Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03240

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03235 and CA264_03240 overlap by 14 nucleotidesCA264_03240 and CA264_03245 are separated by 44 nucleotidesCA264_03245 and CA264_03250 are separated by 38 nucleotides CA264_03235: CA264_03235 - hypothetical protein, at 761,481 to 762,785 _03235 CA264_03240: CA264_03240 - metal transporter, at 762,772 to 764,670 _03240 CA264_03245: CA264_03245 - four helix bundle protein, at 764,715 to 765,092 _03245 CA264_03250: CA264_03250 - metal transporter, at 765,131 to 766,405 _03250 Position (kb) 762 763 764 765Strain fitness (log2 ratio) -2 -1 0 1 2at 761.812 kb on + strand, within CA264_03235at 761.812 kb on + strand, within CA264_03235at 761.812 kb on + strand, within CA264_03235at 762.019 kb on + strand, within CA264_03235at 762.027 kb on - strand, within CA264_03235at 762.077 kb on + strand, within CA264_03235at 762.168 kb on + strand, within CA264_03235at 762.168 kb on + strand, within CA264_03235at 762.169 kb on - strand, within CA264_03235at 762.196 kb on + strand, within CA264_03235at 762.197 kb on - strand, within CA264_03235at 762.197 kb on - strand, within CA264_03235at 762.223 kb on + strand, within CA264_03235at 762.223 kb on + strand, within CA264_03235at 762.229 kb on + strand, within CA264_03235at 762.254 kb on + strand, within CA264_03235at 762.254 kb on + strand, within CA264_03235at 762.254 kb on + strand, within CA264_03235at 762.255 kb on - strand, within CA264_03235at 762.256 kb on + strand, within CA264_03235at 762.256 kb on + strand, within CA264_03235at 762.257 kb on - strand, within CA264_03235at 762.323 kb on - strand, within CA264_03235at 762.323 kb on - strand, within CA264_03235at 762.323 kb on - strand, within CA264_03235at 762.345 kb on + strand, within CA264_03235at 762.355 kb on + strand, within CA264_03235at 762.355 kb on + strand, within CA264_03235at 762.400 kb on + strand, within CA264_03235at 762.400 kb on + strand, within CA264_03235at 762.401 kb on - strand, within CA264_03235at 762.463 kb on + strand, within CA264_03235at 762.463 kb on + strand, within CA264_03235at 762.463 kb on + strand, within CA264_03235at 762.463 kb on + strand, within CA264_03235at 762.464 kb on - strand, within CA264_03235at 762.490 kb on - strand, within CA264_03235at 762.531 kb on + strand, within CA264_03235at 762.598 kb on + strand, within CA264_03235at 762.599 kb on - strand, within CA264_03235at 762.599 kb on - strand, within CA264_03235at 762.599 kb on - strand, within CA264_03235at 762.696 kb on + strandat 762.764 kb on + strandat 762.764 kb on + strandat 762.764 kb on + strandat 762.764 kb on + strandat 762.764 kb on + strandat 762.764 kb on + strandat 762.764 kb on + strandat 762.765 kb on - strandat 762.767 kb on - strandat 762.774 kb on - strandat 762.781 kb on - strandat 762.788 kb on + strandat 762.788 kb on + strandat 762.789 kb on - strandat 762.822 kb on - strandat 762.879 kb on + strandat 763.024 kb on + strand, within CA264_03240at 763.025 kb on - strand, within CA264_03240at 763.028 kb on + strand, within CA264_03240at 763.028 kb on + strand, within CA264_03240at 763.109 kb on + strand, within CA264_03240at 763.109 kb on + strand, within CA264_03240at 763.114 kb on + strand, within CA264_03240at 763.114 kb on + strand, within CA264_03240at 763.114 kb on + strand, within CA264_03240at 763.196 kb on + strand, within CA264_03240at 763.202 kb on + strand, within CA264_03240at 763.202 kb on + strand, within CA264_03240at 763.203 kb on - strand, within CA264_03240at 763.203 kb on - strand, within CA264_03240at 