Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02305

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02295 and CA264_02300 overlap by 4 nucleotidesCA264_02300 and CA264_02305 overlap by 38 nucleotidesCA264_02305 and CA264_02310 are separated by 174 nucleotidesCA264_02310 and CA264_02315 are separated by 29 nucleotides CA264_02295: CA264_02295 - hypothetical protein, at 531,529 to 532,191 _02295 CA264_02300: CA264_02300 - hypothetical protein, at 532,188 to 533,063 _02300 CA264_02305: CA264_02305 - LuxR family transcriptional regulator, at 533,026 to 533,445 _02305 CA264_02310: CA264_02310 - hypothetical protein, at 533,620 to 534,171 _02310 CA264_02315: CA264_02315 - curli production assembly/transport component CsgF, at 534,201 to 534,629 _02315 Position (kb) 533 534Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 532.029 kb on + strand, within CA264_02295at 532.030 kb on - strand, within CA264_02295at 532.030 kb on - strand, within CA264_02295at 532.063 kb on - strand, within CA264_02295at 532.063 kb on - strand, within CA264_02295at 532.071 kb on + strand, within CA264_02295at 532.093 kb on + strand, within CA264_02295at 532.093 kb on + strand, within CA264_02295at 532.093 kb on + strand, within CA264_02295at 532.139 kb on + strandat 532.139 kb on + strandat 532.144 kb on + strandat 532.210 kb on + strandat 532.210 kb on + strandat 532.210 kb on + strandat 532.211 kb on - strandat 532.352 kb on + strand, within CA264_02300at 532.353 kb on - strand, within CA264_02300at 532.432 kb on + strand, within CA264_02300at 532.465 kb on + strand, within CA264_02300at 532.523 kb on - strand, within CA264_02300at 532.568 kb on - strand, within CA264_02300at 532.636 kb on + strand, within CA264_02300at 532.636 kb on + strand, within CA264_02300at 532.653 kb on + strand, within CA264_02300at 532.654 kb on - strand, within CA264_02300at 532.668 kb on - strand, within CA264_02300at 532.706 kb on + strand, within CA264_02300at 532.707 kb on - strand, within CA264_02300at 532.793 kb on - strand, within CA264_02300at 532.804 kb on - strand, within CA264_02300at 532.839 kb on - strand, within CA264_02300at 532.877 kb on + strand, within CA264_02300at 532.919 kb on + strand, within CA264_02300at 532.920 kb on - strand, within CA264_02300at 532.920 kb on - strand, within CA264_02300at 532.924 kb on + strand, within CA264_02300at 532.924 kb on + strand, within CA264_02300at 532.966 kb on + strand, within CA264_02300at 532.966 kb on + strand, within CA264_02300at 533.009 kb on + strandat 533.010 kb on - strandat 533.097 kb on - strand, within CA264_02305at 533.097 kb on - strand, within CA264_02305at 533.127 kb on - strand, within CA264_02305at 533.240 kb on - strand, within CA264_02305at 533.240 kb on - strand, within CA264_02305at 533.255 kb on - strand, within CA264_02305at 533.430 kb on - strandat 533.453 kb on - strandat 533.470 kb on - strandat 533.471 kb on + strandat 533.472 kb on - strandat 533.512 kb on - strandat 533.514 kb on - strandat 533.514 kb on - strandat 533.516 kb on - strandat 533.516 kb on - strandat 533.516 kb on - strandat 533.587 kb on - strandat 533.590 kb on + strandat 533.598 kb on + strandat 533.600 kb on + strandat 533.600 kb on + strandat 533.600 kb on + strandat 533.600 kb on + strandat 533.601 kb on - strandat 533.601 kb on - strandat 533.603 kb on + strandat 533.605 kb on + strandat 533.612 kb on - strandat 533.645 kb on + strandat 533.655 kb on + strandat 533.655 kb on + strandat 533.685 kb on + strand, within CA264_02310at 533.687 kb on + strand, within CA264_02310at 533.688 kb on - strand, within CA264_02310at 533.688 kb on - strand, within CA264_02310at 533.688 kb on - strand, within CA264_02310at 533.798 kb on - strand, within CA264_02310at 533.902 kb on + strand, within CA264_02310at 533.903 kb on - strand, within CA264_02310at 533.903 kb on - strand, within CA264_02310at 533.957 kb on + strand, within CA264_02310at 533.957 kb on + strand, within CA264_02310at 533.957 kb on + strand, within CA264_02310at 533.957 kb on + strand, within CA264_02310at 533.958 kb on - strand, within CA264_02310at 533.958 kb on - strand, within CA264_02310at 533.964 kb on + strand, within CA264_02310at 534.052 kb on + strand, within CA264_02310at 534.052 kb on + strand, within CA264_02310at 534.052 kb on + strand, within CA264_02310at 534.079 kb on + strand, within CA264_02310at 534.080 kb on - strand, within CA264_02310at 534.097 kb on + strand, within CA264_02310at 534.097 kb on + strand, within CA264_02310at 534.182 kb on + strandat 534.182 kb on + strandat 534.182 kb on + strandat 534.182 kb on + strandat 534.183 kb on - strandat 534.183 kb on - strandat 534.183 kb on - strandat 534.186 kb on + strandat 534.186 kb on + strandat 534.186 kb on + strandat 534.215 kb on + strandat 534.216 kb on - strandat 534.286 kb on - strand, within CA264_02315at 534.327 kb on + strand, within CA264_02315at 534.328 kb on - strand, within CA264_02315at 534.328 kb on - strand, within CA264_02315at 534.377 kb on + strand, within CA264_02315at 534.431 kb on + strand, within CA264_02315

