Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03035

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03030 and CA264_03035 are separated by 209 nucleotidesCA264_03035 and CA264_03040 are separated by 82 nucleotides CA264_03030: CA264_03030 - T9SS C-terminal target domain-containing protein, at 699,941 to 702,130 _03030 CA264_03035: CA264_03035 - T9SS C-terminal target domain-containing protein, at 702,340 to 705,885 _03035 CA264_03040: CA264_03040 - hypothetical protein, at 705,968 to 708,811 _03040 Position (kb) 702 703 704 705 706Strain fitness (log2 ratio) -2 -1 0 1 2at 701.369 kb on + strand, within CA264_03030at 701.369 kb on + strand, within CA264_03030at 701.369 kb on + strand, within CA264_03030at 701.370 kb on - strand, within CA264_03030at 701.370 kb on - strand, within CA264_03030at 701.405 kb on - strand, within CA264_03030at 701.408 kb on + strand, within CA264_03030at 701.408 kb on + strand, within CA264_03030at 701.478 kb on - strand, within CA264_03030at 701.499 kb on + strand, within CA264_03030at 701.558 kb on + strand, within CA264_03030at 701.558 kb on + strand, within CA264_03030at 701.559 kb on - strand, within CA264_03030at 701.729 kb on - strand, within CA264_03030at 701.744 kb on + strand, within CA264_03030at 701.747 kb on - strand, within CA264_03030at 701.758 kb on + strand, within CA264_03030at 701.758 kb on + strand, within CA264_03030at 701.760 kb on + strand, within CA264_03030at 701.760 kb on + strand, within CA264_03030at 701.787 kb on - strand, within CA264_03030at 701.794 kb on + strand, within CA264_03030at 701.819 kb on + strand, within CA264_03030at 701.820 kb on - strand, within CA264_03030at 701.840 kb on - strand, within CA264_03030at 701.840 kb on - strand, within CA264_03030at 701.883 kb on - strand, within CA264_03030at 701.899 kb on - strand, within CA264_03030at 702.015 kb on - strandat 702.068 kb on + strandat 702.070 kb on + strandat 702.071 kb on - strandat 702.189 kb on + strandat 702.189 kb on + strandat 702.195 kb on + strandat 702.196 kb on - strandat 702.198 kb on - strandat 702.198 kb on - strandat 702.204 kb on - strandat 702.213 kb on + strandat 702.214 kb on - strandat 702.217 kb on + strandat 702.241 kb on - strandat 702.431 kb on + strandat 702.439 kb on - strandat 702.450 kb on + strandat 702.451 kb on - strandat 702.451 kb on - strandat 702.463 kb on - strandat 702.463 kb on - strandat 702.489 kb on + strandat 702.490 kb on - strandat 702.571 kb on + strandat 702.571 kb on + strandat 702.572 kb on - strandat 702.572 kb on - strandat 702.656 kb on + strandat 702.656 kb on + strandat 702.728 kb on - strand, within CA264_03035at 702.740 kb on + strand, within CA264_03035at 702.740 kb on + strand, within CA264_03035at 702.781 kb on + strand, within CA264_03035at 702.781 kb on + strand, within CA264_03035at 702.782 kb on - strand, within CA264_03035at 702.782 kb on - strand, within CA264_03035at 702.782 kb on - strand, within CA264_03035at 