Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2035 and Echvi_2036 are separated by 126 nucleotides Echvi_2036 and Echvi_2037 are separated by 21 nucleotides Echvi_2037 and Echvi_2038 are separated by 373 nucleotides
Echvi_2035: Echvi_2035 - SusD family., at 2,397,892 to 2,399,604
_2035
Echvi_2036: Echvi_2036 - Predicted xylanase/chitin deacetylase, at 2,399,731 to 2,400,519
_2036
Echvi_2037: Echvi_2037 - Glycosyl hydrolase family 9./N-terminal ig-like domain of cellulase., at 2,400,541 to 2,402,325
_2037
Echvi_2038: Echvi_2038 - Beta-glucosidase-related glycosidases, at 2,402,699 to 2,405,650
_2038
Position (kb)
2400
2401
2402
2403 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2399.554 kb on + strand at 2399.602 kb on + strand at 2399.602 kb on + strand at 2399.603 kb on - strand at 2399.611 kb on - strand at 2399.617 kb on + strand at 2399.617 kb on + strand at 2399.625 kb on - strand at 2399.625 kb on - strand at 2399.634 kb on + strand at 2399.641 kb on + strand at 2399.642 kb on - strand at 2399.642 kb on - strand at 2399.672 kb on - strand at 2399.675 kb on - strand at 2399.695 kb on + strand at 2399.696 kb on - strand at 2399.725 kb on - strand at 2399.755 kb on + strand at 2399.755 kb on + strand at 2399.783 kb on + strand at 2399.783 kb on + strand at 2399.783 kb on + strand at 2399.823 kb on + strand, within Echvi_2036 at 2399.823 kb on + strand, within Echvi_2036 at 2399.824 kb on - strand, within Echvi_2036 at 2399.824 kb on - strand, within Echvi_2036 at 2399.895 kb on + strand, within Echvi_2036 at 2399.942 kb on + strand, within Echvi_2036 at 2399.943 kb on - strand, within Echvi_2036 at 2399.943 kb on - strand, within Echvi_2036 at 2399.963 kb on + strand, within Echvi_2036 at 2400.076 kb on + strand, within Echvi_2036 at 2400.076 kb on + strand, within Echvi_2036 at 2400.149 kb on - strand, within Echvi_2036 at 2400.174 kb on - strand, within Echvi_2036 at 2400.273 kb on + strand, within Echvi_2036 at 2400.273 kb on + strand, within Echvi_2036 at 2400.303 kb on + strand, within Echvi_2036 at 2400.304 kb on - strand, within Echvi_2036 at 2400.304 kb on - strand, within Echvi_2036 at 2400.325 kb on + strand, within Echvi_2036 at 2400.326 kb on - strand, within Echvi_2036 at 2400.326 kb on - strand, within Echvi_2036 at 2400.347 kb on + strand, within Echvi_2036 at 2400.348 kb on - strand, within Echvi_2036 at 2400.356 kb on + strand, within Echvi_2036 at 2400.371 kb on + strand, within Echvi_2036 at 2400.372 kb on - strand, within Echvi_2036 at 2400.375 kb on - strand, within Echvi_2036 at 2400.395 kb on + strand, within Echvi_2036 at 2400.395 kb on + strand, within Echvi_2036 at 2400.396 kb on - strand, within Echvi_2036 at 2400.416 kb on + strand, within Echvi_2036 at 2400.443 kb on - strand at 2400.447 kb on + strand at 2400.459 kb on - strand at 2400.459 kb on - strand at 2400.465 kb on + strand at 2400.468 kb on + strand at 2400.474 kb on - strand at 2400.488 kb on - strand at 2400.495 kb on - strand at 2400.616 kb on + strand at 2400.617 kb on - strand at 2400.641 kb on - strand at 2400.641 