - strand, within CA264_04080 at 946.731 kb on + strand, within CA264_04080 at 946.731 kb on + strand, within CA264_04080 at 946.732 kb on - strand, within CA264_04080 at 946.787 kb on + strand, within CA264_04080 at 946.857 kb on + strand at 946.871 kb on - strand at 946.878 kb on + strand at 946.878 kb on + strand at 946.878 kb on + strand at 946.878 kb on + strand at 946.878 kb on + strand at 946.878 kb on + strand at 946.878 kb on + strand at 946.879 kb on - strand at 946.879 kb on - strand at 946.879 kb on - strand at 946.879 kb on - strand at 946.879 kb on - strand at 946.879 kb on - strand at 946.879 kb on - strand at 946.879 kb on - strand at 946.879 kb on - strand at 946.881 kb on - strand at 946.881 kb on - strand at 946.900 kb on + strand at 946.900 kb on + strand at 946.923 kb on - strand at 946.935 kb on - strand at 947.009 kb on - strand at 947.122 kb on + strand at 947.136 kb on + strand at 947.136 kb on + strand at 947.142 kb on - strand at 947.149 kb on - strand at 947.149 kb on - strand at 947.221 kb on + strand at 947.234 kb on - strand at 947.234 kb on - strand at 947.234 kb on - strand at 947.234 kb on - strand at 947.235 kb on + strand at 947.235 kb on + strand at 947.235 kb on + strand at 947.235 kb on + strand at 947.252 kb on + strand at 947.253 kb on - strand at 947.255 kb on + strand at 947.255 kb on + strand at 947.316 kb on + strand at 947.364 kb on - strand at 947.487 kb on - strand at 947.554 kb on - strand, within CA264_04085 at 947.633 kb on + strand, within CA264_04085 at 947.671 kb on + strand, within CA264_04085 at 947.671 kb on + strand, within CA264_04085 at 947.671 kb on + strand, within CA264_04085 at 947.672 kb on - strand, within CA264_04085 at 947.672 kb on - strand, within CA264_04085 at 947.672 kb on - strand, within CA264_04085 at 947.709 kb on + strand, within CA264_04085 at 947.776 kb on + strand, within CA264_04085 at 947.776 kb on + strand, within CA264_04085 at 947.777 kb on - strand, within CA264_04085 at 947.796 kb on + strand, within CA264_04085 at 947.813 kb on - strand, within CA264_04085 at 947.813 kb on - strand, within CA264_04085 at 947.843 kb on + strand, within CA264_04085 at 947.844 kb on - strand, within CA264_04085 at 947.929 kb on - strand, within CA264_04085 at 947.950 kb on + strand, within CA264_04085 at 947.950 kb on + strand, within CA264_04085 at 947.950 kb on + strand, within CA264_04085 at 947.951 kb on - strand, within CA264_04085 at 947.951 kb on - strand, within CA264_04085 at 947.951 kb on - strand, within CA264_04085 at 947.970 kb on - strand, within CA264_04085