702.782 kb on - strand, within CA264_03035at 702.782 kb on - strand, within CA264_03035at 702.782 kb on - strand, within CA264_03035at 702.803 kb on - strand, within CA264_03035at 702.880 kb on - strand, within CA264_03035at 702.912 kb on + strand, within CA264_03035at 702.922 kb on - strand, within CA264_03035at 702.925 kb on + strand, within CA264_03035at 702.926 kb on - strand, within CA264_03035at 702.926 kb on - strand, within CA264_03035at 702.926 kb on - strand, within CA264_03035at 702.926 kb on - strand, within CA264_03035at 703.091 kb on + strand, within CA264_03035at 703.124 kb on + strand, within CA264_03035at 703.140 kb on + strand, within CA264_03035at 703.196 kb on - strand, within CA264_03035at 703.196 kb on - strand, within CA264_03035at 703.196 kb on - strand, within CA264_03035at 703.196 kb on - strand, within CA264_03035at 703.355 kb on + strand, within CA264_03035at 703.374 kb on + strand, within CA264_03035at 703.375 kb on - strand, within CA264_03035at 703.420 kb on + strand, within CA264_03035at 703.421 kb on - strand, within CA264_03035at 703.421 kb on - strand, within CA264_03035at 703.421 kb on - strand, within CA264_03035at 703.423 kb on + strand, within CA264_03035at 703.498 kb on + strand, within CA264_03035at 703.498 kb on + strand, within CA264_03035at 703.509 kb on - strand, within CA264_03035at 703.547 kb on - strand, within CA264_03035at 703.547 kb on - strand, within CA264_03035at 703.559 kb on - strand, within CA264_03035at 703.597 kb on - strand, within CA264_03035at 703.825 kb on + strand, within CA264_03035at 703.826 kb on - strand, within CA264_03035at 703.966 kb on + strand, within CA264_03035at 703.967 kb on - strand, within CA264_03035at 703.967 kb on - strand, within CA264_03035at 703.970 kb on - strand, within CA264_03035at 703.970 kb on - strand, within CA264_03035at 703.978 kb on + strand, within CA264_03035at 704.008 kb on + strand, within CA264_03035at 704.008 kb on + strand, within CA264_03035at 704.009 kb on - strand, within CA264_03035at 704.009 kb on - strand, within CA264_03035at 704.128 kb on + strand, within CA264_03035at 704.128 kb on + strand, within CA264_03035at 704.128 kb on + strand, within CA264_03035at 704.214 kb on + strand, within CA264_03035at 704.214 kb on + strand, within CA264_03035at 704.214 kb on + strand, within CA264_03035at 704.309 kb on + strand, within CA264_03035at 704.309 kb on + strand, within CA264_03035at 704.309 kb on + strand, within CA264_03035at 704.357 kb on - strand, within CA264_03035at 704.410 kb on + strand, within CA264_03035at 704.410 kb on + strand, within CA264_03035at 704.411 kb on - strand, within CA264_03035at 704.492 kb on + strand, within CA264_03035at 704.493 kb on - strand, within CA264_03035at 704.517 kb on + strand, within CA264_03035at 704.517 kb on + strand, within CA264_03035at 704.518 kb on - strand, within CA264_03035at 704.522 kb on - strand, within CA264_03035at 704.546 kb on + strand, within CA264_03035at 