763.204 kb on + strand, within CA264_03240at 763.207 kb on + strand, within CA264_03240at 763.207 kb on + strand, within CA264_03240at 763.207 kb on + strand, within CA264_03240at 763.208 kb on - strand, within CA264_03240at 763.208 kb on - strand, within CA264_03240at 763.209 kb on + strand, within CA264_03240at 763.210 kb on - strand, within CA264_03240at 763.237 kb on + strand, within CA264_03240at 763.238 kb on - strand, within CA264_03240at 763.239 kb on + strand, within CA264_03240at 763.243 kb on + strand, within CA264_03240at 763.243 kb on + strand, within CA264_03240at 763.275 kb on + strand, within CA264_03240at 763.386 kb on - strand, within CA264_03240at 763.388 kb on + strand, within CA264_03240at 763.401 kb on + strand, within CA264_03240at 763.401 kb on + strand, within CA264_03240at 763.402 kb on - strand, within CA264_03240at 763.420 kb on + strand, within CA264_03240at 763.541 kb on - strand, within CA264_03240at 763.642 kb on + strand, within CA264_03240at 763.642 kb on + strand, within CA264_03240at 763.686 kb on + strand, within CA264_03240at 763.686 kb on + strand, within CA264_03240at 763.687 kb on - strand, within CA264_03240at 763.711 kb on + strand, within CA264_03240at 763.711 kb on + strand, within CA264_03240at 763.811 kb on + strand, within CA264_03240at 763.811 kb on + strand, within CA264_03240at 763.812 kb on - strand, within CA264_03240at 763.852 kb on + strand, within CA264_03240at 763.853 kb on - strand, within CA264_03240at 763.896 kb on - strand, within CA264_03240at 763.897 kb on + strand, within CA264_03240at 763.897 kb on + strand, within CA264_03240at 763.897 kb on + strand, within CA264_03240at 763.898 kb on - strand, within CA264_03240at 763.998 kb on + strand, within CA264_03240at 764.086 kb on - strand, within CA264_03240at 764.147 kb on - strand, within CA264_03240at 764.212 kb on + strand, within CA264_03240at 764.245 kb on - strand, within CA264_03240at 764.269 kb on - strand, within CA264_03240at 764.493 kb on + strandat 764.493 kb on + strandat 764.497 kb on + strandat 764.498 kb on - strandat 764.498 kb on - strandat 764.498 kb on - strandat 764.499 kb on + strandat 764.499 kb on + strandat 764.592 kb on + strandat 764.790 kb on - strand, within CA264_03245at 764.799 kb on - strand, within CA264_03245at 764.867 kb on + strand, within CA264_03245at 764.867 kb on + strand, within CA264_03245at 764.867 kb on + strand, within CA264_03245at 764.868 kb on - strand, within CA264_03245at 764.868 kb on - strand, within CA264_03245at 764.868 kb on - strand, within CA264_03245at 764.868 kb on - strand, within CA264_03245at 764.871 kb on + strand, within CA264_03245at 764.968 kb on - strand, within CA264_03245at 764.973 kb on - strand, within CA264_03245at 765.077 kb on + strandat 765.402 kb on - strand, within CA264_03250at 765.412 kb on + strand, within CA264_03250at 765.442 kb on - strand, within CA264_03250at 765.483 kb on - strand, within CA264_03250

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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761,812 + CA264_03235 0.25 -1.2
761,812 + CA264_03235 0.25 -0.3
761,812 + CA264_03235 0.25 +0.7
762,019 + CA264_03235 0.41 +0.1
762,027 - CA264_03235 0.42 +0.3
762,077 + CA264_03235 0.46 -0.3
762,168 + CA264_03235 0.53 +0.1
762,168 + CA264_03235 0.53 +0.5
762,169 - CA264_03235 0.53 +0.8
762,196 + CA264_03235 0.55 +0.4
762,197 - CA264_03235 0.55 -0.2
762,197 - CA264_03235 0.55 -0.3
762,223 + CA264_03235 0.57 +0.2
762,223 + CA264_03235 0.57 -0.6
762,229 + CA264_03235 0.57 +0.4
762,254 + CA264_03235 0.59 +0.2
762,254 + CA264_03235 0.59 +0.6
