Strain Fitness in Agrobacterium fabrum C58 around Atu6139

Experiment: Hydantoin (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6138 and Atu6139 are separated by 57 nucleotidesAtu6139 and Atu6140 are separated by 99 nucleotidesAtu6140 and Atu6141 overlap by 4 nucleotides Atu6138: Atu6138 - Repressor of the acc and arc operons, at 157,464 to 158,240 Atu6138 Atu6139: Atu6139 - ABC transporter, substrate binding protein (agrocinopines A and B), at 158,298 to 159,863 Atu6139 Atu6140: Atu6140 - ABC transporter, nucleotide binding/ATPase protein (agrocinopine), at 159,963 to 160,862 Atu6140 Atu6141: Atu6141 - ABC transporter, nucleotide binding/ATPase protein (agrocinopine), at 160,859 to 161,878 Atu6141 Position (kb) 158 159 160Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 157.475 kb on - strandat 157.482 kb on - strandat 157.487 kb on - strandat 157.614 kb on + strand, within Atu6138at 157.655 kb on + strand, within Atu6138at 157.655 kb on + strand, within Atu6138at 157.669 kb on + strand, within Atu6138at 157.672 kb on - strand, within Atu6138at 157.672 kb on - strand, within Atu6138at 157.826 kb on - strand, within Atu6138at 157.839 kb on + strand, within Atu6138at 157.848 kb on - strand, within Atu6138at 157.897 kb on + strand, within Atu6138at 157.909 kb on - strand, within Atu6138at 157.917 kb on + strand, within Atu6138at 157.944 kb on - strand, within Atu6138at 157.977 kb on + strand, within Atu6138at 158.021 kb on - strand, within Atu6138at 158.049 kb on + strand, within Atu6138at 158.070 kb on + strand, within Atu6138at 158.274 kb on + strandat 158.279 kb on - strandat 158.409 kb on + strandat 158.431 kb on + strandat 158.441 kb on + strandat 158.441 kb on + strandat 158.453 kb on + strandat 158.529 kb on - strand, within Atu6139at 158.534 kb on - strand, within Atu6139at 158.551 kb on + strand, within Atu6139at 158.551 kb on + strand, within Atu6139at 158.557 kb on - strand, within Atu6139at 158.577 kb on - strand, within Atu6139at 158.599 kb on + strand, within Atu6139at 158.635 kb on + strand, within Atu6139at 158.635 kb on + strand, within Atu6139at 158.643 kb on - strand, within Atu6139at 158.643 kb on - strand, within Atu6139at 158.643 kb on - strand, within Atu6139at 158.643 kb on - strand, within Atu6139at 158.661 kb on + strand, within Atu6139at 158.666 kb on + strand, within Atu6139at 158.666 kb on - strand, within Atu6139at 158.683 kb on + strand, within Atu6139at 158.684 kb on + strand, within Atu6139at 158.684 kb on + strand, within Atu6139at 158.684 kb on + strand, within Atu6139at 158.692 kb on - strand, within Atu6139at 158.692 kb on - strand, within Atu6139at 158.771 kb on - strand, within Atu6139at 158.775 kb on + strand, within Atu6139at 158.815 kb on - strand, within Atu6139at 158.861 kb on - strand, within Atu6139at 158.944 kb on + strand, within Atu6139at 158.977 kb on + strand, within Atu6139at 158.992 kb on + strand, within Atu6139at 159.012 kb on - strand, within Atu6139at 159.055 kb on - strand, within Atu6139at 159.055 kb on - strand, within Atu6139at 159.070 kb on + strand, within Atu6139at 159.078 kb on - strand, within Atu6139at 159.084 kb on - strand, within Atu6139at 159.163 kb on + strand, within Atu6139at 159.211 kb on + strand, within