Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0127 and Echvi_0128 are separated by 73 nucleotides Echvi_0128 and Echvi_0129 are separated by 20 nucleotides Echvi_0129 and Echvi_0130 are separated by 26 nucleotides Echvi_0130 and Echvi_0131 are separated by 121 nucleotides
Echvi_0127: Echvi_0127 - hypothetical protein, at 127,202 to 127,438
_0127
Echvi_0128: Echvi_0128 - hypothetical protein, at 127,512 to 127,607
_0128
Echvi_0129: Echvi_0129 - hypothetical protein, at 127,628 to 128,110
_0129
Echvi_0130: Echvi_0130 - Predicted metal-dependent hydrolase with the TIM-barrel fold, at 128,137 to 129,777
_0130
Echvi_0131: Echvi_0131 - DNA uptake protein and related DNA-binding proteins, at 129,899 to 130,612
_0131
Position (kb) 128
129
130 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 127.185 kb on + strand at 127.193 kb on + strand at 127.198 kb on + strand at 127.198 kb on + strand at 127.200 kb on + strand at 127.240 kb on + strand, within Echvi_0127 at 127.250 kb on + strand, within Echvi_0127 at 127.280 kb on - strand, within Echvi_0127 at 127.424 kb on - strand at 127.424 kb on - strand at 127.536 kb on - strand, within Echvi_0128 at 127.650 kb on - strand at 127.659 kb on + strand at 127.659 kb on + strand at 127.660 kb on - strand at 127.660 kb on - strand at 127.660 kb on - strand at 127.844 kb on + strand, within Echvi_0129 at 127.844 kb on + strand, within Echvi_0129 at 127.847 kb on - strand, within Echvi_0129 at 127.847 kb on - strand, within Echvi_0129 at 127.873 kb on - strand, within Echvi_0129 at 127.942 kb on + strand, within Echvi_0129 at 127.942 kb on + strand, within Echvi_0129 at 127.943 kb on - strand, within Echvi_0129 at 127.943 kb on - strand, within Echvi_0129 at 127.943 kb on - strand, within Echvi_0129 at 127.943 kb on - strand, within Echvi_0129 at 127.992 kb on - strand, within Echvi_0129 at 128.015 kb on - strand, within Echvi_0129 at 128.026 kb on + strand, within Echvi_0129 at 128.045 kb on - strand, within Echvi_0129 at 128.105 kb on - strand at 128.114 kb on + strand at 128.114 kb on + strand at 128.114 kb on + strand at 128.114 kb on + strand at 128.115 kb on - strand at 128.115 kb on - strand at 128.115 kb on - strand at 128.120 kb on - strand at 128.127 kb on - strand at 128.178 kb on + strand at 128.179 kb on - strand at 128.217 kb on - strand at 128.217 kb on - strand at 128.245 kb on + strand at 128.245 kb on + strand at 128.245 kb on + strand at 128.245 kb on + strand at 128.246 kb on - strand at 128.246 kb on - strand at 128.246 kb on - strand at 128.246 kb on - strand at 128.246 kb on - strand at 128.246 kb on - strand at 128.246 kb on - strand at 128.247 kb on + strand at 128.304 kb on + strand, within Echvi_0130 at 128.748 kb on - strand, within Echvi_0130 at 128.859 kb on + strand, within Echvi_0130 at 128.862 kb on + strand, within Echvi_0130 at 128.948 kb on - strand, within Echvi_0130 at 128.957 kb on + strand, within Echvi_0130 at 128.957 kb on + strand, within Echvi_0130 at 128.957 kb on + strand, within Echvi_0130 at 128.957 kb on + strand, within Echvi_0130 at 128.983 kb on + strand, within Echvi_0130 at 128.983 