kb on - strand at 2400.655 kb on - strand at 2400.788 kb on - strand, within Echvi_2037 at 2400.830 kb on - strand, within Echvi_2037 at 2400.832 kb on + strand, within Echvi_2037 at 2400.832 kb on + strand, within Echvi_2037 at 2400.832 kb on + strand, within Echvi_2037 at 2400.833 kb on - strand, within Echvi_2037 at 2400.833 kb on - strand, within Echvi_2037 at 2400.893 kb on - strand at 2400.893 kb on - strand, within Echvi_2037 at 2400.915 kb on - strand, within Echvi_2037 at 2400.947 kb on - strand, within Echvi_2037 at 2400.947 kb on - strand, within Echvi_2037 at 2400.949 kb on - strand, within Echvi_2037 at 2401.069 kb on + strand, within Echvi_2037 at 2401.078 kb on - strand, within Echvi_2037 at 2401.078 kb on - strand, within Echvi_2037 at 2401.087 kb on + strand, within Echvi_2037 at 2401.087 kb on + strand, within Echvi_2037 at 2401.087 kb on + strand, within Echvi_2037 at 2401.088 kb on - strand, within Echvi_2037 at 2401.107 kb on - strand, within Echvi_2037 at 2401.107 kb on - strand, within Echvi_2037 at 2401.107 kb on - strand, within Echvi_2037 at 2401.124 kb on - strand, within Echvi_2037 at 2401.124 kb on - strand, within Echvi_2037 at 2401.144 kb on - strand, within Echvi_2037 at 2401.228 kb on - strand, within Echvi_2037 at 2401.266 kb on - strand, within Echvi_2037 at 2401.292 kb on - strand, within Echvi_2037 at 2401.294 kb on - strand, within Echvi_2037 at 2401.339 kb on - strand, within Echvi_2037 at 2401.391 kb on - strand, within Echvi_2037 at 2401.393 kb on - strand, within Echvi_2037 at 2401.421 kb on + strand, within Echvi_2037 at 2401.422 kb on - strand, within Echvi_2037 at 2401.527 kb on - strand, within Echvi_2037 at 2401.528 kb on + strand, within Echvi_2037 at 2401.592 kb on - strand, within Echvi_2037 at 2401.593 kb on + strand, within Echvi_2037 at 2401.593 kb on + strand, within Echvi_2037 at 2401.593 kb on + strand, within Echvi_2037 at 2401.644 kb on + strand, within Echvi_2037 at 2401.687 kb on + strand, within Echvi_2037 at 2401.688 kb on - strand, within Echvi_2037 at 2401.688 kb on - strand, within Echvi_2037 at 2401.762 kb on - strand, within Echvi_2037 at 2401.828 kb on + strand, within Echvi_2037 at 2401.828 kb on + strand, within Echvi_2037 at 2401.829 kb on - strand, within Echvi_2037 at 2401.831 kb on + strand, within Echvi_2037 at 2401.832 kb on - strand, within Echvi_2037 at 2401.848 kb on - strand, within Echvi_2037 at 2401.850 kb on - strand, within Echvi_2037 at 2401.851 kb on + strand, within Echvi_2037 at 2401.900 kb on - strand, within Echvi_2037 at 2401.946 kb on + strand, within Echvi_2037 at 2401.947 kb on - strand, within Echvi_2037 at 2401.952 kb on - strand, within Echvi_2037 at 2401.978 kb on + strand, within Echvi_2037 at 2401.981 kb on - strand, within Echvi_2037 at 2402.149 kb on + strand at 2402.150 kb on - strand at 2402.150 kb on - strand at 2402.150 kb on - strand at 2402.151 kb on + strand at 2402.152 kb on - strand at 2402.255 kb on - strand at 2402.256 kb on + strand at 2402.256 kb on + strand at 2402.257 kb on - strand at 2402.257 kb on - strand