704.723 kb on + strand, within CA264_03035at 704.729 kb on - strand, within CA264_03035at 704.729 kb on - strand, within CA264_03035at 704.743 kb on - strand, within CA264_03035at 704.776 kb on - strand, within CA264_03035at 704.776 kb on - strand, within CA264_03035at 704.810 kb on - strand, within CA264_03035at 704.927 kb on + strand, within CA264_03035at 704.927 kb on + strand, within CA264_03035at 704.932 kb on + strand, within CA264_03035at 704.933 kb on - strand, within CA264_03035at 704.965 kb on + strand, within CA264_03035at 704.967 kb on + strand, within CA264_03035at 704.968 kb on - strand, within CA264_03035at 704.972 kb on - strand, within CA264_03035at 704.979 kb on + strand, within CA264_03035at 704.980 kb on - strand, within CA264_03035at 704.997 kb on - strand, within CA264_03035at 705.054 kb on + strand, within CA264_03035at 705.079 kb on + strand, within CA264_03035at 705.079 kb on + strand, within CA264_03035at 705.079 kb on + strand, within CA264_03035at 705.080 kb on - strand, within CA264_03035at 705.080 kb on - strand, within CA264_03035at 705.080 kb on - strand, within CA264_03035at 705.080 kb on - strand, within CA264_03035at 705.166 kb on - strand, within CA264_03035at 705.312 kb on - strand, within CA264_03035at 705.331 kb on + strand, within CA264_03035at 705.332 kb on - strand, within CA264_03035at 705.332 kb on - strand, within CA264_03035at 705.377 kb on - strand, within CA264_03035at 705.377 kb on - strand, within CA264_03035at 705.457 kb on + strand, within CA264_03035at 705.457 kb on + strand, within CA264_03035at 705.457 kb on + strand, within CA264_03035at 705.508 kb on - strand, within CA264_03035at 705.512 kb on + strand, within CA264_03035at 705.512 kb on + strand, within CA264_03035at 705.512 kb on + strand, within CA264_03035at 705.513 kb on - strand, within CA264_03035at 705.543 kb on - strandat 705.543 kb on - strandat 705.543 kb on - strandat 705.549 kb on + strandat 705.550 kb on - strandat 705.687 kb on - strandat 705.726 kb on + strandat 705.727 kb on - strandat 705.733 kb on - strandat 705.809 kb on + strandat 705.809 kb on + strandat 705.810 kb on - strandat 705.810 kb on - strandat 705.821 kb on + strandat 705.823 kb on + strandat 705.824 kb on - strandat 705.949 kb on - strandat 705.985 kb on + strandat 705.985 kb on + strandat 706.015 kb on + strandat 706.016 kb on - strandat 706.017 kb on + strandat 706.018 kb on - strandat 706.029 kb on + strandat 706.029 kb on + strandat 706.029 kb on + strandat 706.029 kb on + strandat 706.030 kb on - strandat 706.030 kb on - strandat 706.030 kb on - strandat 706.030 kb on - strandat 706.101 kb on + strandat 706.107 kb on - strandat 706.107 kb on - strandat 706.107 kb on - strandat 706.149 kb on - strandat 706.149 kb on - strandat 706.149 kb on - strandat 706.149 kb on - strandat 706.200 kb on + strandat 706.200 kb on + strandat 706.330 kb on + strand, within CA264_03040at 706.377 kb on - strand, within CA264_03040at 706.837 kb on + strand, within CA264_03040