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 944,336 + -1.2 944,376 - +0.0 944,392 - +0.2 944,399 - -0.1 944,413 - -0.0 944,444 + -0.2 944,445 - +0.2 944,445 - +1.0 944,445 - +0.6 944,451 + -0.1 944,451 + +0.3 944,451 + -0.5 944,452 - -0.3 944,452 - +0.6 944,576 - CA264_04075 0.25 -0.7 944,578 - CA264_04075 0.25 -0.2 944,599 + CA264_04075 0.29 -0.4 944,600 - CA264_04075 0.30 +0.5 944,633 + CA264_04075 0.36 +0.7 944,633 + CA264_04075 0.36 +1.5 944,633 + CA264_04075 0.36 -0.4 944,717 + CA264_04075 0.53 -0.8 944,718 - CA264_04075 0.53 -0.5 944,718 - CA264_04075 0.53 -0.3 944,732 + CA264_04075 0.56 +1.0 944,784 + CA264_04075 0.66 -0.1 944,863 - CA264_04075 0.82 -0.2 944,893 + CA264_04075 0.88 -0.3 944,958 + +0.3 944,959 - +0.0 945,004 - -0.1 945,029 + -0.5 945,029 + -0.1 945,081 - +0.1 945,087 + -0.0 945,088 - -0.8 945,088 - -0.3 945,088 - +1.3 945,088 - -0.4 945,095 + +0.3 945,096 - -0.3 945,151 + +2.3 945,151 + +1.3 945,182 - +0.2 945,182 - -0.6 945,182 - +0.3 945,232 + CA264_04080 0.12 +0.1 945,265 + CA264_04080 0.14 +1.6 945,266 - CA264_04080 0.14 +0.0 945,274 + CA264_04080 0.14 -0.8 945,288 + CA264_04080 0.15 +0.2 945,289 - CA264_04080 0.15 -0.7 945,290 + CA264_04080 0.15 -0.2 945,291 - CA264_04080 0.15 -0.1 945,302 + CA264_04080 0.15 -0.1 945,302 + CA264_04080 0.15 -0.2 945,302 + CA264_04080 0.15 -0.4 945,302 + CA264_04080 0.15 +0.3 945,302 + CA264_04080 0.15 +0.2 945,303 - CA264_04080 0.15 -0.6 945,328 + CA264_04080 0.17 -0.1 945,431 + CA264_04080 0.22 +0.4 945,515 + CA264_04080 0.26 +0.1 945,515 + CA264_04080 0.26 +0.2 945,606 + CA264_04080 0.30 +0.0 945,606 + CA264_04080 0.30 -0.2 945,606 + CA264_04080 0.30 +0.5 945,607 - CA264_04080 0.30 -0.2 945,607 - CA264_04080 0.30 +0.1 945,610 + CA264_04080 0.31 -0.0 945,610 + CA264_04080 0.31 +0.3 945,610 + CA264_04080 0.31 +0.2 945,745 + CA264_04080 0.37 +0.5 945,746 - CA264_04080 0.37 -0.5 945,758 - CA264_04080 0.38 -0.4 945,786 + CA264_04080 0.39 -0.5 945,787 - CA264_04080 0.39 +0.0 945,787 - CA264_04080 0.39 +0.0 945,787 - CA264_04080 0.39 +0.0 945,802 - CA264_04080 0.40 +0.5 945,891 - CA264_04080 0.44 -0.5 945,891 - CA264_04080 0.44 +0.8 945,924 - CA264_04080 0.46 +0.6 945,947 + CA264_04080 0.47 -0.2 945,950 + CA264_04080 0.47 -0.5 945,950 + CA264_04080 0.47 +0.8 945,950 + CA264_04080 0.47 -0.2 945,967 + CA264_04080 0.48 -0.4 945,968 - CA264_04080 0.48 -0.1 945,984 - CA264_04080 0.49 +0.6 945,984 - CA264_04080 0.49 -0.1 946,001 - CA264_04080 0.50 +0.7 946,004 + CA264_04080 0.50 +0.2 946,004 + CA264_04080 0.50 -1.3 946,004 + CA264_04080 0.50 +0.3 946,004 + CA264_04080 0.50 +0.2 946,004 + CA264_04080 0.50 +0.2 946,004 + CA264_04080 0.50 -0.6 946,005 - CA264_04080 0.50 +0.3 946,005 - CA264_04080 0.50 -0.3 946,007 + CA264_04080 0.50 +0.6 946,007 + CA264_04080 0.50 -0.1 946,007 + CA264_04080 0.50 +0.1 946,011 + CA264_04080 0.50 +0.3 946,011 + CA264_04080 0.50 +0.9 946,089 - CA264_04080 0.54 +0.2 946,123 + CA264_04080 0.56 -0.1 946,123 + CA264_04080 0.56 -0.0 946,128 - CA264_04080 0.56 -0.0 946,128 - CA264_04080 0.56 +1.3 946,128 - CA264_04080 0.56 +0.0 946,128 - CA264_04080 0.56 +1.9 946,161 + CA264_04080 0.58 +0.1 946,161 + CA264_04080 0.58 -0.1 946,162 - CA264_04080 0.58 +0.0 946,162 - CA264_04080 0.58 -0.2 946,171 + CA264_04080 0.58 -1.8 946,171 + CA264_04080 0.58 -0.4 946,172 - CA264_04080 0.58 -0.3 946,173 + CA264_04080 0.58 -0.0 946,235 + CA264_04080 0.61 -0.5 946,235 + CA264_04080 0.61 +0.4 946,236 - CA264_04080 0.61 -0.1 946,236 - CA264_04080 0.61 -0.4 946,238 + CA264_04080 0.61 -0.2 946,241 - CA264_04080 0.62 -2.2 946,241 - CA264_04080 0.62 -0.1 946,247 + CA264_04080 0.62 +0.2 946,248 - CA264_04080 0.62 +0.1 946,462 + CA264_04080 0.72 +1.6 946,539 - CA264_04080 0.76 -0.3 946,589 + CA264_04080 0.79 -0.1 946,625 - CA264_04080 0.81 +0.3 946,678 - CA264_04080 0.83 +0.5 946,731 + CA264_04080 0.86 -0.3 946,731 + CA264_04080 0.86 +1.3 946,732 - CA264_04080 0.86 -0.0 946,787 + CA264_04080 0.88 +0.1 946,857 + -0.1 946,871 - +0.1 946,878 + -0.3 946,878 + -0.5 946,878 + +0.2 946,878 + -0.8 946,878 + +0.1 946,878 + -0.4 946,878 + +0.6 946,879 - -1.0 946,879 - +0.2 946,879 - +1.0 946,879 - -0.2 946,879 - +0.7 946,879 - +0.3 946,879 - -0.3 946,879 - +0.2 946,879 - +0.3 946,881 - +0.8 946,881 - +0.1 946,900 + -0.3 946,900 + -1.5 946,923 - -0.1 946,935 - -0.0 947,009 - -0.3 947,122 + -0.7 947,136 + -1.1 947,136 + +0.0 947,142 - -0.5 947,149 - -0.2 947,149 - -0.2 947,221 + +0.1 947,234 - +0.7 947,234 - -0.3 947,234 - -1.9 947,234 - -0.6 947,235 + +0.0 947,235 + +1.1 947,235 + -0.3 947,235 + +0.1 947,252 + +0.2 947,253 - +0.5 947,255 + -0.5 947,255 + -0.5 947,316 + -1.7 947,364 - -0.3 947,487 - +0.4 947,554 - CA264_04085 0.15 +0.2 947,633 + CA264_04085 0.22 +0.9 947,671 + CA264_04085 0.26 -0.4 947,671 + CA264_04085 0.26 -1.7 947,671 + CA264_04085 0.26 -1.1 947,672 - CA264_04085 0.26 +0.0 947,672 - CA264_04085 0.26 -0.7 947,672 - CA264_04085 0.26 +0.3 947,709 + CA264_04085 0.30 -0.6 947,776 + CA264_04085 0.36 +0.5 947,776 + CA264_04085 0.36 +0.3 947,777 - CA264_04085 0.36 +0.2 947,796 + CA264_04085 0.38 -0.4 947,813 - CA264_04085 0.40 -0.7 947,813 - CA264_04085 0.40 -2.5 947,843 + CA264_04085 0.43 +1.0 947,844 - CA264_04085 0.43 +0.3 947,929 - CA264_04085 0.51 -0.4 947,950 + CA264_04085 0.53 +0.1 947,950 + CA264_04085 0.53 +0.9 947,950 + CA264_04085 0.53 -0.1 947,951 - CA264_04085 0.54 +0.0 947,951 - CA264_04085 0.54 -0.4 947,951 - CA264_04085 0.54 -0.5 947,970 - CA264_04085 0.55 -1.0
Or see this region's nucleotide sequence