at 2402.257 kb on - strand at 2402.368 kb on + strand at 2402.524 kb on - strand at 2402.563 kb on + strand at 2402.564 kb on - strand at 2402.665 kb on - strand at 2402.665 kb on - strand at 2402.683 kb on - strand at 2402.683 kb on - strand at 2402.683 kb on - strand at 2402.689 kb on + strand at 2402.693 kb on + strand at 2402.759 kb on + strand at 2402.760 kb on - strand at 2402.760 kb on - strand at 2402.761 kb on + strand at 2402.761 kb on + strand at 2402.761 kb on + strand at 2402.762 kb on - strand at 2402.785 kb on + strand at 2402.786 kb on - strand at 2402.786 kb on - strand at 2402.788 kb on + strand at 2402.878 kb on + strand at 2402.879 kb on - strand at 2402.879 kb on - strand at 2402.947 kb on + strand at 2402.948 kb on - strand at 2402.948 kb on - strand at 2402.964 kb on + strand at 2402.998 kb on + strand, within Echvi_2038 at 2403.025 kb on + strand, within Echvi_2038 at 2403.025 kb on + strand, within Echvi_2038 at 2403.026 kb on - strand, within Echvi_2038 at 2403.302 kb on + strand, within Echvi_2038 at 2403.303 kb on - strand, within Echvi_2038 at 2403.303 kb on - strand, within Echvi_2038 at 2403.304 kb on + strand, within Echvi_2038 at 2403.304 kb on + strand, within Echvi_2038 at 2403.304 kb on + strand, within Echvi_2038 at 2403.305 kb on - strand, within Echvi_2038 at 2403.305 kb on - strand, within Echvi_2038
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,399,554 + -0.9 2,399,602 + +1.2 2,399,602 + +1.0 2,399,603 - -0.0 2,399,611 - -0.7 2,399,617 + -0.5 2,399,617 + -1.3 2,399,625 - +0.0 2,399,625 - -0.6 2,399,634 + -0.5 2,399,641 + -1.5 2,399,642 - +0.2 2,399,642 - +0.4 2,399,672 - -0.7 2,399,675 - +1.9 2,399,695 + +2.0 2,399,696 - -0.6 2,399,725 - -1.1 2,399,755 + -2.1 2,399,755 + -0.9 2,399,783 + -0.2 2,399,783 + +0.8 2,399,783 + +1.3 2,399,823 + Echvi_2036 0.12 -0.0 2,399,823 + Echvi_2036 0.12 -0.1 2,399,824 - Echvi_2036 0.12 -0.1 2,399,824 - Echvi_2036 0.12 -0.4 2,399,895 + Echvi_2036 0.21 -0.9 2,399,942 + Echvi_2036 0.27 -1.3 2,399,943 - Echvi_2036 0.27 -1.5 2,399,943 - Echvi_2036 0.27 +0.5 2,399,963 + Echvi_2036 0.29 +0.0 2,400,076 + Echvi_2036 0.44 +0.7 2,400,076 + Echvi_2036 0.44 -0.5 2,400,149 - Echvi_2036 0.53 +0.7 2,400,174 - Echvi_2036 0.56 +0.4 2,400,273 + Echvi_2036 0.69 +1.2 2,400,273 + Echvi_2036 0.69 +1.2 2,400,303 + Echvi_2036 0.72 -0.3 2,400,304 - Echvi_2036 0.73 -0.5 2,400,304 - Echvi_2036 0.73 -0.4 2,400,325 + Echvi_2036 0.75 -1.0 2,400,326 - Echvi_2036 0.75 +0.2 2,400,326 - Echvi_2036 0.75 -0.3 2,400,347 + Echvi_2036 0.78 -1.7 2,400,348 - Echvi_2036 0.78 +0.5 2,400,356 + Echvi_2036 0.79 -1.1 2,400,371 + Echvi_2036 0.81 -0.3 2,400,372 - Echvi_2036 0.81 +0.2 2,400,375 - Echvi_2036 0.82 -0.3 2,400,395 + Echvi_2036 0.84 +0.1 2,400,395 + Echvi_2036 0.84 -2.4 2,400,396 - Echvi_2036 0.84 +1.5 2,400,416 + Echvi_2036 0.87 -0.2 2,400,443 - +0.5 2,400,447 + -0.4 2,400,459 - -1.5 2,400,459 - -0.4 2,400,465 + +0.0 2,400,468 + +1.7 2,400,474 - -1.0 2,400,488 - +1.0 2,400,495 - -0.9 2,400,616 + +0.2 2,400,617 - -0.1 2,400,641 - +0.7 2,400,641 - -1.5 2,400,655 - -0.9 2,400,788 - Echvi_2037 0.14 +0.2 2,400,830 - Echvi_2037 0.16 -1.7 2,400,832 + Echvi_2037 0.16 -2.2 2,400,832 + Echvi_2037 0.16 -2.4 2,400,832 + Echvi_2037 0.16 -0.3 2,400,833 - Echvi_2037 0.16 -2.0 2,400,833 - Echvi_2037 0.16 -0.3 2,400,893 - +3.8 2,400,893 - Echvi_2037 0.20 -1.1 2,400,915 - Echvi_2037 0.21 -1.7 2,400,947 - Echvi_2037 0.23 -0.9 2,400,947 - Echvi_2037 0.23 -0.8 2,400,949 - Echvi_2037 0.23 -0.3 2,401,069 + Echvi_2037 0.30 -2.2 2,401,078 - Echvi_2037 0.30 -0.3 2,401,078 - Echvi_2037 0.30 -0.6 2,401,087 + Echvi_2037 0.31 -0.6 2,401,087 + Echvi_2037 0.31 +1.0 2,401,087 + Echvi_2037 0.31 +0.7 2,401,088 - Echvi_2037 0.31 +0.3 2,401,107 - Echvi_2037 0.32 -1.4 2,401,107 - Echvi_2037 0.32 -1.1 2,401,107 - Echvi_2037 0.32 -0.6 2,401,124 - Echvi_2037 0.33 -0.2 2,401,124 - Echvi_2037 0.33 -0.3 2,401,144 - Echvi_2037 0.34 -1.0 2,401,228 - Echvi_2037 0.38 -0.6 2,401,266 - Echvi_2037 0.41 +1.6 2,401,292 - Echvi_2037 0.42 -1.2 2,401,294 - Echvi_2037 0.42 -0.6 2,401,339 - Echvi_2037 0.45 +0.2 2,401,391 - Echvi_2037 0.48 -0.1 2,401,393 - Echvi_2037 0.48 -1.6 2,401,421 + Echvi_2037 0.49 +0.2 2,401,422 - Echvi_2037 0.49 +0.3 2,401,527 - Echvi_2037 0.55 +0.7 2,401,528 + Echvi_2037 0.55 +3.6 2,401,592 - Echvi_2037 0.59 +0.2 2,401,593 + Echvi_2037 0.59 -1.1 2,401,593 + Echvi_2037 0.59 +0.3 2,401,593 + Echvi_2037 0.59 +0.0 2,401,644 + Echvi_2037 0.62 -0.5 2,401,687 + Echvi_2037 0.64 +0.2 2,401,688 - Echvi_2037 0.64 -1.7 2,401,688 - Echvi_2037 0.64 +0.1 2,401,762 - Echvi_2037 0.68 -0.1 2,401,828 + Echvi_2037 0.72 -0.3 2,401,828 + Echvi_2037 0.72 -2.6 2,401,829 - Echvi_2037 0.72 -2.0 2,401,831 + Echvi_2037 0.72 +1.0 2,401,832 - Echvi_2037 0.72 -0.9 2,401,848 - Echvi_2037 0.73 +0.8 2,401,850 - Echvi_2037 0.73 -0.3 2,401,851 + Echvi_2037 0.73 -2.1 2,401,900 - Echvi_2037 0.76 -0.5 2,401,946 + Echvi_2037 0.79 -1.4 2,401,947 - Echvi_2037 0.79 +0.2 2,401,952 - Echvi_2037 0.79 +0.0 2,401,978 + Echvi_2037 0.81 +0.0 2,401,981 - Echvi_2037 0.81 -0.2 2,402,149 + +1.4 2,402,150 - +1.7 2,402,150 - -0.1 2,402,150 - -1.5 2,402,151 + +1.5 2,402,152 - +0.4 2,402,255 - -1.1 2,402,256 + -1.2 2,402,256 + -1.4 2,402,257 - +1.5 2,402,257 - +0.5 2,402,257 - -1.0 2,402,368 + +0.4 2,402,524 - -0.2 2,402,563 + -2.6 2,402,564 - -0.3 2,402,665 - +1.7 2,402,665 - +2.3 2,402,683 - -1.0 2,402,683 - -0.3 2,402,683 - -0.1 2,402,689 + +0.4 2,402,693 + +1.4 2,402,759 + -1.4 2,402,760 - +0.3 2,402,760 - -0.6 2,402,761 + -0.3 2,402,761 + -1.7 2,402,761 + +0.6 2,402,762 - -0.6 2,402,785 + -0.1 2,402,786 - -1.3 2,402,786 - -0.3 2,402,788 + +0.8 2,402,878 + -1.9 2,402,879 - +0.4 2,402,879 - -0.6 2,402,947 + -1.0 2,402,948 - +0.3 2,402,948 - +0.1 2,402,964 + -0.6 2,402,998 + Echvi_2038 0.10 -1.0 2,403,025 + Echvi_2038 0.11 -0.4 2,403,025 + Echvi_2038 0.11 +1.2 2,403,026 - Echvi_2038 0.11 -0.3 2,403,302 + Echvi_2038 0.20 -0.2 2,403,303 - Echvi_2038 0.20 -0.7 2,403,303 - Echvi_2038 0.20 -0.1 2,403,304 + Echvi_2038 0.20 -0.2 2,403,304 + Echvi_2038 0.20 -0.1 2,403,304 + Echvi_2038 0.20 +0.3 2,403,305 - Echvi_2038 0.21 -0.1 2,403,305 - Echvi_2038 0.21 -0.8
Or see this region's nucleotide sequence