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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532,029 + CA264_02295 0.75 -0.8
532,030 - CA264_02295 0.76 -0.2
532,030 - CA264_02295 0.76 +0.3
532,063 - CA264_02295 0.81 -0.4
532,063 - CA264_02295 0.81 +0.0
532,071 + CA264_02295 0.82 -0.0
532,093 + CA264_02295 0.85 -0.6
532,093 + CA264_02295 0.85 -0.1
532,093 + CA264_02295 0.85 +0.1
532,139 + +1.7
532,139 + +0.2
532,144 + +1.8
532,210 + +0.3
532,210 + -1.1
532,210 + +0.8
532,211 - -0.8
532,352 + CA264_02300 0.19 -0.3
532,353 - CA264_02300 0.19 +0.2
532,432 + CA264_02300 0.28 +0.1
532,465 + CA264_02300 0.32 -0.1
532,523 - CA264_02300 0.38 -1.1
532,568 - CA264_02300 0.43 -0.2
532,636 + CA264_02300 0.51 -0.5
532,636 + CA264_02300 0.51 -0.4
532,653 + CA264_02300 0.53 +0.4
532,654 - CA264_02300 0.53 +0.0
532,668 - CA264_02300 0.55 -0.4
532,706 + CA264_02300 0.59 -0.1
532,707 - CA264_02300 0.59 -0.2
532,793 - CA264_02300 0.69 -0.4
532,804 - CA264_02300 0.70 -0.5
532,839 - CA264_02300 0.74 +0.8
532,877 + CA264_02300 0.79 -1.7
532,919 + CA264_02300 0.83 -0.2
532,920 - CA264_02300 0.84 -0.0
532,920 - CA264_02300 0.84 -0.1
532,924 + CA264_02300 0.84 +0.9
532,924 + CA264_02300 0.84 -0.2
532,966 + CA264_02300 0.89 -0.1
532,966 + CA264_02300 0.89 -0.2
533,009 + +0.7
533,010 - +0.3
533,097 - CA264_02305 0.17 +0.0
533,097 - CA264_02305 0.17 -1.1
533,127 - CA264_02305 0.24 -0.5
533,240 - CA264_02305 0.51 +0.9
533,240 - CA264_02305 0.51 +0.9
533,255 - CA264_02305 0.55 -0.4
533,430 - +0.1
533,453 - -0.7
533,470 - +1.2
533,471 + +0.0
533,472 - +0.1
533,512 - -1.3
533,514 - +0.4
533,514 - -0.0
533,516 - +0.5
533,516 - -3.3
533,516 - +0.7
533,587 - +0.1
533,590 + -0.4
533,598 + -0.4
533,600 + -0.8
533,600 + -0.2
533,600 + -0.1
533,600 + +1.0
533,601 - -0.6
533,601 - +0.2
533,603 + +0.1
533,605 + +0.6
533,612 - +0.4
533,645 + -0.5
533,655 + -0.1
533,655 + -1.2
533,685 + CA264_02310 0.12 +0.7
533,687 + CA264_02310 0.12 -0.3
533,688 - CA264_02310 0.12 +0.9
533,688 - CA264_02310 0.12 -0.3
533,688 - CA264_02310 0.12 -0.4
533,798 - CA264_02310 0.32 -0.1
533,902 + CA264_02310 0.51 -0.4
533,903 - CA264_02310 0.51 +0.2
533,903 - CA264_02310 0.51 -0.5
533,957 + CA264_02310 0.61 -0.2
533,957 + CA264_02310 0.61 +0.9
533,957 + CA264_02310 0.61 +1.0
533,957 + CA264_02310 0.61 -0.3
533,958 - CA264_02310 0.61 -0.9
533,958 - CA264_02310 0.61 +0.1
533,964 + CA264_02310 0.62 +0.1
534,052 + CA264_02310 0.78 -0.1
534,052 + CA264_02310 0.78 +0.2
534,052 + CA264_02310 0.78 -0.0
534,079 + CA264_02310 0.83 -0.4
534,080 - CA264_02310 0.83 -0.3
534,097 + CA264_02310 0.86 -0.1
534,097 + CA264_02310 0.86 -1.1
534,182 + -0.5
534,182 + -0.2
534,182 + +0.1
534,182 + +1.1
534,183 - +0.5
534,183 - +1.1
534,183 - -0.4
534,186 + +1.4
534,186 + -0.4
534,186 + -0.2
534,215 + -1.5
534,216 - +0.6
534,286 - CA264_02315 0.20 +0.1
534,327 + CA264_02315 0.29 +0.4
534,328 - CA264_02315 0.30 +0.1
534,328 - CA264_02315 0.30 +0.2
534,377 + CA264_02315 0.41 -0.1
534,431 + CA264_02315 0.54 -1.3

Or see this region's nucleotide sequence