762,254 + CA264_03235 0.59 +0.9
762,255 - CA264_03235 0.59 -0.6
762,256 + CA264_03235 0.59 -0.8
762,256 + CA264_03235 0.59 +0.7
762,257 - CA264_03235 0.59 -0.7
762,323 - CA264_03235 0.65 -0.0
762,323 - CA264_03235 0.65 +0.0
762,323 - CA264_03235 0.65 +0.1
762,345 + CA264_03235 0.66 -1.3
762,355 + CA264_03235 0.67 -1.9
762,355 + CA264_03235 0.67 -0.8
762,400 + CA264_03235 0.70 -1.0
762,400 + CA264_03235 0.70 -0.3
762,401 - CA264_03235 0.70 -0.2
762,463 + CA264_03235 0.75 +0.2
762,463 + CA264_03235 0.75 -0.3
762,463 + CA264_03235 0.75 -0.7
762,463 + CA264_03235 0.75 -0.2
762,464 - CA264_03235 0.75 +0.2
762,490 - CA264_03235 0.77 +0.8
762,531 + CA264_03235 0.80 -0.2
762,598 + CA264_03235 0.86 +0.3
762,599 - CA264_03235 0.86 +0.6
762,599 - CA264_03235 0.86 +0.1
762,599 - CA264_03235 0.86 +0.7
762,696 + +0.4
762,764 + +0.9
762,764 + +0.2
762,764 + -0.7
762,764 + -0.4
762,764 + +0.5
762,764 + -0.8
762,764 + +0.6
762,765 - -0.3
762,767 - +0.5
762,774 - -1.2
762,781 - -0.4
762,788 + -1.0
762,788 + -0.6
762,789 - -0.0
762,822 - +0.5
762,879 + -0.2
763,024 + CA264_03240 0.13 +2.5
763,025 - CA264_03240 0.13 -1.6
763,028 + CA264_03240 0.13 +0.2
763,028 + CA264_03240 0.13 -0.2
763,109 + CA264_03240 0.18 -0.5
763,109 + CA264_03240 0.18 -0.5
763,114 + CA264_03240 0.18 +0.6
763,114 + CA264_03240 0.18 -1.0
763,114 + CA264_03240 0.18 +0.1
763,196 + CA264_03240 0.22 +0.1
763,202 + CA264_03240 0.23 -0.0
763,202 + CA264_03240 0.23 +1.0
763,203 - CA264_03240 0.23 +0.4
763,203 - CA264_03240 0.23 -0.9
763,204 + CA264_03240 0.23 -0.2
763,207 + CA264_03240 0.23 +0.3
763,207 + CA264_03240 0.23 -0.0
763,207 + CA264_03240 0.23 -0.3
763,208 - CA264_03240 0.23 -1.3
763,208 - CA264_03240 0.23 +0.4
763,209 + CA264_03240 0.23 +0.2
763,210 - CA264_03240 0.23 -1.4
763,237 + CA264_03240 0.24 -0.2
763,238 - CA264_03240 0.25 -0.1
763,239 + CA264_03240 0.25 -0.2
763,243 + CA264_03240 0.25 -0.6
763,243 + CA264_03240 0.25 -0.9
763,275 + CA264_03240 0.26 +0.0
763,386 - CA264_03240 0.32 -0.2
763,388 + CA264_03240 0.32 +0.0
763,401 + CA264_03240 0.33 +0.8
763,401 + CA264_03240 0.33 -0.7
763,402 - CA264_03240 0.33 -0.5
763,420 + CA264_03240 0.34 -0.5
763,541 - CA264_03240 0.40 -0.6
763,642 + CA264_03240 0.46 -0.2
763,642 + CA264_03240 0.46 +0.5
763,686 + CA264_03240 0.48 -0.4
763,686 + CA264_03240 0.48 -0.9
763,687 - CA264_03240 0.48 +0.5
763,711 + CA264_03240 0.49 +1.3
763,711 + CA264_03240 0.49 -0.2
763,811 + CA264_03240 0.55 -0.3
763,811 + CA264_03240 0.55 -0.5
763,812 - CA264_03240 0.55 -2.0
763,852 + CA264_03240 0.57 -0.5
763,853 - CA264_03240 0.57 -0.5
763,896 - CA264_03240 0.59 -0.4
763,897 + CA264_03240 0.59 +0.3
763,897 + CA264_03240 0.59 -0.2
763,897 + CA264_03240 0.59 +0.6
763,898 - CA264_03240 0.59 -0.1
763,998 + CA264_03240 0.65 +0.1
764,086 - CA264_03240 0.69 +0.2
764,147 - CA264_03240 0.72 -1.2
764,212 + CA264_03240 0.76 -0.5
764,245 - CA264_03240 0.78 -0.8
764,269 - CA264_03240 0.79 -0.7
764,493 + +0.7
764,493 + +0.1
764,497 + +0.6
764,498 - -0.9
764,498 - +0.1
764,498 - -0.3
764,499 + +0.6
764,499 + -0.5
764,592 + -0.3
764,790 - CA264_03245 0.20 -0.4
764,799 - CA264_03245 0.22 +0.9
764,867 + CA264_03245 0.40 -1.2
764,867 + CA264_03245 0.40 +0.3
764,867 + CA264_03245 0.40 +0.2
764,868 - CA264_03245 0.40 -0.4
764,868 - CA264_03245 0.40 +0.1
764,868 - CA264_03245 0.40 -0.0
764,868 - CA264_03245 0.40 +0.3
764,871 + CA264_03245 0.41 -0.4
764,968 - CA264_03245 0.67 +0.9
764,973 - CA264_03245 0.68 -0.9
765,077 + -0.1
765,402 - CA264_03250 0.21 -0.9
765,412 + CA264_03250 0.22 +0.2
765,442 - CA264_03250 0.24 -0.9
765,483 - CA264_03250 0.28 +0.4

Or see this region's nucleotide sequence