Strain Fitness in Agrobacterium fabrum C58 around Atu6182

Experiment: Hydantoin (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6180 and Atu6181 are separated by 270 nucleotidesAtu6181 and Atu6182 are separated by 33 nucleotidesAtu6182 and Atu6183 are separated by 14 nucleotides Atu6180: Atu6180 - virA/G regulated protein, at 195,060 to 195,755 Atu6180 Atu6181: Atu6181 - virA/G regulated topoisomerase, at 196,026 to 196,469 Atu6181 Atu6182: Atu6182 - endonuclease, at 196,503 to 197,846 Atu6182 Atu6183: Atu6183 - virA/G regulated protein, at 197,861 to 199,882 Atu6183 Position (kb) 196 197 198Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 195.523 kb on - strand, within Atu6180at 195.525 kb on + strand, within Atu6180at 195.533 kb on - strand, within Atu6180at 195.535 kb on + strand, within Atu6180at 195.535 kb on + strand, within Atu6180at 195.535 kb on + strand, within Atu6180at 195.535 kb on + strand, within Atu6180at 195.536 kb on + strand, within Atu6180at 195.569 kb on - strand, within Atu6180at 195.589 kb on + strand, within Atu6180at 195.589 kb on - strand, within Atu6180at 195.589 kb on - strand, within Atu6180at 195.633 kb on + strand, within Atu6180at 195.700 kb on - strandat 195.993 kb on + strandat 196.036 kb on + strandat 196.037 kb on - strandat 196.044 kb on - strandat 196.048 kb on + strandat 196.071 kb on - strand, within Atu6181at 196.104 kb on - strand, within Atu6181at 196.178 kb on + strand, within Atu6181at 196.185 kb on + strand, within Atu6181at 196.192 kb on + strand, within Atu6181at 196.210 kb on + strand, within Atu6181at 196.266 kb on - strand, within Atu6181at 196.289 kb on - strand, within Atu6181at 196.289 kb on - strand, within Atu6181at 196.289 kb on - strand, within Atu6181at 196.312 kb on - strand, within Atu6181at 196.386 kb on + strand, within Atu6181at 196.396 kb on - strand, within Atu6181at 196.459 kb on - strandat 196.459 kb on - strandat 196.459 kb on - strandat 196.480 kb on + strandat 196.566 kb on - strandat 196.606 kb on + strandat 196.606 kb on + strandat 196.606 kb on + strandat 196.614 kb on - strandat 196.614 kb on - strandat 196.692 kb on - strand, within Atu6182at 196.694 kb on - strand, within Atu6182at 196.740 kb on - strand, within Atu6182at 196.747 kb on - strand, within Atu6182at 196.777 kb on + strand, within Atu6182at 196.785 kb on - strand, within Atu6182at 196.785 kb on - strand, within Atu6182at 196.814 kb on - strand, within Atu6182at 196.829 kb on - strand, within Atu6182at 196.845 kb on + strand, within Atu6182at 196.853 kb on - strand, within Atu6182at 196.880 kb on - strand, within Atu6182at 196.899 kb on + strand, within Atu6182at 196.899 kb on + strand, within Atu6182at 196.902 kb on - strand, within Atu6182at 196.976 kb on - strand, within Atu6182at 197.032 kb on + strand, within Atu6182at 197.034 kb on - strand, within Atu6182at 197.040 kb on - strand, within Atu6182at 197.055 kb on - strand, within Atu6182at 197.075 kb on + strand, within Atu6182at 197.075 kb on + strand, within Atu6182at 197.083 kb on + strand, within Atu6182at 197.083 kb on - strand, within Atu6182at 197.091 kb on - strand, within Atu6182at 197.121 kb on + strand, within Atu6182at 197.121 kb on + strand, within Atu6182at 197.154 kb on - strand, within Atu6182at 197.156 kb on + strand, within Atu6182at 197.193 