Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2166 and Echvi_2167 are separated by 53 nucleotides Echvi_2167 and Echvi_2168 are separated by 353 nucleotides
Echvi_2166: Echvi_2166 - Heparinase II/III-like protein., at 2,582,722 to 2,584,674
_2166
Echvi_2167: Echvi_2167 - Arylsulfatase A and related enzymes, at 2,584,728 to 2,586,056
_2167
Echvi_2168: Echvi_2168 - RNA polymerase sigma-70 factor, Bacteroides expansion family 1, at 2,586,410 to 2,587,024
_2168
Position (kb)
2584
2585
2586
2587 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2583.730 kb on + strand, within Echvi_2166 at 2583.731 kb on - strand, within Echvi_2166 at 2583.733 kb on + strand, within Echvi_2166 at 2583.734 kb on - strand, within Echvi_2166 at 2583.734 kb on - strand, within Echvi_2166 at 2583.802 kb on + strand, within Echvi_2166 at 2583.802 kb on + strand, within Echvi_2166 at 2583.919 kb on - strand, within Echvi_2166 at 2583.951 kb on + strand, within Echvi_2166 at 2584.038 kb on + strand, within Echvi_2166 at 2584.039 kb on - strand, within Echvi_2166 at 2584.039 kb on - strand, within Echvi_2166 at 2584.039 kb on - strand, within Echvi_2166 at 2584.042 kb on - strand, within Echvi_2166 at 2584.130 kb on - strand, within Echvi_2166 at 2584.159 kb on + strand, within Echvi_2166 at 2584.239 kb on + strand, within Echvi_2166 at 2584.299 kb on + strand, within Echvi_2166 at 2584.299 kb on + strand, within Echvi_2166 at 2584.355 kb on + strand, within Echvi_2166 at 2584.356 kb on - strand, within Echvi_2166 at 2584.356 kb on - strand, within Echvi_2166 at 2584.506 kb on - strand at 2584.528 kb on - strand at 2584.645 kb on - strand at 2584.661 kb on + strand at 2584.662 kb on - strand at 2584.665 kb on + strand at 2584.665 kb on + strand at 2584.665 kb on + strand at 2584.666 kb on - strand at 2584.666 kb on - strand at 2584.666 kb on - strand at 2584.666 kb on - strand at 2584.666 kb on - strand at 2584.666 kb on - strand at 2584.666 kb on - strand at 2584.695 kb on - strand at 2584.708 kb on - strand at 2584.729 kb on + strand at 2584.729 kb on + strand at 2584.729 kb on + strand at 2584.774 kb on + strand at 2584.808 kb on - strand at 2584.808 kb on - strand at 2584.808 kb on - strand at 2584.851 kb on + strand at 2584.871 kb on + strand, within Echvi_2167 at 2584.871 kb on + strand, within Echvi_2167 at 2584.871 kb on + strand, within Echvi_2167 at 2585.000 kb on + strand, within Echvi_2167 at 2585.013 kb on + strand, within Echvi_2167 at 2585.046 kb on - strand, within Echvi_2167 at 2585.047 kb on + strand, within Echvi_2167 at 2585.052 kb on + strand, within Echvi_2167 at 2585.053 kb on - strand, within Echvi_2167 at 2585.093 kb on + strand, within Echvi_2167 at 2585.094 kb on - strand, within Echvi_2167 at 2585.171 kb on - strand, within Echvi_2167 at 2585.171 kb on - strand, within Echvi_2167 at 2585.252 kb on + strand, within Echvi_2167 at 2585.258 kb on + strand, within Echvi_2167 at 2585.415 kb on - strand, within Echvi_2167 at 2585.429 kb on - strand, within Echvi_2167 at 2585.437 kb on + strand, within Echvi_2167 at 2585.438 kb on - strand, within Echvi_2167 at 2585.509 kb on + strand, within Echvi_2167 at 2585.510 kb on - strand, within Echvi_2167 at 2585.510 kb on - strand, within Echvi_2167 at 2585.593 kb on - strand, within Echvi_2167 at 2585.702 kb on - strand, within Echvi_2167 at 2585.702 kb on - strand, within Echvi_2167 at 2585.709 kb on + strand, within Echvi_2167 at 2585.724 kb on - strand, within Echvi_2167 at 2585.738 kb on - strand, within Echvi_2167 at 2585.758 kb on + strand, within Echvi_2167 at 2585.759 kb on - strand, within Echvi_2167 at 2585.763 kb on + strand, within Echvi_2167 at 2585.764 kb on - strand, within Echvi_2167 at 2585.777 kb on - strand, within Echvi_2167 at 2585.783 kb on - strand, within Echvi_2167 at 2585.787 kb on - strand, within Echvi_2167 at 2585.787 kb on - strand, within Echvi_2167 at 2585.860 kb on + strand, within Echvi_2167 at 2585.861 kb on - strand, within Echvi_2167 at 2585.861 kb on - strand, within Echvi_2167 at 2585.861 kb on - strand, within Echvi_2167 at 2585.904 kb on - strand, within Echvi_2167 at 2585.950 kb on + strand at 2586.468 kb on + strand at 2586.468 kb on + strand at 2586.468 kb on + strand at 2586.468 kb on + strand at 2586.512 kb on + strand, within Echvi_2168 at 2586.534 kb on + strand, within Echvi_2168 at 2586.536 kb on + strand, within Echvi_2168 at 2586.594 kb on + strand, within Echvi_2168 at 2586.656 kb on + strand, within Echvi_2168 at 2586.656 kb on + strand, within Echvi_2168 at 2586.657 kb on - strand, within Echvi_2168 at 2586.657 kb on - strand, within Echvi_2168 at 2586.686 kb on + strand, within Echvi_2168 at 2586.691 kb on + strand, within Echvi_2168 at 2586.691 kb on + strand, within Echvi_2168 at 2586.692 kb on - strand, within Echvi_2168 at 2586.750 kb on - strand, within Echvi_2168 at 2586.782 kb on + strand, within Echvi_2168 at 2586.783 kb on - strand, within Echvi_2168 at 2586.851 kb on - strand, within Echvi_2168 at 2586.888 kb on + strand, within Echvi_2168 at 2586.939 kb on + strand, within Echvi_2168 at 2587.022 kb on + strand at 2587.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,583,730 + Echvi_2166 0.52 -0.8 2,583,731 - Echvi_2166 0.52 -1.4 2,583,733 + Echvi_2166 0.52 +0.2 2,583,734 - Echvi_2166 0.52 -2.6 2,583,734 - Echvi_2166 0.52 +0.4 2,583,802 + Echvi_2166 0.55 -0.5 2,583,802 + Echvi_2166 0.55 -0.2 2,583,919 - Echvi_2166 0.61 -2.3 2,583,951 + Echvi_2166 0.63 +1.9 2,584,038 + Echvi_2166 0.67 -2.1 2,584,039 - Echvi_2166 0.67 +0.8 2,584,039 - Echvi_2166 0.67 -1.7 2,584,039 - Echvi_2166 0.67 +0.5 2,584,042 - Echvi_2166 