Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4242 and Echvi_4243 are separated by 359 nucleotides Echvi_4243 and Echvi_4244 are separated by 434 nucleotides
Echvi_4242: Echvi_4242 - DNA repair proteins, at 5,087,108 to 5,087,572
_4242
Echvi_4243: Echvi_4243 - FOG: Transposase and inactivated derivatives, at 5,087,932 to 5,089,087
_4243
Echvi_4244: Echvi_4244 - hypothetical protein, at 5,089,522 to 5,089,854
_4244
Position (kb)
5087
5088
5089
5090 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5086.963 kb on - strand at 5086.985 kb on + strand at 5086.986 kb on - strand at 5086.986 kb on - strand at 5087.001 kb on - strand at 5087.028 kb on - strand at 5087.032 kb on + strand at 5087.062 kb on + strand at 5087.091 kb on - strand at 5087.096 kb on - strand at 5087.140 kb on - strand at 5087.157 kb on - strand, within Echvi_4242 at 5087.162 kb on - strand, within Echvi_4242 at 5087.526 kb on - strand at 5087.587 kb on - strand at 5087.587 kb on - strand at 5087.662 kb on + strand at 5087.662 kb on + strand at 5087.663 kb on - strand at 5087.663 kb on - strand at 5087.762 kb on + strand at 5087.763 kb on - strand at 5087.826 kb on + strand at 5087.826 kb on + strand at 5087.827 kb on - strand at 5087.827 kb on - strand at 5087.827 kb on - strand at 5087.827 kb on - strand at 5087.832 kb on - strand at 5087.832 kb on - strand at 5087.832 kb on - strand at 5087.834 kb on - strand at 5087.834 kb on - strand at 5087.839 kb on - strand at 5087.855 kb on + strand at 5087.857 kb on + strand at 5087.894 kb on - strand at 5087.930 kb on + strand at 5087.931 kb on - strand at 5087.931 kb on - strand at 5087.931 kb on - strand at 5087.965 kb on + strand at 5087.966 kb on - strand at 5087.994 kb on + strand at 5087.994 kb on + strand at 5088.038 kb on - strand at 5088.039 kb on + strand at 5088.040 kb on - strand at 5088.040 kb on - strand at 5088.139 kb on + strand, within Echvi_4243 at 5088.140 kb on - strand, within Echvi_4243 at 5088.151 kb on + strand, within Echvi_4243 at 5088.193 kb on + strand, within Echvi_4243 at 5088.193 kb on + strand, within Echvi_4243 at 5088.194 kb on - strand, within Echvi_4243 at 5088.194 kb on - strand, within Echvi_4243 at 5088.242 kb on + strand, within Echvi_4243 at 5088.351 kb on - strand, within Echvi_4243 at 5088.351 kb on - strand, within Echvi_4243 at 5088.528 kb on + strand, within Echvi_4243 at 5088.529 kb on - strand, within Echvi_4243 at 5088.577 kb on - strand, within Echvi_4243 at 5088.577 kb on - strand, within Echvi_4243 at 5088.586 kb on + strand, within Echvi_4243 at 5088.589 kb on + strand, within Echvi_4243 at 5088.643 kb on - strand, within Echvi_4243 at 5088.665 kb on + strand, within Echvi_4243 at 5088.665 kb on + strand, within Echvi_4243 at 5088.665 kb on + strand, within Echvi_4243 at 5088.665 kb on + strand, within Echvi_4243 at 5088.665 kb on + strand, within Echvi_4243 at 5088.666 kb on - strand, within Echvi_4243 at 5088.666 kb on - strand, within Echvi_4243 at 5088.819 kb on + strand, within Echvi_4243 at 5088.869 kb on - strand, within Echvi_4243 at 5088.895 kb on + strand, within Echvi_4243 at 5088.907 kb on + strand, within Echvi_4243 at 5089.085 kb on - strand at 5089.098 kb on + strand at 5089.102 kb on + strand at 5089.105 kb on + strand at 5089.197 kb on + strand at 5089.197 kb on + strand at 5089.255 kb on - strand at 5089.487 kb on + strand at 5089.508 kb on + strand at 5089.509 kb on - strand at 5089.509 kb on - strand at 5089.509 kb on - strand at 5089.509 kb on - strand at 5089.580 kb on - strand, within Echvi_4244 at 5089.595 kb on + strand, within Echvi_4244 at 5089.596 