Atu6139at 159.211 kb on + strand, within Atu6139at 159.219 kb on - strand, within Atu6139at 159.252 kb on + strand, within Atu6139at 159.268 kb on + strand, within Atu6139at 159.268 kb on + strand, within Atu6139at 159.331 kb on - strand, within Atu6139at 159.331 kb on - strand, within Atu6139at 159.331 kb on - strand, within Atu6139at 159.331 kb on - strand, within Atu6139at 159.353 kb on + strand, within Atu6139at 159.366 kb on + strand, within Atu6139at 159.499 kb on - strand, within Atu6139at 159.578 kb on - strand, within Atu6139at 159.583 kb on + strand, within Atu6139at 159.618 kb on + strand, within Atu6139at 159.645 kb on - strand, within Atu6139at 159.682 kb on - strand, within Atu6139at 159.682 kb on - strand, within Atu6139at 159.779 kb on + strandat 159.787 kb on - strandat 159.787 kb on - strandat 159.814 kb on - strandat 159.906 kb on + strandat 159.907 kb on + strandat 159.907 kb on + strandat 159.914 kb on - strandat 159.915 kb on - strandat 159.976 kb on + strandat 159.994 kb on - strandat 160.024 kb on + strandat 160.025 kb on + strandat 160.025 kb on - strandat 160.025 kb on - strandat 160.032 kb on - strandat 160.079 kb on + strand, within Atu6140at 160.125 kb on + strand, within Atu6140at 160.128 kb on - strand, within Atu6140at 160.135 kb on - strand, within Atu6140at 160.137 kb on + strand, within Atu6140at 160.189 kb on - strand, within Atu6140at 160.195 kb on + strand, within Atu6140at 160.195 kb on + strand, within Atu6140at 160.203 kb on - strand, within Atu6140at 160.203 kb on - strand, within Atu6140at 160.203 kb on - strand, within Atu6140at 160.235 kb on - strand, within Atu6140at 160.267 kb on + strand, within Atu6140at 160.277 kb on + strand, within Atu6140at 160.285 kb on - strand, within Atu6140at 160.285 kb on - strand, within Atu6140at 160.295 kb on + strand, within Atu6140at 160.342 kb on + strand, within Atu6140at 160.360 kb on - strand, within Atu6140at 160.430 kb on + strand, within Atu6140at 160.438 kb on - strand, within Atu6140at 160.438 kb on - strand, within Atu6140at 160.503 kb on + strand, within Atu6140at 160.531 kb on + strand, within Atu6140at 160.531 kb on + strand, within Atu6140at 160.624 kb on + strand, within Atu6140at 160.634 kb on + strand, within Atu6140at 160.642 kb on - strand, within Atu6140at 160.684 kb on + strand, within Atu6140at 160.692 kb on - strand, within Atu6140at 160.692 kb on - strand, within Atu6140at 160.692 kb on - strand, within Atu6140at 160.716 kb on + strand, within Atu6140at 160.716 kb on + strand, within Atu6140at 160.761 kb on + strand, within Atu6140at 160.773 kb on - strandat 160.773 kb on - strandat 160.817 kb on - strandat 160.840 kb on + strandat 160.848 kb on - strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.855 kb on + strandat 160.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydantoin (N)
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157,475 - +1.1
157,482 - +0.5
157,487 - +2.2
157,614 + Atu6138 0.19 +1.1
157,655 + Atu6138 0.25 +1.1
157,655 + Atu6138 0.25 -1.1
157,669 + Atu6138 0.26 +1.3
157,672 - Atu6138 0.27 +1.9
157,672 - Atu6138 0.27 +0.6
157,826 - Atu6138 0.47 +2.9
157,839 + Atu6138 0.48 +1.0
157,848 - Atu6138 0.49 +3.4
157,897 + Atu6138 0.56 +3.7
157,909 - Atu6138 0.57 +2.8
