Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00100 and CA264_00105 are separated by 612 nucleotides CA264_00105 and CA264_00110 overlap by 1 nucleotides CA264_00110 and CA264_00115 are separated by 164 nucleotides
CA264_00100: CA264_00100 - acetate--CoA ligase, at 25,800 to 29,657
_00100
CA264_00105: CA264_00105 - nucleotidyltransferase, at 30,270 to 32,201
_00105
CA264_00110: CA264_00110 - DNA polymerase III subunit epsilon, at 32,201 to 32,899
_00110
CA264_00115: CA264_00115 - hypothetical protein, at 33,064 to 33,564
_00115
Position (kb) 30
31
32
33 Strain fitness (log2 ratio) -2
-1
0
1
2 at 29.272 kb on + strand at 29.273 kb on - strand at 29.512 kb on + strand at 29.627 kb on - strand at 29.665 kb on + strand at 29.678 kb on + strand at 29.759 kb on + strand at 29.759 kb on + strand at 29.760 kb on - strand at 29.760 kb on - strand at 29.786 kb on + strand at 29.790 kb on + strand at 29.890 kb on + strand at 29.903 kb on - strand at 29.928 kb on - strand at 29.930 kb on + strand at 29.930 kb on + strand at 29.931 kb on - strand at 29.931 kb on - strand at 29.977 kb on + strand at 30.051 kb on + strand at 30.052 kb on - strand at 30.052 kb on - strand at 30.059 kb on + strand at 30.060 kb on - strand at 30.061 kb on + strand at 30.062 kb on - strand at 30.109 kb on + strand at 30.152 kb on + strand at 30.152 kb on + strand at 30.153 kb on - strand at 30.247 kb on + strand at 30.247 kb on + strand at 30.247 kb on + strand at 30.247 kb on + strand at 30.249 kb on + strand at 30.252 kb on + strand at 30.269 kb on + strand at 30.289 kb on + strand at 30.332 kb on + strand at 30.413 kb on + strand at 30.444 kb on + strand at 30.444 kb on + strand at 30.445 kb on - strand at 30.445 kb on - strand at 30.445 kb on - strand at 30.511 kb on + strand, within CA264_00105 at 30.511 kb on + strand, within CA264_00105 at 30.511 kb on + strand, within CA264_00105 at 30.512 kb on - strand, within CA264_00105 at 30.514 kb on - strand, within CA264_00105 at 30.554 kb on + strand, within CA264_00105 at 30.603 kb on + strand, within CA264_00105 at 30.632 kb on + strand, within CA264_00105 at 30.710 kb on + strand, within CA264_00105 at 30.814 kb on + strand, within CA264_00105 at 30.881 kb on + strand, within CA264_00105 at 30.882 kb on - strand, within CA264_00105 at 31.015 kb on + strand, within CA264_00105 at 31.015 kb on + strand, within CA264_00105 at 31.015 kb on + strand, within CA264_00105 at 31.016 kb on - strand, within CA264_00105 at 31.016 kb on - strand, within CA264_00105 at 31.067 kb on + strand, within CA264_00105 at 31.295 kb on + strand, within CA264_00105 at 31.295 kb on + strand, within CA264_00105 at 31.295 kb on + strand, within CA264_00105 at 31.295 kb on + strand, within CA264_00105 at 31.296 kb on - strand, within CA264_00105 at 31.298 kb on - strand, within CA264_00105 at 31.352 kb on - strand, within CA264_00105 at 31.517 kb on - strand, within CA264_00105 at 31.575 kb on - strand, within CA264_00105 at 31.615 kb on - strand, within CA264_00105 at 31.630 kb on + strand, within CA264_00105 at 31.668 kb on - strand, within CA264_00105 at 31.728 kb on + strand, within CA264_00105 at 31.728 kb on + strand, within CA264_00105 at 31.729 kb on - strand, within CA264_00105 at 31.744 kb on + strand, within CA264_00105 at 31.744 kb on + strand, within CA264_00105 at 31.745 kb on - strand, within CA264_00105 at 31.759 kb on + strand, within CA264_00105 at 31.826 kb on + strand, within CA264_00105 at 31.826 kb on + strand, within CA264_00105 at 31.867 kb on + strand, within CA264_00105 at 31.868 kb on - strand, within CA264_00105 at 31.868 kb on - strand, within CA264_00105 at 31.868 kb on - strand, within CA264_00105 at 31.894 kb on + strand, within CA264_00105 at 31.953 kb on - strand, within CA264_00105 at 32.022 kb on + strand at 32.083 kb on - strand at 32.133 kb on - strand at 32.138 kb on + strand at 32.276 kb on + strand, within CA264_00110 at 32.276 kb on + strand, within CA264_00110 at 32.277 kb on - strand, within CA264_00110 at 32.289 kb on + strand, within CA264_00110 at 32.289 kb on + strand, within CA264_00110 at 32.289 kb on + strand, within CA264_00110 at 32.289 kb on + strand, within CA264_00110 at 32.290 kb on - strand, within CA264_00110 at 32.290 kb on - strand, within CA264_00110 at 32.290 kb on - strand, within CA264_00110 at 32.293 kb on + strand, within CA264_00110 at 32.293 kb on + strand, within CA264_00110 at 32.293 kb on + strand, within CA264_00110 at 32.294 kb on - strand, within CA264_00110 at 32.312 kb on - strand, within CA264_00110 at 32.312 kb on - strand, within CA264_00110 at 32.370 kb on + strand, within CA264_00110 at 32.370 kb on + strand, within CA264_00110 at 32.370 kb on + strand, within CA264_00110 at 32.414 kb on - strand, within CA264_00110 at 32.414 kb on - strand, within CA264_00110 at 32.414 kb on - strand, within CA264_00110 at 32.414 kb on - strand, within CA264_00110 at 32.437 kb on + strand, within CA264_00110 at 32.517 kb on + strand, within CA264_00110 at 32.518 kb on - strand, within CA264_00110 at 32.673 kb on + strand, within CA264_00110 at 32.744 kb on + strand, within CA264_00110 at 32.752 kb on - strand, within CA264_00110 at 32.771 kb on + strand, within CA264_00110 at 32.772 kb on - strand, within CA264_00110 at 32.772 kb on - strand, within CA264_00110 at 32.774 kb on - strand, within CA264_00110 at 32.829 kb on + strand, within CA264_00110 at 32.872 kb on + strand at 32.929 kb on + strand at 32.951 kb on + strand at 32.955 kb on + strand at 32.974 kb on - strand at 32.982 kb on + strand at 32.985 kb on - strand at 33.028 kb on + strand at 33.029 kb on - strand at 33.029 kb on - strand at 33.033 kb on - strand at 33.108 kb on + strand at 33.109 kb on - strand at 33.162 kb on - strand, within CA264_00115