kb on + strand, within Echvi_0130 at 128.984 kb on - strand, within Echvi_0130 at 128.986 kb on + strand, within Echvi_0130 at 128.986 kb on + strand, within Echvi_0130 at 128.986 kb on + strand, within Echvi_0130 at 128.986 kb on + strand, within Echvi_0130 at 128.987 kb on - strand, within Echvi_0130 at 129.081 kb on - strand, within Echvi_0130 at 129.236 kb on - strand, within Echvi_0130 at 129.236 kb on - strand, within Echvi_0130 at 129.328 kb on + strand, within Echvi_0130 at 129.329 kb on - strand, within Echvi_0130 at 129.373 kb on - strand, within Echvi_0130 at 129.373 kb on - strand, within Echvi_0130 at 129.373 kb on - strand, within Echvi_0130 at 129.376 kb on + strand, within Echvi_0130 at 129.376 kb on + strand, within Echvi_0130 at 129.376 kb on + strand, within Echvi_0130 at 129.377 kb on - strand, within Echvi_0130 at 129.377 kb on - strand, within Echvi_0130 at 129.377 kb on - strand, within Echvi_0130 at 129.377 kb on - strand, within Echvi_0130 at 129.421 kb on + strand, within Echvi_0130 at 129.423 kb on + strand at 129.424 kb on - strand, within Echvi_0130 at 129.424 kb on - strand, within Echvi_0130 at 129.424 kb on - strand, within Echvi_0130 at 129.623 kb on - strand at 129.654 kb on + strand at 129.655 kb on - strand at 129.740 kb on + strand at 129.741 kb on - strand at 129.741 kb on - strand at 129.751 kb on + strand at 129.751 kb on + strand at 129.751 kb on + strand at 129.751 kb on + strand at 129.751 kb on + strand at 129.751 kb on + strand at 129.752 kb on - strand at 129.844 kb on + strand at 129.887 kb on + strand at 129.933 kb on + strand at 129.934 kb on - strand at 130.050 kb on + strand, within Echvi_0131 at 130.051 kb on - strand, within Echvi_0131 at 130.059 kb on + strand, within Echvi_0131 at 130.083 kb on - strand, within Echvi_0131 at 130.083 kb on - strand, within Echvi_0131 at 130.094 kb on - strand, within Echvi_0131 at 130.098 kb on - strand, within Echvi_0131 at 130.107 kb on + strand, within Echvi_0131 at 130.108 kb on - strand, within Echvi_0131 at 130.133 kb on - strand, within Echvi_0131 at 130.133 kb on - strand, within Echvi_0131 at 130.145 kb on + strand, within Echvi_0131 at 130.199 kb on - strand, within Echvi_0131 at 130.331 kb on - strand, within Echvi_0131 at 130.339 kb on - strand, within Echvi_0131 at 130.429 kb on + strand, within Echvi_0131 at 130.429 kb on + strand, within Echvi_0131 at 130.430 kb on - strand, within Echvi_0131 at 130.449 kb on + strand, within Echvi_0131 at 130.449 kb on + strand, within Echvi_0131 at 130.486 kb on - strand, within Echvi_0131 at 130.524 kb on - strand, within Echvi_0131 at 130.524 kb on - strand, within Echvi_0131 at 130.579 kb on - strand at 130.599 kb on - strand at 130.615 kb on + strand at 130.616 kb on - strand at 130.639 kb on - strand at 130.