0.68 +0.6 2,584,130 - Echvi_2166 0.72 +0.9 2,584,159 + Echvi_2166 0.74 -0.2 2,584,239 + Echvi_2166 0.78 -1.4 2,584,299 + Echvi_2166 0.81 -0.4 2,584,299 + Echvi_2166 0.81 +1.0 2,584,355 + Echvi_2166 0.84 +1.1 2,584,356 - Echvi_2166 0.84 -0.8 2,584,356 - Echvi_2166 0.84 -0.2 2,584,506 - -0.6 2,584,528 - +0.0 2,584,645 - -1.2 2,584,661 + -0.4 2,584,662 - +0.4 2,584,665 + -0.5 2,584,665 + -0.8 2,584,665 + -0.0 2,584,666 - +1.0 2,584,666 - +0.6 2,584,666 - -0.1 2,584,666 - +0.2 2,584,666 - +0.9 2,584,666 - +0.0 2,584,666 - -2.3 2,584,695 - -2.3 2,584,708 - +0.6 2,584,729 + +0.2 2,584,729 + -0.1 2,584,729 + +1.5 2,584,774 + +1.1 2,584,808 - +3.0 2,584,808 - +0.7 2,584,808 - -0.1 2,584,851 + -0.1 2,584,871 + Echvi_2167 0.11 -0.9 2,584,871 + Echvi_2167 0.11 -1.3 2,584,871 + Echvi_2167 0.11 +0.7 2,585,000 + Echvi_2167 0.20 -0.9 2,585,013 + Echvi_2167 0.21 +0.1 2,585,046 - Echvi_2167 0.24 -0.7 2,585,047 + Echvi_2167 0.24 -0.9 2,585,052 + Echvi_2167 0.24 +1.2 2,585,053 - Echvi_2167 0.24 +0.9 2,585,093 + Echvi_2167 0.27 -2.5 2,585,094 - Echvi_2167 0.28 +1.8 2,585,171 - Echvi_2167 0.33 -0.5 2,585,171 - Echvi_2167 0.33 +0.8 2,585,252 + Echvi_2167 0.39 +0.6 2,585,258 + Echvi_2167 0.40 -0.2 2,585,415 - Echvi_2167 0.52 +0.2 2,585,429 - Echvi_2167 0.53 +0.5 2,585,437 + Echvi_2167 0.53 +1.6 2,585,438 - Echvi_2167 0.53 +0.0 2,585,509 + Echvi_2167 0.59 +0.3 2,585,510 - Echvi_2167 0.59 -0.4 2,585,510 - Echvi_2167 0.59 -2.4 2,585,593 - Echvi_2167 0.65 +0.8 2,585,702 - Echvi_2167 0.73 +0.5 2,585,702 - Echvi_2167 0.73 -0.9 2,585,709 + Echvi_2167 0.74 -0.3 2,585,724 - Echvi_2167 0.75 -0.4 2,585,738 - Echvi_2167 0.76 -1.9 2,585,758 + Echvi_2167 0.78 -0.4 2,585,759 - Echvi_2167 0.78 -1.4 2,585,763 + Echvi_2167 0.78 +0.0 2,585,764 - Echvi_2167 0.78 -0.2 2,585,777 - Echvi_2167 0.79 -1.0 2,585,783 - Echvi_2167 0.79 -0.5 2,585,787 - Echvi_2167 0.80 +0.6 2,585,787 - Echvi_2167 0.80 +0.0 2,585,860 + Echvi_2167 0.85 -2.0 2,585,861 - Echvi_2167 0.85 +0.8 2,585,861 - Echvi_2167 0.85 +0.5 2,585,861 - Echvi_2167 0.85 +0.3 2,585,904 - Echvi_2167 0.88 +0.5 2,585,950 + +1.8 2,586,468 + +0.4 2,586,468 + -1.3 2,586,468 + -0.8 2,586,468 + -0.3 2,586,512 + Echvi_2168 0.17 +0.0 2,586,534 + Echvi_2168 0.20 +0.4 2,586,536 + Echvi_2168 0.20 -0.3 2,586,594 + Echvi_2168 0.30 -0.2 2,586,656 + Echvi_2168 0.40 -0.1 2,586,656 + Echvi_2168 0.40 +1.6 2,586,657 - Echvi_2168 0.40 +1.5 2,586,657 - Echvi_2168 0.40 +1.2 2,586,686 + Echvi_2168 0.45 +0.7 2,586,691 + Echvi_2168 0.46 +0.0 2,586,691 + Echvi_2168 0.46 +0.6 2,586,692 - Echvi_2168 0.46 -2.0 2,586,750 - Echvi_2168 0.55 -0.8 2,586,782 + Echvi_2168 0.60 -1.8 2,586,783 - Echvi_2168 0.61 -1.5 2,586,851 - Echvi_2168 0.72 +0.2 2,586,888 + Echvi_2168 0.78 -0.6 2,586,939 + Echvi_2168 0.86 -2.0 2,587,022 + -0.2 2,587,023 - +0.6
Or see this region's nucleotide sequence