Experiment: Hydantoin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5042 and Atu5043 are separated by 100 nucleotides Atu5043 and Atu5044 are separated by 48 nucleotides
Atu5042: Atu5042 - recombinase, at 42,278 to 43,795
Atu5042
Atu5043: Atu5043 - hypothetical protein, at 43,896 to 44,303
Atu5043
Atu5044: Atu5044 - hypothetical protein, at 44,352 to 45,479
Atu5044
Position (kb) 43
44
45 Strain fitness (log2 ratio) -1
0
1
2
3 at 42.920 kb on - strand, within Atu5042 at 42.937 kb on - strand, within Atu5042 at 43.016 kb on - strand, within Atu5042 at 43.019 kb on + strand, within Atu5042 at 43.019 kb on + strand, within Atu5042 at 43.025 kb on - strand, within Atu5042 at 43.069 kb on - strand, within Atu5042 at 43.233 kb on + strand, within Atu5042 at 43.309 kb on + strand, within Atu5042 at 43.317 kb on - strand, within Atu5042 at 43.317 kb on - strand, within Atu5042 at 43.329 kb on + strand, within Atu5042 at 43.366 kb on - strand, within Atu5042 at 43.473 kb on + strand, within Atu5042 at 43.473 kb on + strand, within Atu5042 at 43.494 kb on - strand, within Atu5042 at 43.508 kb on + strand, within Atu5042 at 43.508 kb on + strand, within Atu5042 at 43.508 kb on - strand, within Atu5042 at 43.602 kb on + strand, within Atu5042 at 43.709 kb on + strand at 43.856 kb on - strand at 43.975 kb on - strand, within Atu5043 at 44.030 kb on + strand, within Atu5043 at 44.068 kb on + strand, within Atu5043 at 44.122 kb on - strand, within Atu5043 at 44.160 kb on + strand, within Atu5043 at 44.186 kb on - strand, within Atu5043 at 44.266 kb on + strand at 44.274 kb on - strand at 44.322 kb on - strand at 44.330 kb on - strand at 44.368 kb on + strand at 44.387 kb on - strand at 44.435 kb on - strand at 44.435 kb on - strand at 44.445 kb on - strand at 44.588 kb on + strand, within Atu5044 at 44.611 kb on + strand, within Atu5044 at 44.623 kb on - strand, within Atu5044 at 44.624 kb on - strand, within Atu5044 at 44.656 kb on + strand, within Atu5044 at 44.702 kb on + strand, within Atu5044 at 44.711 kb on - strand, within Atu5044 at 44.722 kb on + strand, within Atu5044 at 44.722 kb on + strand, within Atu5044 at 44.730 kb on - strand, within Atu5044 at 44.754 kb on + strand, within Atu5044 at 44.811 kb on - strand, within Atu5044 at 44.815 kb on + strand, within Atu5044 at 44.820 kb on + strand, within Atu5044 at 44.842 kb on - strand, within Atu5044 at 44.872 kb on - strand, within Atu5044 at 44.925 kb on - strand, within Atu5044 at 44.943 kb on - strand, within Atu5044 at 44.976 kb on + strand, within Atu5044 at 45.031 kb on - strand, within Atu5044 at 45.069 kb on + strand, within Atu5044 at 45.072 kb on - strand, within Atu5044 at 45.097 kb on + strand, within Atu5044 at 45.097 kb on + strand, within Atu5044 at 45.105 kb on - strand, within Atu5044 at 45.105 kb on - strand, within