kb on + strand, within Atu6182at 197.230 kb on + strand, within Atu6182at 197.291 kb on + strand, within Atu6182at 197.353 kb on + strand, within Atu6182at 197.418 kb on + strand, within Atu6182at 197.425 kb on + strand, within Atu6182at 197.426 kb on - strand, within Atu6182at 197.430 kb on + strand, within Atu6182at 197.445 kb on - strand, within Atu6182at 197.541 kb on + strand, within Atu6182at 197.549 kb on - strand, within Atu6182at 197.551 kb on + strand, within Atu6182at 197.574 kb on - strand, within Atu6182at 197.607 kb on + strand, within Atu6182at 197.618 kb on - strand, within Atu6182at 197.637 kb on - strand, within Atu6182at 197.658 kb on - strand, within Atu6182at 197.684 kb on + strand, within Atu6182at 197.687 kb on - strand, within Atu6182at 197.692 kb on - strand, within Atu6182at 197.692 kb on - strand, within Atu6182at 197.692 kb on - strand, within Atu6182at 197.854 kb on - strandat 197.926 kb on + strandat 197.926 kb on + strandat 197.932 kb on - strandat 197.934 kb on - strandat 197.934 kb on - strandat 197.934 kb on - strandat 197.939 kb on - strandat 198.005 kb on + strandat 198.179 kb on + strand, within Atu6183at 198.179 kb on + strand, within Atu6183at 198.187 kb on + strand, within Atu6183at 198.187 kb on + strand, within Atu6183at 198.187 kb on - strand, within Atu6183at 198.266 kb on + strand, within Atu6183at 198.293 kb on - strand, within Atu6183at 198.437 kb on + strand, within Atu6183at 198.438 kb on - strand, within Atu6183at 198.438 kb on - strand, within Atu6183at 198.445 kb on - strand, within Atu6183at 198.450 kb on - strand, within Atu6183at 198.458 kb on + strand, within Atu6183at 198.458 kb on + strand, within Atu6183at 198.466 kb on - strand, within Atu6183at 198.466 kb on - strand, within Atu6183at 198.466 kb on - strand, within Atu6183at 198.478 kb on - strand, within Atu6183at 198.514 kb on + strand, within Atu6183at 198.519 kb on + strand, within Atu6183at 198.519 kb on + strand, within Atu6183at 198.525 kb on - strand, within Atu6183at 198.527 kb on - strand, within Atu6183at 198.527 kb on - strand, within Atu6183at 198.609 kb on + strand, within Atu6183at 198.659 kb on + strand, within Atu6183at 198.666 kb on + strand, within Atu6183at 198.667 kb on - strand, within Atu6183at 198.727 kb on + strand, within Atu6183at 198.727 kb on + strand, within Atu6183at 198.761 kb on - strand, within Atu6183at 198.767 kb on + strand, within Atu6183at 198.767 kb on + strand, within Atu6183at 198.775 kb on - strand, within Atu6183at 198.780 kb on - strand, within Atu6183at 198.799 kb on + strand, within Atu6183at 198.799 kb on + strand, within Atu6183at 198.807 kb on - strand, within Atu6183at 198.816 kb on + strand, within Atu6183at 198.817 kb on - strand, within Atu6183at 198.838 kb on - strand, within Atu6183

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydantoin (N)
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195,523 - Atu6180 0.67 +1.5
195,525 + Atu6180 0.67 +1.8
195,533 - Atu6180 0.68 +1.8
195,535 + Atu6180 0.68 -0.4
195,535 + Atu6180 0.68 +0.2
195,535 + Atu6180 0.68 +0.2
195,535 + Atu6180 0.68 +0.6
195,536 + Atu6180 0.68 +2.2
195,569 - Atu6180 0.73 +0.9
195,589 + Atu6180 0.76 +0.8
195,589 - Atu6180 0.76 -0.3
195,589 - Atu6180 0.76 +0.8
195,633 + Atu6180 0.82 +0.1
195,700 - +0.1
195,993 + -0.6
