Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0911 and Echvi_0912 are separated by 21 nucleotides Echvi_0912 and Echvi_0913 are separated by 79 nucleotides Echvi_0913 and Echvi_0914 are separated by 137 nucleotides
Echvi_0911: Echvi_0911 - isoleucyl-tRNA synthetase, at 1,038,170 to 1,041,556
_0911
Echvi_0912: Echvi_0912 - Lipoprotein signal peptidase, at 1,041,578 to 1,042,231
_0912
Echvi_0913: Echvi_0913 - Predicted membrane protein (DUF2306)., at 1,042,311 to 1,042,982
_0913
Echvi_0914: Echvi_0914 - Transposase and inactivated derivatives, at 1,043,120 to 1,044,352
_0914
Position (kb)
1042
1043 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1041.575 kb on + strand at 1042.234 kb on + strand at 1042.267 kb on + strand at 1042.272 kb on + strand at 1042.272 kb on + strand at 1042.272 kb on + strand at 1042.272 kb on + strand at 1042.273 kb on - strand at 1042.273 kb on - strand at 1042.307 kb on + strand at 1042.312 kb on + strand at 1042.312 kb on + strand at 1042.312 kb on + strand at 1042.313 kb on - strand at 1042.313 kb on - strand at 1042.317 kb on + strand at 1042.318 kb on - strand at 1042.430 kb on - strand, within Echvi_0913 at 1042.430 kb on - strand, within Echvi_0913 at 1042.433 kb on + strand, within Echvi_0913 at 1042.434 kb on - strand, within Echvi_0913 at 1042.434 kb on - strand, within Echvi_0913 at 1042.467 kb on - strand, within Echvi_0913 at 1042.467 kb on - strand, within Echvi_0913 at 1042.468 kb on + strand, within Echvi_0913 at 1042.468 kb on + strand, within Echvi_0913 at 1042.469 kb on - strand, within Echvi_0913 at 1042.469 kb on - strand, within Echvi_0913 at 1042.469 kb on - strand, within Echvi_0913 at 1042.490 kb on + strand, within Echvi_0913 at 1042.490 kb on + strand, within Echvi_0913 at 1042.491 kb on - strand, within Echvi_0913 at 1042.491 kb on - strand, within Echvi_0913 at 1042.491 kb on - strand, within Echvi_0913 at 1042.521 kb on + strand, within Echvi_0913 at 1042.521 kb on + strand, within Echvi_0913 at 1042.522 kb on - strand, within Echvi_0913 at 1042.522 kb on - strand, within Echvi_0913 at 1042.534 kb on + strand, within Echvi_0913 at 1042.534 kb on + strand, within Echvi_0913 at 1042.541 kb on + strand, within Echvi_0913 at 1042.659 kb on + strand, within Echvi_0913 at 1042.660 kb on - strand, within Echvi_0913 at 1042.755 kb on - strand, within Echvi_0913 at 1042.755 kb on - strand, within Echvi_0913 at 1042.755 kb on - strand, within Echvi_0913 at 1042.756 kb on + strand, within Echvi_0913 at 1042.756 kb on + strand, within Echvi_0913 at 1042.756 kb on + strand, within Echvi_0913 at 1042.756 kb on + strand, within Echvi_0913 at 1042.757 kb on - strand, within Echvi_0913 at 1042.757 kb on - strand, within Echvi_0913 at 1042.757 kb on - strand, within Echvi_0913 at 1042.757 kb on - strand, within Echvi_0913 at 1042.757 kb on - strand, within Echvi_0913 at 1042.764 kb on - strand, within Echvi_0913 at 1042.777 kb on - strand, within Echvi_0913 at 1042.836 kb on + strand, within Echvi_0913 at 1042.954 kb on - strand at 1042.985 kb on + strand at 1042.986 kb on - strand at 1042.986 kb on - strand at 1042.989 kb on + strand at 1042.989 kb on + strand at 1042.989 kb on + strand at 1042.989 kb on + strand at 1042.989 kb on + strand at 1042.990 kb on - strand at 1042.990 kb on - strand at 1042.990 kb on - strand at 1043.000 kb on - strand at 1043.006 kb on + strand at 1043.009 kb on + strand at 1043.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,041,575 + +0.3 1,042,234 + +1.0 1,042,267 + -0.2 1,042,272 + +0.0 1,042,272 + +0.0 1,042,272 + -1.6 1,042,272 + +0.3 1,042,273 - +1.1 1,042,273 - +0.1 1,042,307 + +0.4 1,042,312 + +0.1 1,042,312 + +0.2 1,042,312 + -0.1 1,042,313 - -3.2 1,042,313 - -0.7 1,042,317 + +0.1 1,042,318 - +0.2 1,042,430 - Echvi_0913 0.18 +0.6 1,042,430 - Echvi_0913 0.18 -0.4 1,042,433 + Echvi_0913 0.18 +1.1 1,042,434 - Echvi_0913 0.18 -0.4 1,042,434 - Echvi_0913 0.18 -0.9 1,042,467 - Echvi_0913 0.23 -0.6 1,042,467 - Echvi_0913 0.23 +0.6 1,042,468 + Echvi_0913 0.23 +0.5 1,042,468 + Echvi_0913 0.23 +0.8 1,042,469 - Echvi_0913 0.24 +1.4 1,042,469 - Echvi_0913 0.24 +0.1 1,042,469 - Echvi_0913 0.24 -1.3 1,042,490 + Echvi_0913 0.27 +2.0 1,042,490 + Echvi_0913 0.27 -1.0 1,042,491 - Echvi_0913 0.27 +0.3 1,042,491 - Echvi_0913 0.27 -1.4 1,042,491 - Echvi_0913 0.27 -0.5 1,042,521 + Echvi_0913 0.31 +0.6 1,042,521 + Echvi_0913 0.31 -0.2 1,042,522 - Echvi_0913 0.31 +1.4 1,042,522 - Echvi_0913 0.31 -1.4 1,042,534 + Echvi_0913 0.33 +0.2 1,042,534 + Echvi_0913 0.33 -0.8 1,042,541 + Echvi_0913 0.34 -0.2 1,042,659 + Echvi_0913 0.52 -2.4 1,042,660 - Echvi_0913 0.52 +0.5 1,042,755 - Echvi_0913 0.66 -0.2 1,042,755 - Echvi_0913 0.66 -1.2 1,042,755 - Echvi_0913 0.66 +1.2 1,042,756 + Echvi_0913 0.66 +1.1 1,042,756 + Echvi_0913 0.66 -0.7 1,042,756 + Echvi_0913 0.66 -1.8 1,042,756 + Echvi_0913 0.66 -2.8 1,042,757 - Echvi_0913 0.66 -2.6 1,042,757 - Echvi_0913 0.66 -2.0 1,042,757 - Echvi_0913 0.66 -1.0 1,042,757 - Echvi_0913 0.66 -0.8 1,042,757 - Echvi_0913 0.66 -1.6 1,042,764 - Echvi_0913 0.67 -1.1 1,042,777 - Echvi_0913 0.69 +0.1 1,042,836 + Echvi_0913 0.78 +0.3 1,042,954 - +0.3 1,042,985 + +0.4 1,042,986 - -1.2 1,042,986 - -0.0 1,042,989 + +0.9 1,042,989 + +1.6 1,042,989 + +1.1 1,042,989 + -0.2 1,042,989 + +0.6 1,042,990 - +0.2 1,042,990 - +0.3 1,042,990 - +0.1 1,043,000 - +0.2 1,043,006 + -1.0 1,043,009 + -1.4 1,043,010 - -0.2
Or see this region's nucleotide sequence