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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701,369 + CA264_03030 0.65 -0.2
701,369 + CA264_03030 0.65 -0.7
701,369 + CA264_03030 0.65 -0.5
701,370 - CA264_03030 0.65 -0.4
701,370 - CA264_03030 0.65 -0.9
701,405 - CA264_03030 0.67 +0.5
701,408 + CA264_03030 0.67 -0.5
701,408 + CA264_03030 0.67 +0.4
701,478 - CA264_03030 0.70 -1.3
701,499 + CA264_03030 0.71 +0.2
701,558 + CA264_03030 0.74 +0.0
701,558 + CA264_03030 0.74 -1.1
701,559 - CA264_03030 0.74 -0.9
701,729 - CA264_03030 0.82 +0.1
701,744 + CA264_03030 0.82 +0.4
701,747 - CA264_03030 0.82 -0.4
701,758 + CA264_03030 0.83 -0.2
701,758 + CA264_03030 0.83 -0.0
701,760 + CA264_03030 0.83 +0.1
701,760 + CA264_03030 0.83 -0.8
701,787 - CA264_03030 0.84 -0.5
701,794 + CA264_03030 0.85 +1.0
701,819 + CA264_03030 0.86 -0.1
701,820 - CA264_03030 0.86 -0.0
701,840 - CA264_03030 0.87 +0.3
701,840 - CA264_03030 0.87 -0.3
701,883 - CA264_03030 0.89 -0.2
701,899 - CA264_03030 0.89 +2.6
702,015 - -0.8
702,068 + -0.9
702,070 + -0.5
702,071 - +0.5
702,189 + -0.7
702,189 + +0.4
702,195 + -0.1
702,196 - +0.6
702,198 - -1.0
702,198 - -0.2
702,204 - -0.8
702,213 + -0.2
702,214 - +0.5
702,217 + +0.6
702,241 - -0.3
702,431 + +0.5
702,439 - +0.0
702,450 + -0.3
702,451 - +1.3
702,451 - -0.0
702,463 - +1.1
702,463 - +0.0
702,489 + -0.8
702,490 - -0.4
702,571 + +0.3
702,571 + -0.0
702,572 - +0.5
702,572 - -0.4
702,656 + +1.0
702,656 + -0.5
702,728 - CA264_03035 0.11 -0.0
702,740 + CA264_03035 0.11 +0.0
702,740 + CA264_03035 0.11 +0.7
702,781 + CA264_03035 0.12 +0.2
702,781 + CA264_03035 0.12 +0.3
702,782 - CA264_03035 0.12 +0.4
702,782 - CA264_03035 0.12 -1.0
702,782 - CA264_03035 0.12 -0.1
702,782 - CA264_03035 0.12 -0.4
702,782 - CA264_03035 0.12 -1.7
702,782 - CA264_03035 0.12 +0.2
702,803 - CA264_03035 0.13 -0.8
702,880 - CA264_03035 0.15 -0.1
702,912 + CA264_03035 0.16 -0.8
702,922 - CA264_03035 0.16 +0.4
702,925 + CA264_03035 0.16 -0.5
702,926 - CA264_03035 0.17 -0.5
702,926 - CA264_03035 0.17 +0.0
702,926 - CA264_03035 0.17 +0.4
702,926 - CA264_03035 0.17 -0.3
703,091 + CA264_03035 0.21 -0.5
703,124 + CA264_03035 0.22 +0.5
703,140 + CA264_03035 0.23 +0.3
703,196 - CA264_03035 0.24 -0.1
703,196 - CA264_03035 0.24 -0.0
703,196 - CA264_03035 0.24 +0.2
703,196 - CA264_03035 0.24 +0.3
703,355 + CA264_03035 0.29 -0.0
703,374 + CA264_03035 0.29 +0.8
703,375 - CA264_03035 0.29 +0.1
703,420 + CA264_03035 0.30 +0.5
703,421 - CA264_03035 0.30 +0.3
703,421 - CA264_03035 0.30 -0.3
703,421 - CA264_03035 0.30 +0.3
703,423 + CA264_03035 0.31 -0.3
703,498 + CA264_03035 0.33 +0.4
703,498 + CA264_03035 0.33 +0.1
703,509 - CA264_03035 0.33 -0.2
703,547 - CA264_03035 0.34 -0.2
703,547 - CA264_03035 0.34 +0.2
703,559 - CA264_03035 0.34 -0.5
703,597 - CA264_03035 0.35 +0.1
703,825 + CA264_03035 0.42 +0.5
703,826 - CA264_03035 0.42 +1.0
703,966 + CA264_03035 0.46 +0.1
703,967 - CA264_03035 0.46 -0.5