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 127,185 + +1.5 127,193 + -0.4 127,198 + -2.1 127,198 + +0.3 127,200 + +0.8 127,240 + Echvi_0127 0.16 -0.7 127,250 + Echvi_0127 0.20 -1.6 127,280 - Echvi_0127 0.33 +0.3 127,424 - +0.8 127,424 - +0.1 127,536 - Echvi_0128 0.25 -0.4 127,650 - +1.0 127,659 + -3.9 127,659 + +0.2 127,660 - +0.0 127,660 - +0.8 127,660 - +1.5 127,844 + Echvi_0129 0.45 -0.2 127,844 + Echvi_0129 0.45 +1.8 127,847 - Echvi_0129 0.45 +0.5 127,847 - Echvi_0129 0.45 +0.8 127,873 - Echvi_0129 0.51 +0.7 127,942 + Echvi_0129 0.65 -0.1 127,942 + Echvi_0129 0.65 +0.7 127,943 - Echvi_0129 0.65 +1.6 127,943 - Echvi_0129 0.65 +0.2 127,943 - Echvi_0129 0.65 +1.0 127,943 - Echvi_0129 0.65 +0.4 127,992 - Echvi_0129 0.75 -0.1 128,015 - Echvi_0129 0.80 +0.6 128,026 + Echvi_0129 0.82 -0.9 128,045 - Echvi_0129 0.86 +0.6 128,105 - -1.4 128,114 + -1.3 128,114 + -1.4 128,114 + -1.0 128,114 + +1.0 128,115 - -0.7 128,115 - -0.0 128,115 - -2.2 128,120 - -0.6 128,127 - -0.6 128,178 + -1.5 128,179 - -0.1 128,217 - +0.9 128,217 - +0.3 128,245 + +0.0 128,245 + +0.9 128,245 + +0.4 128,245 + -2.7 128,246 - -0.4 128,246 - +0.1 128,246 - -0.0 128,246 - -0.7 128,246 - -1.4 128,246 - +1.0 128,246 - -1.0 128,247 + -0.6 128,304 + Echvi_0130 0.10 -1.1 128,748 - Echvi_0130 0.37 +0.6 128,859 + Echvi_0130 0.44 -1.4 128,862 + Echvi_0130 0.44 +0.8 128,948 - Echvi_0130 0.49 +0.4 128,957 + Echvi_0130 0.50 -1.1 128,957 + Echvi_0130 0.50 -2.3 128,957 + Echvi_0130 0.50 -1.0 128,957 + Echvi_0130 0.50 -0.4 128,983 + Echvi_0130 0.52 -0.6 128,983 + Echvi_0130 0.52 +0.2 128,984 - Echvi_0130 0.52 -2.0 128,986 + Echvi_0130 0.52 -0.7 128,986 + Echvi_0130 0.52 +0.1 128,986 + Echvi_0130 0.52 -1.7 128,986 + Echvi_0130 0.52 -0.8 128,987 - Echvi_0130 0.52 -2.2 129,081 - Echvi_0130 0.58 -1.3 129,236 - Echvi_0130 0.67 +0.2 129,236 - Echvi_0130 0.67 -1.1 129,328 + Echvi_0130 0.73 -1.1 129,329 - Echvi_0130 0.73 -0.3 129,373 - Echvi_0130 0.75 -0.1 129,373 - Echvi_0130 0.75 +0.6 129,373 - Echvi_0130 0.75 -0.4 129,376 + Echvi_0130 0.76 -0.3 129,376 + Echvi_0130 0.76 -0.3 129,376 + Echvi_0130 0.76 -1.1 129,377 - Echvi_0130 0.76 -0.3 129,377 - Echvi_0130 0.76 -0.6 129,377 - Echvi_0130 0.76 +0.2 129,377 - Echvi_0130 0.76 -0.1 129,421 + Echvi_0130 0.78 -0.6 129,423 + -0.6 129,424 - Echvi_0130 0.78 -1.0 129,424 - Echvi_0130 0.78 -1.2 129,424 - Echvi_0130 0.78 +0.6 129,623 - +0.0 129,654 + -0.8 129,655 - -0.5 129,740 + -0.0 129,741 - -0.0 129,741 - +2.7 129,751 + +1.4 129,751 + -0.6 129,751 + +0.3 129,751 + -0.7 129,751 + +0.0 129,751 + -1.9 129,752 - +0.9 129,844 + -0.8 129,887 + -1.6 129,933 + -0.7 129,934 - +0.2 130,050 + Echvi_0131 0.21 -1.7 130,051 - Echvi_0131 0.21 +0.9 130,059 + Echvi_0131 0.22 +0.5 130,083 - Echvi_0131 0.26 +0.2 130,083 - Echvi_0131 0.26 +1.3 130,094 - Echvi_0131 0.27 +0.0 130,098 - Echvi_0131 0.28 -0.3 130,107 + Echvi_0131 0.29 +0.2 130,108 - Echvi_0131 0.29 -0.3 130,133 - Echvi_0131 0.33 -1.0 130,133 - Echvi_0131 0.33 -1.4 130,145 + Echvi_0131 0.34 +2.2 130,199 - Echvi_0131 0.42 -0.0 130,331 - Echvi_0131 0.61 +2.3 130,339 - Echvi_0131 0.62 -0.9 130,429 + Echvi_0131 0.74 -0.6 130,429 + Echvi_0131 0.74 +0.4 130,430 - Echvi_0131 0.74 +0.0 130,449 + Echvi_0131 0.77 -2.4 130,449 + Echvi_0131 0.77 -1.1 130,486 - Echvi_0131 0.82 -1.1 130,524 - Echvi_0131 0.88 -0.2 130,524 - Echvi_0131 0.88 +1.1 130,579 - +0.0 130,599 - -2.6 130,615 + -0.4 130,616 - -0.9 130,639 - -0.4 130,775 - -2.1
Or see this region's nucleotide sequence