Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0913

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0911 and Echvi_0912 are separated by 21 nucleotidesEchvi_0912 and Echvi_0913 are separated by 79 nucleotidesEchvi_0913 and Echvi_0914 are separated by 137 nucleotides Echvi_0911: Echvi_0911 - isoleucyl-tRNA synthetase, at 1,038,170 to 1,041,556 _0911 Echvi_0912: Echvi_0912 - Lipoprotein signal peptidase, at 1,041,578 to 1,042,231 _0912 Echvi_0913: Echvi_0913 - Predicted membrane protein (DUF2306)., at 1,042,311 to 1,042,982 _0913 Echvi_0914: Echvi_0914 - Transposase and inactivated derivatives, at 1,043,120 to 1,044,352 _0914 Position (kb) 1042 1043Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1041.575 kb on + strandat 1042.234 kb on + strandat 1042.267 kb on + strandat 1042.272 kb on + strandat 1042.272 kb on + strandat 1042.272 kb on + strandat 1042.272 kb on + strandat 1042.273 kb on - strandat 1042.273 kb on - strandat 1042.307 kb on + strandat 1042.312 kb on + strandat 1042.312 kb on + strandat 1042.312 kb on + strandat 1042.313 kb on - strandat 1042.313 kb on - strandat 1042.317 kb on + strandat 1042.318 kb on - strandat 1042.430 kb on - strand, within Echvi_0913at 1042.430 kb on - strand, within Echvi_0913at 1042.433 kb on + strand, within Echvi_0913at 1042.434 kb on - strand, within Echvi_0913at 1042.434 kb on - strand, within Echvi_0913at 1042.467 kb on - strand, within Echvi_0913at 1042.467 kb on - strand, within Echvi_0913at 1042.468 kb on + strand, within Echvi_0913at 1042.468 kb on + strand, within Echvi_0913at 1042.469 kb on - strand, within Echvi_0913at 1042.469 kb on - strand, within Echvi_0913at 1042.469 kb on - strand, within Echvi_0913at 1042.490 kb on + strand, within Echvi_0913at 1042.490 kb on + strand, within Echvi_0913at 1042.491 kb on - strand, within Echvi_0913at 1042.491 kb on - strand, within Echvi_0913at 1042.491 kb on - strand, within Echvi_0913at 1042.521 kb on + strand, within Echvi_0913at 1042.521 kb on + strand, within Echvi_0913at 1042.522 kb on - strand, within Echvi_0913at 1042.522 kb on - strand, within Echvi_0913at 1042.534 kb on + strand, within Echvi_0913at 1042.534 kb on + strand, within Echvi_0913at 1042.541 kb on + strand, within Echvi_0913at 1042.659 kb on + strand, within Echvi_0913at 1042.660 kb on - strand, within Echvi_0913at 1042.755 kb on - strand, within Echvi_0913at 1042.755 kb on - strand, within Echvi_0913at 1042.755 kb on - strand, within Echvi_0913at 1042.756 kb on + strand, within Echvi_0913at 1042.756 kb on + strand, within Echvi_0913at 1042.756 kb on + strand, within Echvi_0913at 1042.756 kb on + strand, within Echvi_0913at 1042.757 kb on - strand, within Echvi_0913at 1042.757 kb on - strand, within Echvi_0913at 1042.757 kb on - strand, within Echvi_0913at 1042.757 kb on - strand, within Echvi_0913at 1042.757 kb on - strand, within Echvi_0913at 1042.764 kb on - strand, within Echvi_0913at 1042.777 kb on - strand, within Echvi_0913at 1042.836 kb on + strand, within Echvi_0913at 1042.954 kb on - strandat 1042.985 kb on + strandat 1042.986 kb on - strandat 1042.986 kb on - strandat 1042.989 kb on + strandat 1042.989 kb on + strandat 1042.989 kb on + strandat 1042.989 kb on + strandat 1042.989 kb on + strandat 1042.990 kb on - strandat 1042.990 kb on - strandat 1042.990 kb on - strandat 1043.000 kb on - strandat 1043.006 kb on + strandat 1043.009 kb on + strandat 1043.010 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,041,575 + +0.3
1,042,234 + +1.0
1,042,267 + -0.2
1,042,272 + +0.0
1,042,272 + +0.0
1,042,272 + -1.6
1,042,272 + +0.3
1,042,273 - +1.1
1,042,273 - +0.1
1,042,307 + +0.4
1,042,312 + +0.1
1,042,312 + +0.2
1,042,312 + -0.1
1,042,313 - -3.2
1,042,313 - -0.7
1,042,317 + +0.1
1,042,318 - +0.2
1,042,430 - Echvi_0913 0.18 +0.6
1,042,430 - Echvi_0913 0.18 -0.4
1,042,433 + Echvi_0913 0.18 +1.1
1,042,434 - Echvi_0913 0.18 -0.4
1,042,434 - Echvi_0913 0.18 -0.9
1,042,467 - Echvi_0913 0.23 -0.6
1,042,467 - Echvi_0913 0.23 +0.6
1,042,468 + Echvi_0913 0.23 +0.5
1,042,468 + Echvi_0913 0.23 +0.8
1,042,469 - Echvi_0913 0.24 +1.4
1,042,469 - Echvi_0913 0.24 +0.1
1,042,469 - Echvi_0913 0.24 -1.3
1,042,490 + Echvi_0913 0.27 +2.0
1,042,490 + Echvi_0913 0.27 -1.0
1,042,491 - Echvi_0913 0.27 +0.3
1,042,491 - Echvi_0913 0.27 -1.4
1,042,491 - Echvi_0913 0.27 -0.5
1,042,521 + Echvi_0913 0.31 +0.6
1,042,521 + Echvi_0913 0.31 -0.2
1,042,522 - Echvi_0913 0.31 +1.4
1,042,522 - Echvi_0913 0.31 -1.4
1,042,534 + Echvi_0913 0.33 +0.2
1,042,534 + Echvi_0913 0.33 -0.8
1,042,541 + Echvi_0913 0.34 -0.2
1,042,659 + Echvi_0913 0.52 -2.4
1,042,660 - Echvi_0913 0.52 +0.5
1,042,755 - Echvi_0913 0.66 -0.2
1,042,755 - Echvi_0913 0.66 -1.2
1,042,755 - Echvi_0913 0.66 +1.2
1,042,756 + Echvi_0913 0.66 +1.1
1,042,756 + Echvi_0913 0.66 -0.7
1,042,756 + Echvi_0913 0.66 -1.8
1,042,756 + Echvi_0913 0.66 -2.8
1,042,757 - Echvi_0913 0.66 -2.6
1,042,757 - Echvi_0913 0.66 -2.0
1,042,757 - Echvi_0913 0.66 -1.0
1,042,757 - Echvi_0913 0.66 -0.8
1,042,757 - Echvi_0913 0.66 -1.6
1,042,764 - Echvi_0913 0.67 -1.1
1,042,777 - Echvi_0913 0.69 +0.1
1,042,836 + Echvi_0913 0.78 +0.3
1,042,954 - +0.3
1,042,985 + +0.4
1,042,986 - -1.2
1,042,986 - -0.0
1,042,989 + +0.9
1,042,989 + +1.6
1,042,989 + +1.1
1,042,989 + -0.2
1,042,989 + +0.6
1,042,990 - +0.2
1,042,990 - +0.3
1,042,990 - +0.1
1,043,000 - +0.2
1,043,006 + -1.0
1,043,009 + -1.4
1,043,010 - -0.2

Or see this region's nucleotide sequence