703,967 - CA264_03035 0.46 +0.6
703,970 - CA264_03035 0.46 -1.3
703,970 - CA264_03035 0.46 +0.2
703,978 + CA264_03035 0.46 -0.3
704,008 + CA264_03035 0.47 +0.2
704,008 + CA264_03035 0.47 +0.4
704,009 - CA264_03035 0.47 +0.2
704,009 - CA264_03035 0.47 +0.3
704,128 + CA264_03035 0.50 -1.2
704,128 + CA264_03035 0.50 -0.3
704,128 + CA264_03035 0.50 -0.8
704,214 + CA264_03035 0.53 -0.0
704,214 + CA264_03035 0.53 +1.1
704,214 + CA264_03035 0.53 +0.1
704,309 + CA264_03035 0.56 -0.0
704,309 + CA264_03035 0.56 -0.2
704,309 + CA264_03035 0.56 -0.8
704,357 - CA264_03035 0.57 +0.3
704,410 + CA264_03035 0.58 +0.3
704,410 + CA264_03035 0.58 -1.6
704,411 - CA264_03035 0.58 -0.0
704,492 + CA264_03035 0.61 -0.1
704,493 - CA264_03035 0.61 +1.0
704,517 + CA264_03035 0.61 -0.8
704,517 + CA264_03035 0.61 -0.5
704,518 - CA264_03035 0.61 +0.7
704,522 - CA264_03035 0.62 -0.5
704,546 + CA264_03035 0.62 -0.0
704,723 + CA264_03035 0.67 -0.0
704,729 - CA264_03035 0.67 -0.1
704,729 - CA264_03035 0.67 +1.3
704,743 - CA264_03035 0.68 -0.3
704,776 - CA264_03035 0.69 -0.0
704,776 - CA264_03035 0.69 +1.4
704,810 - CA264_03035 0.70 +0.2
704,927 + CA264_03035 0.73 -0.3
704,927 + CA264_03035 0.73 -0.6
704,932 + CA264_03035 0.73 -0.9
704,933 - CA264_03035 0.73 +0.3
704,965 + CA264_03035 0.74 -0.4
704,967 + CA264_03035 0.74 -0.2
704,968 - CA264_03035 0.74 +0.3
704,972 - CA264_03035 0.74 -0.6
704,979 + CA264_03035 0.74 +0.6
704,980 - CA264_03035 0.74 -0.1
704,997 - CA264_03035 0.75 +0.4
705,054 + CA264_03035 0.77 +0.4
705,079 + CA264_03035 0.77 +0.8
705,079 + CA264_03035 0.77 -0.3
705,079 + CA264_03035 0.77 -0.1
705,080 - CA264_03035 0.77 +0.8
705,080 - CA264_03035 0.77 -0.9
705,080 - CA264_03035 0.77 -0.3
705,080 - CA264_03035 0.77 +0.9
705,166 - CA264_03035 0.80 +0.0
705,312 - CA264_03035 0.84 -0.4
705,331 + CA264_03035 0.84 -0.1
705,332 - CA264_03035 0.84 +0.4
705,332 - CA264_03035 0.84 -0.7
705,377 - CA264_03035 0.86 -0.7
705,377 - CA264_03035 0.86 -2.1
705,457 + CA264_03035 0.88 +0.3
705,457 + CA264_03035 0.88 +1.0
705,457 + CA264_03035 0.88 -2.1
705,508 - CA264_03035 0.89 +0.2
705,512 + CA264_03035 0.89 +0.5
705,512 + CA264_03035 0.89 -0.5
705,512 + CA264_03035 0.89 -0.7
705,513 - CA264_03035 0.89 -0.5
705,543 - -0.5
705,543 - -1.8
705,543 - -0.1
705,549 + +0.1
705,550 - +1.5
705,687 - -0.2
705,726 + -1.0
705,727 - -0.1
705,733 - +0.4
705,809 + -0.7
705,809 + -0.9
705,810 - -0.5
705,810 - -0.0
705,821 + +0.1
705,823 + -0.6
705,824 - +0.6
705,949 - -0.3
705,985 + -0.3
705,985 + -0.6
706,015 + -0.5
706,016 - -1.1
706,017 + -0.7
706,018 - -0.6
706,029 + -0.7
706,029 + -0.2
706,029 + +0.9
706,029 + +0.7
706,030 - +0.0
706,030 - -0.8
706,030 - -0.6
706,030 - +0.2
706,101 + -0.6
706,107 - +0.7
706,107 - +0.3
706,107 - +0.3
706,149 - -0.5
706,149 - -0.8
706,149 - -0.6
706,149 - -0.3
706,200 + +0.3
706,200 + -0.7
706,330 + CA264_03040 0.13 +0.8
706,377 - CA264_03040 0.14 -0.7
706,837 + CA264_03040 0.31 +1.3

Or see this region's nucleotide sequence