157,917 + Atu6138 0.58 +4.1
157,944 - Atu6138 0.62 +3.9
157,977 + Atu6138 0.66 +1.4
158,021 - Atu6138 0.72 +2.9
158,049 + Atu6138 0.75 -0.2
158,070 + Atu6138 0.78 -0.1
158,274 + +0.5
158,279 - -0.2
158,409 + +1.6
158,431 + +0.9
158,441 + +1.9
158,441 + +1.3
158,453 + -0.3
158,529 - Atu6139 0.15 +1.0
158,534 - Atu6139 0.15 +1.6
158,551 + Atu6139 0.16 -1.1
158,551 + Atu6139 0.16 -1.1
158,557 - Atu6139 0.17 +0.9
158,577 - Atu6139 0.18 -0.9
158,599 + Atu6139 0.19 +0.4
158,635 + Atu6139 0.22 -0.5
158,635 + Atu6139 0.22 +0.2
158,643 - Atu6139 0.22 +0.4
158,643 - Atu6139 0.22 +0.2
158,643 - Atu6139 0.22 -1.0
158,643 - Atu6139 0.22 -0.9
158,661 + Atu6139 0.23 +0.3
158,666 + Atu6139 0.23 -0.4
158,666 - Atu6139 0.23 +1.6
158,683 + Atu6139 0.25 +0.4
158,684 + Atu6139 0.25 +1.4
158,684 + Atu6139 0.25 -0.5
158,684 + Atu6139 0.25 +1.1
158,692 - Atu6139 0.25 +0.4
158,692 - Atu6139 0.25 -0.5
158,771 - Atu6139 0.30 +2.4
158,775 + Atu6139 0.30 -0.7
158,815 - Atu6139 0.33 +1.1
158,861 - Atu6139 0.36 -0.2
158,944 + Atu6139 0.41 +1.2
158,977 + Atu6139 0.43 +0.9
158,992 + Atu6139 0.44 +0.5
159,012 - Atu6139 0.46 -0.3
159,055 - Atu6139 0.48 +0.5
159,055 - Atu6139 0.48 +1.9
159,070 + Atu6139 0.49 +1.3
159,078 - Atu6139 0.50 +0.4
159,084 - Atu6139 0.50 +0.1
159,163 + Atu6139 0.55 +0.4
159,211 + Atu6139 0.58 +3.9
159,211 + Atu6139 0.58 +0.8
159,219 - Atu6139 0.59 +0.5
159,252 + Atu6139 0.61 -0.6
159,268 + Atu6139 0.62 +0.5
159,268 + Atu6139 0.62 +0.5
159,331 - Atu6139 0.66 +0.1
159,331 - Atu6139 0.66 -2.2
159,331 - Atu6139 0.66 +0.9
159,331 - Atu6139 0.66 +0.2
159,353 + Atu6139 0.67 +2.4
159,366 + Atu6139 0.68 +0.3
159,499 - Atu6139 0.77 -1.2
159,578 - Atu6139 0.82 +0.8
159,583 + Atu6139 0.82 +0.0
159,618 + Atu6139 0.84 +1.4
159,645 - Atu6139 0.86 +4.4
159,682 - Atu6139 0.88 +0.5
159,682 - Atu6139 0.88 -0.0
159,779 + -0.6
159,787 - +0.5
159,787 - -0.1
159,814 - -0.1
159,906 + -0.0
159,907 + +0.4
159,907 + +0.1
159,914 - +0.9
159,915 - -0.2
159,976 + +4.4
159,994 - -1.9
160,024 + +2.4
160,025 + +0.4
160,025 - -0.6
160,025 - +1.4
160,032 - +0.4
160,079 + Atu6140 0.13 -0.1
160,125 + Atu6140 0.18 -1.5
160,128 - Atu6140 0.18 +1.0
160,135 - Atu6140 0.19 +0.5
160,137 + Atu6140 0.19 -0.1
160,189 - Atu6140 0.25 +0.2
160,195 + Atu6140 0.26 +0.8
160,195 + Atu6140 0.26 +0.5
160,203 - Atu6140 0.27 +0.7
160,203 - Atu6140 0.27 +0.6
160,203 - Atu6140 0.27 +0.6
160,235 - Atu6140 0.30 +0.1
160,267 + Atu6140 0.34 +2.4
160,277 + Atu6140 0.35 +1.7
160,285 - Atu6140 0.36 +0.4
160,285 - Atu6140 0.36 -0.1
160,295 + Atu6140 0.37 +0.7
160,342 + Atu6140 0.42 -0.3
160,360 - Atu6140 0.44 +2.9
160,430 + Atu6140 0.52 -0.4
160,438 - Atu6140 0.53 +1.4
160,438 - Atu6140 0.53 +0.2
160,503 + Atu6140 0.60 -1.1
160,531 + Atu6140 0.63 +1.7
160,531 + Atu6140 0.63 +0.9
160,624 + Atu6140 0.73 -0.6
160,634 + Atu6140 0.75 +0.5
160,642 - Atu6140 0.75 -1.2
160,684 + Atu6140 0.80 -0.2
160,692 - Atu6140 0.81 -0.5
160,692 - Atu6140 0.81 +1.4
160,692 - Atu6140 0.81 +0.8
160,716 + Atu6140 0.84 +0.7
160,716 + Atu6140 0.84 +1.7
160,761 + Atu6140 0.89 -0.2
160,773 - +1.4
160,773 - +0.4
160,817 - +0.8
160,840 + +1.3
160,848 - +0.4
160,855 + +2.9
160,855 + +0.5
160,855 + +1.4
160,855 + +1.3
160,855 + -0.0
160,855 + +1.3
160,863 - -0.2

Or see this region's nucleotide sequence