Atu5044 at 45.105 kb on - strand, within Atu5044 at 45.114 kb on + strand, within Atu5044 at 45.131 kb on - strand, within Atu5044 at 45.138 kb on - strand, within Atu5044 at 45.142 kb on + strand, within Atu5044 at 45.220 kb on + strand, within Atu5044 at 45.220 kb on + strand, within Atu5044 at 45.228 kb on - strand, within Atu5044 at 45.228 kb on - strand, within Atu5044 at 45.228 kb on - strand, within Atu5044 at 45.256 kb on + strand, within Atu5044 at 45.274 kb on - strand, within Atu5044 at 45.279 kb on + strand, within Atu5044 at 45.284 kb on + strand, within Atu5044 at 45.292 kb on - strand, within Atu5044 at 45.303 kb on + strand, within Atu5044 at 45.303 kb on - strand, within Atu5044
Per-strain Table
Position Strand Gene LocusTag Fraction Hydantoin (N) remove 42,920 - Atu5042 0.42 -0.4 42,937 - Atu5042 0.43 +1.9 43,016 - Atu5042 0.49 +1.9 43,019 + Atu5042 0.49 +0.8 43,019 + Atu5042 0.49 +0.4 43,025 - Atu5042 0.49 +0.5 43,069 - Atu5042 0.52 -0.2 43,233 + Atu5042 0.63 +0.5 43,309 + Atu5042 0.68 -1.2 43,317 - Atu5042 0.68 -0.7 43,317 - Atu5042 0.68 +1.1 43,329 + Atu5042 0.69 +0.3 43,366 - Atu5042 0.72 +1.3 43,473 + Atu5042 0.79 +1.5 43,473 + Atu5042 0.79 +0.1 43,494 - Atu5042 0.80 +1.7 43,508 + Atu5042 0.81 +1.0 43,508 + Atu5042 0.81 -0.0 43,508 - Atu5042 0.81 +1.3 43,602 + Atu5042 0.87 +0.4 43,709 + +0.2 43,856 - +1.2 43,975 - Atu5043 0.19 +0.4 44,030 + Atu5043 0.33 -0.3 44,068 + Atu5043 0.42 -0.7 44,122 - Atu5043 0.55 +0.6 44,160 + Atu5043 0.65 +0.6 44,186 - Atu5043 0.71 +1.7 44,266 + +0.2 44,274 - +0.4 44,322 - +1.4 44,330 - +0.0 44,368 + +1.2 44,387 - +1.9 44,435 - +1.9 44,435 - +0.8 44,445 - -0.4 44,588 + Atu5044 0.21 +0.4 44,611 + Atu5044 0.23 +0.5 44,623 - Atu5044 0.24 +1.1 44,624 - Atu5044 0.24 +0.6 44,656 + Atu5044 0.27 +1.6 44,702 + Atu5044 0.31 -1.1 44,711 - Atu5044 0.32 +2.9 44,722 + Atu5044 0.33 -0.8 44,722 + Atu5044 0.33 +0.4 44,730 - Atu5044 0.34 +1.1 44,754 + Atu5044 0.36 -0.6 44,811 - Atu5044 0.41 +0.2 44,815 + Atu5044 0.41 -0.1 44,820 + Atu5044 0.41 -1.1 44,842 - Atu5044 0.43 -0.0 44,872 - Atu5044 0.46 +2.7 44,925 - Atu5044 0.51 +1.1 44,943 - Atu5044 0.52 -1.0 44,976 + Atu5044 0.55 +0.9 45,031 - Atu5044 0.60 +0.6 45,069 + Atu5044 0.64 +0.9 45,072 - Atu5044 0.64 +1.8 45,097 + Atu5044 0.66 -0.3 45,097 + Atu5044 0.66 +1.3 45,105 - Atu5044 0.67 -0.1 45,105 - Atu5044 0.67 +0.4 45,105 - Atu5044 0.67 +1.0 45,114 + Atu5044 0.68 +1.5 45,131 - Atu5044 0.69 +1.3 45,138 - Atu5044 0.70 -0.2 45,142 + Atu5044 0.70 +0.6 45,220 + Atu5044 0.77 -1.2 45,220 + Atu5044 0.77 +0.2 45,228 - Atu5044 0.78 +0.9 45,228 - Atu5044 0.78 +1.7 45,228 - Atu5044 0.78 +1.3 45,256 + Atu5044 0.80 -0.2 45,274 - Atu5044 0.82 +0.2 45,279 + Atu5044 0.82 +0.3 45,284 + Atu5044 0.83 +1.7 45,292 - Atu5044 0.83 -0.6 45,303 + Atu5044 0.84 +1.6 45,303 - Atu5044 0.84 -0.5
Or see this region's nucleotide sequence