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 29,272 + -0.2 29,273 - +0.1 29,512 + -0.3 29,627 - -0.1 29,665 + -0.2 29,678 + +0.9 29,759 + -0.1 29,759 + -0.3 29,760 - -1.6 29,760 - +0.3 29,786 + -0.9 29,790 + +1.2 29,890 + +0.6 29,903 - +0.7 29,928 - -0.5 29,930 + -0.6 29,930 + -0.0 29,931 - -0.9 29,931 - -0.0 29,977 + +1.2 30,051 + -0.4 30,052 - +0.1 30,052 - +0.7 30,059 + -0.3 30,060 - -1.6 30,061 + -0.3 30,062 - -0.3 30,109 + +0.8 30,152 + -1.8 30,152 + -1.3 30,153 - +0.0 30,247 + -1.7 30,247 + -0.1 30,247 + -1.5 30,247 + +0.3 30,249 + -0.3 30,252 + +0.3 30,269 + -0.1 30,289 + +0.1 30,332 + -0.4 30,413 + -0.2 30,444 + -0.1 30,444 + +1.3 30,445 - -0.1 30,445 - +0.3 30,445 - +1.3 30,511 + CA264_00105 0.12 -0.1 30,511 + CA264_00105 0.12 -0.4 30,511 + CA264_00105 0.12 +0.4 30,512 - CA264_00105 0.13 -0.4 30,514 - CA264_00105 0.13 +0.4 30,554 + CA264_00105 0.15 +1.9 30,603 + CA264_00105 0.17 -0.5 30,632 + CA264_00105 0.19 +0.2 30,710 + CA264_00105 0.23 -0.5 30,814 + CA264_00105 0.28 +1.0 30,881 + CA264_00105 0.32 -0.1 30,882 - CA264_00105 0.32 +0.1 31,015 + CA264_00105 0.39 +1.1 31,015 + CA264_00105 0.39 +0.3 31,015 + CA264_00105 0.39 +1.1 31,016 - CA264_00105 0.39 +0.1 31,016 - CA264_00105 0.39 -0.4 31,067 + CA264_00105 0.41 +1.4 31,295 + CA264_00105 0.53 -0.3 31,295 + CA264_00105 0.53 -0.2 31,295 + CA264_00105 0.53 +0.2 31,295 + CA264_00105 0.53 +0.7 31,296 - CA264_00105 0.53 -0.2 31,298 - CA264_00105 0.53 -0.1 31,352 - CA264_00105 0.56 -1.2 31,517 - CA264_00105 0.65 -0.7 31,575 - CA264_00105 0.68 -0.2 31,615 - CA264_00105 0.70 +0.6 31,630 + CA264_00105 0.70 -0.9 31,668 - CA264_00105 0.72 -0.3 31,728 + CA264_00105 0.75 +0.5 31,728 + CA264_00105 0.75 -0.9 31,729 - CA264_00105 0.76 -0.7 31,744 + CA264_00105 0.76 -0.8 31,744 + CA264_00105 0.76 +1.6 31,745 - CA264_00105 0.76 -0.8 31,759 + CA264_00105 0.77 +0.9 31,826 + CA264_00105 0.81 +0.2 31,826 + CA264_00105 0.81 -0.9 31,867 + CA264_00105 0.83 -0.4 31,868 - CA264_00105 0.83 -0.2 31,868 - CA264_00105 0.83 -1.1 31,868 - CA264_00105 0.83 +0.1 31,894 + CA264_00105 0.84 +0.8 31,953 - CA264_00105 0.87 +0.2 32,022 + -0.1 32,083 - -0.5 32,133 - -0.1 32,138 + -0.8 32,276 + CA264_00110 0.11 -0.6 32,276 + CA264_00110 0.11 +0.6 32,277 - CA264_00110 0.11 -1.3 32,289 + CA264_00110 0.13 -0.5 32,289 + CA264_00110 0.13 -0.3 32,289 + CA264_00110 0.13 -1.1 32,289 + CA264_00110 0.13 -0.9 32,290 - CA264_00110 0.13 -0.8 32,290 - CA264_00110 0.13 -0.5 32,290 - CA264_00110 0.13 -0.2 32,293 + CA264_00110 0.13 -1.1 32,293 + CA264_00110 0.13 +0.0 32,293 + CA264_00110 0.13 -0.8 32,294 - CA264_00110 0.13 -0.7 32,312 - CA264_00110 0.16 +0.2 32,312 - CA264_00110 0.16 -0.9 32,370 + CA264_00110 0.24 -0.3 32,370 + CA264_00110 0.24 -0.3 32,370 + CA264_00110 0.24 -0.3 32,414 - CA264_00110 0.30 +0.7 32,414 - CA264_00110 0.30 -0.2 32,414 - CA264_00110 0.30 -1.4 32,414 - CA264_00110 0.30 +0.1 32,437 + CA264_00110 0.34 -0.0 32,517 + CA264_00110 0.45 -0.1 32,518 - CA264_00110 0.45 +0.3 32,673 + CA264_00110 0.68 +0.0 32,744 + CA264_00110 0.78 -0.4 32,752 - CA264_00110 0.79 +0.3 32,771 + CA264_00110 0.82 +0.7 32,772 - CA264_00110 0.82 -0.3 32,772 - CA264_00110 0.82 +0.3 32,774 - CA264_00110 0.82 -0.8 32,829 + CA264_00110 0.90 -0.8 32,872 + +0.7 32,929 + -0.2 32,951 + -0.2 32,955 + -0.6 32,974 - +0.5 32,982 + +0.6 32,985 - -1.5 33,028 + -0.0 33,029 - +0.3 33,029 - -0.1 33,033 - +0.5 33,108 + +1.5 33,109 - -0.2 33,162 - CA264_00115 0.20 +0.6
Or see this region's nucleotide sequence