kb on - strand, within Echvi_4244 at 5089.596 kb on - strand, within Echvi_4244 at 5089.648 kb on - strand, within Echvi_4244 at 5089.654 kb on + strand, within Echvi_4244 at 5089.688 kb on + strand, within Echvi_4244 at 5089.689 kb on - strand, within Echvi_4244 at 5089.706 kb on + strand, within Echvi_4244 at 5089.706 kb on + strand, within Echvi_4244 at 5089.723 kb on + strand, within Echvi_4244 at 5089.724 kb on - strand, within Echvi_4244 at 5089.724 kb on - strand, within Echvi_4244 at 5089.757 kb on + strand, within Echvi_4244 at 5089.764 kb on + strand, within Echvi_4244 at 5089.863 kb on + strand at 5089.864 kb on - strand at 5089.881 kb on + strand at 5089.882 kb on - strand at 5089.884 kb on - strand at 5089.980 kb on - strand at 5090.024 kb on + strand at 5090.024 kb on + strand at 5090.063 kb on + strand at 5090.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 5,086,963 - -0.5 5,086,985 + -1.3 5,086,986 - -0.2 5,086,986 - +0.4 5,087,001 - -1.2 5,087,028 - -2.9 5,087,032 + -0.6 5,087,062 + +0.2 5,087,091 - -0.6 5,087,096 - -1.7 5,087,140 - -2.3 5,087,157 - Echvi_4242 0.11 +0.3 5,087,162 - Echvi_4242 0.12 +1.1 5,087,526 - -0.8 5,087,587 - -0.7 5,087,587 - -1.2 5,087,662 + +1.1 5,087,662 + -1.2 5,087,663 - -0.3 5,087,663 - -1.3 5,087,762 + -0.6 5,087,763 - -1.2 5,087,826 + -0.4 5,087,826 + +0.0 5,087,827 - -1.0 5,087,827 - -0.9 5,087,827 - -0.2 5,087,827 - -0.4 5,087,832 - -0.3 5,087,832 - -0.4 5,087,832 - -0.3 5,087,834 - +0.7 5,087,834 - -1.3 5,087,839 - -0.2 5,087,855 + -0.3 5,087,857 + -0.3 5,087,894 - -1.4 5,087,930 + -2.2 5,087,931 - +0.1 5,087,931 - +0.6 5,087,931 - +0.6 5,087,965 + -0.9 5,087,966 - -1.2 5,087,994 + -1.0 5,087,994 + +1.0 5,088,038 - +1.6 5,088,039 + +0.4 5,088,040 - +0.8 5,088,040 - +1.0 5,088,139 + Echvi_4243 0.18 +0.8 5,088,140 - Echvi_4243 0.18 -0.0 5,088,151 + Echvi_4243 0.19 -1.0 5,088,193 + Echvi_4243 0.23 -0.7 5,088,193 + Echvi_4243 0.23 -1.1 5,088,194 - Echvi_4243 0.23 -0.8 5,088,194 - Echvi_4243 0.23 +1.1 5,088,242 + Echvi_4243 0.27 -0.7 5,088,351 - Echvi_4243 0.36 -1.3 5,088,351 - Echvi_4243 0.36 -1.5 5,088,528 + Echvi_4243 0.52 +1.8 5,088,529 - Echvi_4243 0.52 -0.0 5,088,577 - Echvi_4243 0.56 +0.3 5,088,577 - Echvi_4243 0.56 -2.1 5,088,586 + Echvi_4243 0.57 -0.2 5,088,589 + Echvi_4243 0.57 -0.2 5,088,643 - Echvi_4243 0.62 -0.3 5,088,665 + Echvi_4243 0.63 -1.4 5,088,665 + Echvi_4243 0.63 -1.6 5,088,665 + Echvi_4243 0.63 +0.4 5,088,665 + Echvi_4243 0.63 -1.5 5,088,665 + Echvi_4243 0.63 -0.6 5,088,666 - Echvi_4243 0.63 -0.4 5,088,666 - Echvi_4243 0.63 +0.5 5,088,819 + Echvi_4243 0.77 +0.3 5,088,869 - Echvi_4243 0.81 +2.0 5,088,895 + Echvi_4243 0.83 -1.1 5,088,907 + Echvi_4243 0.84 -0.3 5,089,085 - -0.4 5,089,098 + +0.5 5,089,102 + -0.5 5,089,105 + +0.8 5,089,197 + -1.6 5,089,197 + -0.0 5,089,255 - +0.6 5,089,487 + -0.1 5,089,508 + +0.8 5,089,509 - +0.7 5,089,509 - +0.2 5,089,509 - +1.0 5,089,509 - -0.2 5,089,580 - Echvi_4244 0.17 +0.8 5,089,595 + Echvi_4244 0.22 +0.0 5,089,596 - Echvi_4244 0.22 -0.4 5,089,596 - Echvi_4244 0.22 -0.0 5,089,648 - Echvi_4244 0.38 +1.5 5,089,654 + Echvi_4244 0.40 -1.1 5,089,688 + Echvi_4244 0.50 -1.7 5,089,689 - Echvi_4244 0.50 -0.5 5,089,706 + Echvi_4244 0.55 +0.8 5,089,706 + Echvi_4244 0.55 -1.5 5,089,723 + Echvi_4244 0.60 +2.1 5,089,724 - Echvi_4244 0.61 -3.4 5,089,724 - Echvi_4244 0.61 +0.3 5,089,757 + Echvi_4244 0.71 +0.2 5,089,764 + Echvi_4244 0.73 +0.7 5,089,863 + -0.3 5,089,864 - -0.1 5,089,881 + -2.5 5,089,882 - +0.3 5,089,884 - -0.5 5,089,980 - +0.4 5,090,024 + -0.9 5,090,024 + +0.3 5,090,063 + -0.5 5,090,077 - +1.1
Or see this region's nucleotide sequence