196,036 + +0.3
196,037 - +1.3
196,044 - +2.3
196,048 + +1.8
196,071 - Atu6181 0.10 +1.3
196,104 - Atu6181 0.18 -1.1
196,178 + Atu6181 0.34 +0.8
196,185 + Atu6181 0.36 +0.4
196,192 + Atu6181 0.37 +0.9
196,210 + Atu6181 0.41 +1.4
196,266 - Atu6181 0.54 +0.4
196,289 - Atu6181 0.59 +1.5
196,289 - Atu6181 0.59 +1.4
196,289 - Atu6181 0.59 +2.1
196,312 - Atu6181 0.64 +0.0
196,386 + Atu6181 0.81 +1.1
196,396 - Atu6181 0.83 +1.6
196,459 - -0.3
196,459 - +0.4
196,459 - +1.6
196,480 + +0.5
196,566 - +0.7
196,606 + +0.3
196,606 + +2.2
196,606 + +2.6
196,614 - +1.8
196,614 - +1.4
196,692 - Atu6182 0.14 +0.4
196,694 - Atu6182 0.14 +1.7
196,740 - Atu6182 0.18 +1.0
196,747 - Atu6182 0.18 +1.4
196,777 + Atu6182 0.20 +1.0
196,785 - Atu6182 0.21 +1.7
196,785 - Atu6182 0.21 -0.2
196,814 - Atu6182 0.23 +0.3
196,829 - Atu6182 0.24 +1.8
196,845 + Atu6182 0.25 +1.0
196,853 - Atu6182 0.26 +0.3
196,880 - Atu6182 0.28 +0.3
196,899 + Atu6182 0.29 +0.7
196,899 + Atu6182 0.29 +1.0
196,902 - Atu6182 0.30 +1.0
196,976 - Atu6182 0.35 +0.7
197,032 + Atu6182 0.39 +0.8
197,034 - Atu6182 0.40 +0.6
197,040 - Atu6182 0.40 +0.5
197,055 - Atu6182 0.41 +1.3
197,075 + Atu6182 0.43 +0.1
197,075 + Atu6182 0.43 +1.3
197,083 + Atu6182 0.43 +0.4
197,083 - Atu6182 0.43 +0.5
197,091 - Atu6182 0.44 +0.6
197,121 + Atu6182 0.46 +0.4
197,121 + Atu6182 0.46 -0.0
197,154 - Atu6182 0.48 +2.1
197,156 + Atu6182 0.49 +2.4
197,193 + Atu6182 0.51 +0.0
197,230 + Atu6182 0.54 +0.6
197,291 + Atu6182 0.59 -1.0
197,353 + Atu6182 0.63 +1.5
197,418 + Atu6182 0.68 +0.8
197,425 + Atu6182 0.69 +2.1
197,426 - Atu6182 0.69 -0.2
197,430 + Atu6182 0.69 +0.1
197,445 - Atu6182 0.70 +1.1
197,541 + Atu6182 0.77 +3.1
197,549 - Atu6182 0.78 -0.7
197,551 + Atu6182 0.78 -0.0
197,574 - Atu6182 0.80 +2.3
197,607 + Atu6182 0.82 +0.1
197,618 - Atu6182 0.83 +1.9
197,637 - Atu6182 0.84 +2.1
197,658 - Atu6182 0.86 +0.7
197,684 + Atu6182 0.88 +1.2
197,687 - Atu6182 0.88 +0.7
197,692 - Atu6182 0.88 +0.5
197,692 - Atu6182 0.88 +1.3
197,692 - Atu6182 0.88 -0.0
197,854 - +0.5
197,926 + +2.4
197,926 + -0.4
197,932 - -0.2
197,934 - +2.1
197,934 - +0.9
197,934 - +0.6
197,939 - -0.0
198,005 + +1.4
198,179 + Atu6183 0.16 +0.5
198,179 + Atu6183 0.16 +1.8
198,187 + Atu6183 0.16 -1.5
198,187 + Atu6183 0.16 +1.3
198,187 - Atu6183 0.16 +2.6
198,266 + Atu6183 0.20 +1.5
198,293 - Atu6183 0.21 +4.1
198,437 + Atu6183 0.28 +0.3
198,438 - Atu6183 0.29 -1.8
198,438 - Atu6183 0.29 +0.8
198,445 - Atu6183 0.29 +1.8
198,450 - Atu6183 0.29 +0.4
198,458 + Atu6183 0.30 +0.5
198,458 + Atu6183 0.30 -0.2
198,466 - Atu6183 0.30 -0.4
198,466 - Atu6183 0.30 +0.4
198,466 - Atu6183 0.30 -0.4
198,478 - Atu6183 0.31 -0.1
198,514 + Atu6183 0.32 +0.1
198,519 + Atu6183 0.33 +0.8
198,519 + Atu6183 0.33 +1.4
198,525 - Atu6183 0.33 +0.5
198,527 - Atu6183 0.33 +1.8
198,527 - Atu6183 0.33 +0.8
198,609 + Atu6183 0.37 -0.0
198,659 + Atu6183 0.39 +0.5
198,666 + Atu6183 0.40 +1.8
198,667 - Atu6183 0.40 +1.5
198,727 + Atu6183 0.43 +1.5
198,727 + Atu6183 0.43 +1.8
198,761 - Atu6183 0.45 +0.2
198,767 + Atu6183 0.45 -0.5
198,767 + Atu6183 0.45 +1.1
198,775 - Atu6183 0.45 +0.3
198,780 - Atu6183 0.45 +0.1
198,799 + Atu6183 0.46 +0.3
198,799 + Atu6183 0.46 -0.1
198,807 - Atu6183 0.47 +1.3
198,816 + Atu6183 0.47 +0.6
198,817 - Atu6183 0.47 +2.2
198,838 - Atu6183 0.48 +0.3

Or see this region's nucleotide sequence